src/jalview/jbgui/GPCAPanel.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.util.MessageManager;
  24
  25 import java.awt.*;
  26 import java.awt.event.*;
  27
  28 import javax.swing.*;
  29 import javax.swing.event.*;
  30
  31 public class GPCAPanel extends JInternalFrame
  32 {
  33   JPanel jPanel2 = new JPanel();
  34
  35   JLabel jLabel1 = new JLabel();
  36
  37   JLabel jLabel2 = new JLabel();
  38
  39   JLabel jLabel3 = new JLabel();
  40
  41   protected JComboBox xCombobox = new JComboBox();
  42
  43   protected JComboBox yCombobox = new JComboBox();
  44
  45   protected JComboBox zCombobox = new JComboBox();
  46
  47   protected JButton resetButton = new JButton();
  48
  49   FlowLayout flowLayout1 = new FlowLayout();
  50
  51   BorderLayout borderLayout1 = new BorderLayout();
  52
  53   JMenuBar jMenuBar1 = new JMenuBar();
  54
  55   JMenu fileMenu = new JMenu();
  56
  57   JMenu saveMenu = new JMenu();
  58
  59   protected JMenu scoreMatrixMenu = new JMenu();
  60
  61   JMenuItem eps = new JMenuItem();
  62
  63   JMenuItem png = new JMenuItem();
  64
  65   JMenuItem print = new JMenuItem();
  66
  67   JMenuItem outputValues = new JMenuItem();
  68
  69   JMenuItem outputPoints = new JMenuItem();
  70
  71   JMenuItem outputProjPoints = new JMenuItem();
  72
  73   protected JMenu viewMenu = new JMenu();
  74
  75   protected JCheckBoxMenuItem showLabels = new JCheckBoxMenuItem();
  76
  77   JMenuItem bgcolour = new JMenuItem();
  78
  79   JMenuItem originalSeqData = new JMenuItem();
  80
  81   protected JMenu associateViewsMenu = new JMenu();
  82
  83   protected JMenu calcSettings = new JMenu();
  84
  85   protected JCheckBoxMenuItem nuclSetting = new JCheckBoxMenuItem();
  86
  87   protected JCheckBoxMenuItem protSetting = new JCheckBoxMenuItem();
  88
  89   protected JCheckBoxMenuItem jvVersionSetting = new JCheckBoxMenuItem();
  90
  91   protected JLabel statusBar = new JLabel();
  92
  93   protected GridLayout statusPanelLayout = new GridLayout();
  94
  95   protected JPanel statusPanel = new JPanel();
  96
  97   public GPCAPanel()
  98   {
  99     try
 100     {
 101       jbInit();
 102     } catch (Exception e)
 103     {
 104       e.printStackTrace();
 105     }
 106
 107     for (int i = 1; i < 8; i++)
 108     {
 109       xCombobox.addItem("dim " + i);
 110       yCombobox.addItem("dim " + i);
 111       zCombobox.addItem("dim " + i);
 112     }
 113
 114     setJMenuBar(jMenuBar1);
 115   }
 116
 117   private void jbInit() throws Exception
 118   {
 119     this.getContentPane().setLayout(borderLayout1);
 120     jPanel2.setLayout(flowLayout1);
 121     jLabel1.setFont(new java.awt.Font("Verdana", 0, 12));
 122     jLabel1.setText("x=");
 123     jLabel2.setFont(new java.awt.Font("Verdana", 0, 12));
 124     jLabel2.setText("y=");
 125     jLabel3.setFont(new java.awt.Font("Verdana", 0, 12));
 126     jLabel3.setText("z=");
 127     jPanel2.setBackground(Color.white);
 128     jPanel2.setBorder(null);
 129     zCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 130     zCombobox.addActionListener(new java.awt.event.ActionListener()
 131     {
 132       public void actionPerformed(ActionEvent e)
 133       {
 134         zCombobox_actionPerformed(e);
 135       }
 136     });
 137     yCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 138     yCombobox.addActionListener(new java.awt.event.ActionListener()
 139     {
 140       public void actionPerformed(ActionEvent e)
 141       {
 142         yCombobox_actionPerformed(e);
 143       }
 144     });
 145     xCombobox.setFont(new java.awt.Font("Verdana", 0, 12));
 146     xCombobox.addActionListener(new java.awt.event.ActionListener()
 147     {
 148       public void actionPerformed(ActionEvent e)
 149       {
 150         xCombobox_actionPerformed(e);
 151       }
 152     });
 153     resetButton.setFont(new java.awt.Font("Verdana", 0, 12));
 154     resetButton.setText(MessageManager.getString("action.reset"));
 155     resetButton.addActionListener(new java.awt.event.ActionListener()
 156     {
 157       @Override
