src/jalview/jbgui/GPreferences.java

   1 /*\r
   2 * Jalview - A Sequence Alignment Editor and Viewer\r
   3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
   4 *\r
   5 * This program is free software; you can redistribute it and/or\r
   6 * modify it under the terms of the GNU General Public License\r
   7 * as published by the Free Software Foundation; either version 2\r
   8 * of the License, or (at your option) any later version.\r
   9 *\r
  10 * This program is distributed in the hope that it will be useful,\r
  11 * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
  12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
  13 * GNU General Public License for more details.\r
  14 *\r
  15 * You should have received a copy of the GNU General Public License\r
  16 * along with this program; if not, write to the Free Software\r
  17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
  18 */\r
  19 package jalview.jbgui;\r
  20 \r
  21 import java.awt.*;\r
  22 \r
  23 import javax.swing.*;\r
  24 import javax.swing.border.TitledBorder;\r
  25 import java.awt.event.*;\r
  26 import javax.swing.event.*;\r
  27 \r
  28 \r
  29 /**\r
  30  * DOCUMENT ME!\r
  31  *\r
  32  * @author $author$\r
  33  * @version $Revision$\r
  34  */\r
  35 public class GPreferences extends JPanel\r
  36 {\r
  37     JTabbedPane tabbedPane = new JTabbedPane();\r
  38 \r
  39     JButton ok = new JButton();\r
  40     JButton cancel = new JButton();\r
  41     JPanel okCancelPanel = new JPanel();\r
  42     BorderLayout borderLayout1 = new BorderLayout();\r
  43     protected JCheckBox quality = new JCheckBox();\r
  44     JPanel visualTab = new JPanel();\r
  45     protected JCheckBox fullID = new JCheckBox();\r
  46     protected JCheckBox fullScreen = new JCheckBox();\r
  47     protected JCheckBox conservation = new JCheckBox();\r
  48     protected JCheckBox identity = new JCheckBox();\r
  49     protected JCheckBox annotations = new JCheckBox();\r
  50     JLabel gapLabel = new JLabel();\r
  51     protected JComboBox colour = new JComboBox();\r
  52     JLabel colourLabel = new JLabel();\r
  53     JLabel fontLabel = new JLabel();\r
  54     protected JComboBox fontSizeCB = new JComboBox();\r
  55     protected JComboBox fontStyleCB = new JComboBox();\r
  56     protected JComboBox fontNameCB = new JComboBox();\r
  57     protected JComboBox gapSymbolCB = new JComboBox();\r
  58     protected JCheckBox startupCheckbox = new JCheckBox();\r
  59     protected JTextField startupFileTextfield = new JTextField();\r
  60   JPanel connectTab = new JPanel();\r
  61   JLabel serverLabel = new JLabel();\r
  62   protected JList linkURLList = new JList();\r
  63   protected JTextField proxyServerTB = new JTextField();\r
  64   protected JTextField proxyPortTB = new JTextField();\r
  65   JLabel portLabel = new JLabel();\r
  66   JLabel browserLabel = new JLabel();\r
  67   protected JTextField defaultBrowser = new JTextField();\r
  68   JButton newLink = new JButton();\r
  69   JButton editLink = new JButton();\r
  70   JButton deleteLink = new JButton();\r
  71   JScrollPane linkScrollPane = new JScrollPane();\r
  72   JPanel linkPanel = new JPanel();\r
  73   BorderLayout borderLayout2 = new BorderLayout();\r
  74   JPanel editLinkButtons = new JPanel();\r
  75   GridLayout gridLayout1 = new GridLayout();\r
  76   protected JList linkNameList = new JList();\r
  77   JPanel linkPanel2 = new JPanel();\r
  78   BorderLayout borderLayout3 = new BorderLayout();\r
  79   protected JCheckBox useProxy = new JCheckBox();\r
  80   JPanel jPanel1 = new JPanel();\r
  81   TitledBorder titledBorder1 = new TitledBorder("Proxy Server");\r
  82   TitledBorder titledBorder2 = new TitledBorder("File Output");\r
  83   GridBagLayout gridBagLayout2 = new GridBagLayout();\r
  84   GridBagLayout gridBagLayout1 = new GridBagLayout();\r
  85   GridBagLayout gridBagLayout3 = new GridBagLayout();\r
  86   protected JComboBox sortby = new JComboBox();\r
  87   JLabel sortLabel = new JLabel();\r
  88   JPanel jPanel2 = new JPanel();\r
  89   GridLayout gridLayout2 = new GridLayout();\r
  90   JPanel jPanel3 = new JPanel();\r
  91   JPanel exportTab = new JPanel();\r
  92   JLabel epsLabel = new JLabel();\r
  93   protected JComboBox epsRendering = new JComboBox();\r
  94   JLabel jLabel1 = new JLabel();\r
  95   JLabel jLabel2 = new JLabel();\r