 158       public void actionPerformed(ActionEvent e)
 159       {
 160         resetButton_actionPerformed(e);
 161       }
 162     });
 163     fileMenu.setText(MessageManager.getString("action.file"));
 164     saveMenu.setText(MessageManager.getString("action.save_as"));
 165     eps.setText("EPS");
 166     eps.addActionListener(new ActionListener()
 167     {
 168       public void actionPerformed(ActionEvent e)
 169       {
 170         eps_actionPerformed(e);
 171       }
 172     });
 173     png.setText("PNG");
 174     png.addActionListener(new ActionListener()
 175     {
 176       public void actionPerformed(ActionEvent e)
 177       {
 178         png_actionPerformed(e);
 179       }
 180     });
 181     outputValues.setText(MessageManager.getString("label.output_values"));
 182     outputValues.addActionListener(new ActionListener()
 183     {
 184       public void actionPerformed(ActionEvent e)
 185       {
 186         outputValues_actionPerformed(e);
 187       }
 188     });
 189     outputPoints.setText(MessageManager.getString("label.output_points"));
 190     outputPoints.addActionListener(new ActionListener()
 191     {
 192       public void actionPerformed(ActionEvent e)
 193       {
 194         outputPoints_actionPerformed(e);
 195       }
 196     });
 197     outputProjPoints.setText(MessageManager
 198             .getString("label.output_transformed_points") + "...");
 199     outputProjPoints.addActionListener(new ActionListener()
 200     {
 201       public void actionPerformed(ActionEvent e)
 202       {
 203         outputProjPoints_actionPerformed(e);
 204       }
 205     });
 206     print.addActionListener(new ActionListener()
 207     {
 208       public void actionPerformed(ActionEvent e)
 209       {
 210         print_actionPerformed(e);
 211       }
 212     });
 213     viewMenu.setText(MessageManager.getString("action.view"));
 214     viewMenu.addMenuListener(new MenuListener()
 215     {
 216       public void menuSelected(MenuEvent e)
 217       {
 218         viewMenu_menuSelected();
 219       }
 220
 221       public void menuDeselected(MenuEvent e)
 222       {
 223       }
 224
 225       public void menuCanceled(MenuEvent e)
 226       {
 227       }
 228     });
 229     scoreMatrixMenu.setText(MessageManager
 230             .getString("label.select_score_model"));
 231     scoreMatrixMenu.addMenuListener(new MenuListener()
 232     {
 233       public void menuSelected(MenuEvent e)
 234       {
 235         scoreMatrix_menuSelected();
 236       }
 237
 238       public void menuDeselected(MenuEvent e)
 239       {
 240       }
 241
 242       public void menuCanceled(MenuEvent e)
 243       {
 244       }
 245     });
 246     showLabels.setText(MessageManager.getString("label.show_labels"));
 247     showLabels.addActionListener(new ActionListener()
 248     {
 249       public void actionPerformed(ActionEvent e)
 250       {
 251         showLabels_actionPerformed(e);
 252       }
 253     });
 254     print.setText(MessageManager.getString("action.print"));
 255     bgcolour.setText(MessageManager.getString("label.background_colour")
 256             + "...");
 257     bgcolour.addActionListener(new ActionListener()
 258     {
 259       public void actionPerformed(ActionEvent e)
 260       {
 261         bgcolour_actionPerformed(e);
 262       }
 263     });
 264     originalSeqData.setText(MessageManager.getString("label.input_data"));
 265     originalSeqData.addActionListener(new ActionListener()
 266     {
 267       public void actionPerformed(ActionEvent e)
 268       {
 269         originalSeqData_actionPerformed(e);
 270       }
 271     });
 272     associateViewsMenu.setText(MessageManager
 273             .getString("label.associate_nodes_with"));
 274     calcSettings.setText(MessageManager.getString("action.change_params"));
 275     nuclSetting
 276             .setText(MessageManager.getString("label.nucleotide_matrix"));
 277     protSetting.setText(MessageManager.getString("label.protein_matrix"));
 278     nuclSetting.addActionListener(new ActionListener()