  96   protected JCheckBox pileupdb = new JCheckBox();\r
  97   protected  JCheckBox fastadb = new JCheckBox();\r
  98   protected  JCheckBox blcjv = new JCheckBox();\r
  99   protected  JCheckBox pileupjv = new JCheckBox();\r
 100   protected  JCheckBox msfdb = new JCheckBox();\r
 101   protected  JCheckBox pfamdb = new JCheckBox();\r
 102   protected  JCheckBox clustaljv = new JCheckBox();\r
 103   protected  JCheckBox msfjv = new JCheckBox();\r
 104   protected  JCheckBox blcdb = new JCheckBox();\r
 105   protected  JCheckBox clustaldb = new JCheckBox();\r
 106   protected  JCheckBox fastajv = new JCheckBox();\r
 107   protected  JCheckBox pfamjv = new JCheckBox();\r
 108   JLabel jLabel10 = new JLabel();\r
 109   JLabel jLabel11 = new JLabel();\r
 110   FlowLayout flowLayout1 = new FlowLayout();\r
 111   protected  JCheckBox pirdb = new JCheckBox();\r
 112   protected  JCheckBox pirjv = new JCheckBox();\r
 113   JPanel jPanel11 = new JPanel();\r
 114   GridLayout gridLayout3 = new GridLayout();\r
 115   Font verdana11 = new java.awt.Font("Verdana", Font.PLAIN, 11);\r
 116   /**\r
 117      * Creates a new GPreferences object.\r
 118      */\r
 119     public GPreferences()\r
 120     {\r
 121         try\r
 122         {\r
 123             jbInit();\r
 124         }\r
 125         catch (Exception ex)\r
 126         {\r
 127             ex.printStackTrace();\r
 128         }\r
 129     }\r
 130 \r
 131     /**\r
 132      * DOCUMENT ME!\r
 133      *\r
 134      * @throws Exception DOCUMENT ME!\r
 135      */\r
 136     private void jbInit() throws Exception\r
 137     {\r
 138         this.setLayout(borderLayout1);\r
 139         ok.setText("OK");\r
 140         ok.addActionListener(new ActionListener()\r
 141             {\r
 142                 public void actionPerformed(ActionEvent e)\r
 143                 {\r
 144                     ok_actionPerformed(e);\r
 145                 }\r
 146             });\r
 147         cancel.setText("Cancel");\r
 148         cancel.addActionListener(new ActionListener()\r
 149             {\r
 150                 public void actionPerformed(ActionEvent e)\r
 151                 {\r
 152                     cancel_actionPerformed(e);\r
 153                 }\r
 154             });\r
 155         quality.setEnabled(false);\r
 156         quality.setFont(verdana11);\r
 157         quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
 158         quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
 159         quality.setSelected(true);\r
 160         quality.setText("Quality");\r
 161     visualTab.setBorder(new TitledBorder("Open new alignment"));\r
 162     visualTab.setLayout(null);\r
 163         fullID.setFont(verdana11);\r
 164         fullID.setHorizontalAlignment(SwingConstants.RIGHT);\r
 165         fullID.setHorizontalTextPosition(SwingConstants.LEFT);\r
 166     fullID.setMargin(new Insets(4, 2, 2, 0));\r
 167     fullID.setText("Full Sequence ID");\r
 168     fullScreen.setFont(verdana11);\r
 169         fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
 170         fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
 171     fullScreen.setMargin(new Insets(2, 2, 2, 0));\r
 172     fullScreen.setText("Maximise Window");\r
 173     conservation.setEnabled(false);\r
 174         conservation.setFont(verdana11);\r
 175         conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
 176         conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
 177         conservation.setSelected(true);\r
 178         conservation.setText("Conservation");\r
 179     identity.setEnabled(false);\r
 180         identity.setFont(verdana11);\r
 181         identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
 182         identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
 183         identity.setSelected(true);\r
 184         identity.setText("Consensus");\r
 185     annotations.setFont(verdana11);\r
 186         annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
 187         annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
 188     annotations.setMargin(new Insets(2, 4, 2, 0));\r
 189     annotations.setSelected(true);\r
 190         annotations.setText("Show Annotations");\r
 191     annotations.addActionListener(new ActionListener()\r
 192             {\r
 193                 public void actionPerformed(ActionEvent e)\r
 194                 {\r