 279     {
 280
 281       @Override
 282       public void actionPerformed(ActionEvent arg0)
 283       {
 284         nuclSetting_actionPerfomed(arg0);
 285       }
 286     });
 287     protSetting.addActionListener(new ActionListener()
 288     {
 289
 290       @Override
 291       public void actionPerformed(ActionEvent arg0)
 292       {
 293         protSetting_actionPerfomed(arg0);
 294       }
 295     });
 296     jvVersionSetting.setText(MessageManager
 297             .getString("label.jalview_pca_calculation"));
 298     jvVersionSetting.addActionListener(new ActionListener()
 299     {
 300       @Override
 301       public void actionPerformed(ActionEvent arg0)
 302       {
 303         jvVersionSetting_actionPerfomed(arg0);
 304       }
 305     });
 306     calcSettings.add(jvVersionSetting);
 307     calcSettings.add(nuclSetting);
 308     calcSettings.add(protSetting);
 309     calcSettings.add(scoreMatrixMenu);
 310     statusPanel.setLayout(statusPanelLayout);
 311     statusBar.setFont(new java.awt.Font("Verdana", 0, 12));
 312     // statusPanel.setBackground(Color.lightGray);
 313     // statusBar.setBackground(Color.lightGray);
 314     // statusPanel.add(statusBar, null);
 315     JPanel panelBar = new JPanel(new BorderLayout());
 316     panelBar.add(jPanel2, BorderLayout.NORTH);
 317     panelBar.add(statusPanel, BorderLayout.SOUTH);
 318     this.getContentPane().add(panelBar, BorderLayout.SOUTH);
 319     jPanel2.add(jLabel1, null);
 320     jPanel2.add(xCombobox, null);
 321     jPanel2.add(jLabel2, null);
 322     jPanel2.add(yCombobox, null);
 323     jPanel2.add(jLabel3, null);
 324     jPanel2.add(zCombobox, null);
 325     jPanel2.add(resetButton, null);
 326     jMenuBar1.add(fileMenu);
 327     jMenuBar1.add(viewMenu);
 328     jMenuBar1.add(calcSettings);
 329     fileMenu.add(saveMenu);
 330     fileMenu.add(outputValues);
 331     fileMenu.add(print);
 332     fileMenu.add(originalSeqData);
 333     fileMenu.add(outputPoints);
 334     fileMenu.add(outputProjPoints);
 335     saveMenu.add(eps);
 336     saveMenu.add(png);
 337     viewMenu.add(showLabels);
 338     viewMenu.add(bgcolour);
 339     viewMenu.add(associateViewsMenu);
 340   }
 341
 342   protected void scoreMatrix_menuSelected()
 343   {
 344     // TODO Auto-generated method stub
 345
 346   }
 347
 348   protected void resetButton_actionPerformed(ActionEvent e)
 349   {
 350     // TODO Auto-generated method stub
 351
 352   }
 353
 354   protected void protSetting_actionPerfomed(ActionEvent arg0)
 355   {
 356     // TODO Auto-generated method stub
 357
 358   }
 359
 360   protected void nuclSetting_actionPerfomed(ActionEvent arg0)
 361   {
 362     // TODO Auto-generated method stub
 363
 364   }
 365
 366   protected void outputPoints_actionPerformed(ActionEvent e)
 367   {
 368     // TODO Auto-generated method stub
 369
 370   }
 371
 372   protected void outputProjPoints_actionPerformed(ActionEvent e)
 373   {
 374     // TODO Auto-generated method stub
 375
 376   }
 377
 378   protected void xCombobox_actionPerformed(ActionEvent e)
 379   {
 380   }
 381
 382   protected void yCombobox_actionPerformed(ActionEvent e)
 383   {
 384   }
 385
 386   protected void zCombobox_actionPerformed(ActionEvent e)
 387   {
 388   }
 389
 390   public void eps_actionPerformed(ActionEvent e)
 391   {
 392
 393   }
 394
 395   public void png_actionPerformed(ActionEvent e)
 396   {
 397
 398   }
 399
 400   public void outputValues_actionPerformed(ActionEvent e)
 401   {
 402
 403   }
 404
 405   public void print_actionPerformed(ActionEvent e)
 406   {
 407
 408   }
 409
 410   public void showLabels_actionPerformed(ActionEvent e)
 411   {
 412
 413   }
 414
 415   public void bgcolour_actionPerformed(ActionEvent e)
 416   {
 417
 418   }
 419
 420   public void originalSeqData_actionPerformed(ActionEvent e)
 421   {
 422
 423   }
 424
 425   public void viewMenu_menuSelected()
 426   {
 427
 428   }
 429
 430   protected void jvVersionSetting_actionPerfomed(ActionEvent arg0)
 431   {
 432     // TODO Auto-generated method stub
 433
 434   }
 435 }