 195                     annotations_actionPerformed(e);\r
 196                 }\r
 197             });\r
 198         gapLabel.setFont(verdana11);\r
 199         gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 200         gapLabel.setText("Gap Symbol ");\r
 201     colour.setFont(verdana11);\r
 202         colour.setBounds(new Rectangle(148, 171, 154, 21));\r
 203         colourLabel.setFont(verdana11);\r
 204         colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 205         colourLabel.setText("Colour ");\r
 206     fontLabel.setFont(verdana11);\r
 207         fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 208         fontLabel.setText("Font ");\r
 209     fontSizeCB.setFont(verdana11);\r
 210         fontSizeCB.setBounds(new Rectangle(317, 111, 49, 21));\r
 211         fontStyleCB.setFont(verdana11);\r
 212         fontStyleCB.setBounds(new Rectangle(365, 111, 70, 21));\r
 213         fontNameCB.setFont(verdana11);\r
 214         fontNameCB.setBounds(new Rectangle(148, 111, 169, 21));\r
 215         gapSymbolCB.setFont(verdana11);\r
 216         gapSymbolCB.setBounds(new Rectangle(148, 141, 67, 21));\r
 217         startupCheckbox.setText("Open file");\r
 218     startupCheckbox.setFont(verdana11);\r
 219         startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
 220         startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
 221         startupCheckbox.setSelected(true);\r
 222         startupFileTextfield.setFont(verdana11);\r
 223         startupFileTextfield.setBounds(new Rectangle(148, 232, 302, 20));\r
 224         startupFileTextfield.addMouseListener(new MouseAdapter()\r
 225             {\r
 226                 public void mouseClicked(MouseEvent e)\r
 227                 {\r
 228                     if (e.getClickCount() > 1)\r
 229                     {\r
 230                         startupFileTextfield_mouseClicked();\r
 231                     }\r
 232                 }\r
 233             });\r
 234 \r
 235      connectTab.setLayout(gridBagLayout3);\r
 236     serverLabel.setText("Address");\r
 237     serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 238     serverLabel.setFont(verdana11);\r
 239     proxyServerTB.setFont(verdana11);\r
 240     proxyPortTB.setFont(verdana11);\r
 241     portLabel.setFont(verdana11);\r
 242     portLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 243     portLabel.setText("Port");\r
 244     browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11));\r
 245     browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);\r
 246     browserLabel.setText("Default Browser (Unix)");\r
 247     defaultBrowser.setFont(verdana11);\r
 248     defaultBrowser.setText("");\r
 249     newLink.setText("New");\r
 250     newLink.addActionListener(new java.awt.event.ActionListener() {\r
 251       public void actionPerformed(ActionEvent e) {\r
 252         newLink_actionPerformed(e);\r
 253       }\r
 254     });\r
 255     editLink.setText("Edit");\r
 256     editLink.addActionListener(new java.awt.event.ActionListener() {\r
 257       public void actionPerformed(ActionEvent e) {\r
 258         editLink_actionPerformed(e);\r
 259       }\r
 260     });\r
 261     deleteLink.setText("Delete");\r
 262     deleteLink.addActionListener(new java.awt.event.ActionListener() {\r
 263       public void actionPerformed(ActionEvent e) {\r
 264         deleteLink_actionPerformed(e);\r
 265       }\r
 266     });\r
 267 \r
 268     linkURLList.addListSelectionListener(new ListSelectionListener()\r
 269          {\r
 270             public void valueChanged(ListSelectionEvent e)\r
 271             {\r
 272                int index = linkURLList.getSelectedIndex();\r
 273                linkNameList.setSelectedIndex(index);\r
 274             }\r
 275          });\r
 276 \r
 277     linkNameList.addListSelectionListener(new ListSelectionListener()\r
 278         {\r
 279           public void valueChanged(ListSelectionEvent e)\r
 280           {\r
 281               int index = linkNameList.getSelectedIndex();\r
 282               linkURLList.setSelectedIndex(index);\r
 283           }\r
 284         });\r
 285 \r
 286     linkScrollPane.setBorder(null);\r
 287     linkPanel.setBorder(new TitledBorder("URL link from Sequence ID"));\r
 288     linkPanel.setLayout(borderLayout2);\r
 289     editLinkButtons.setLayout(gridLayout1);\r
 290     gridLayout1.setRows(3);\r
 291     linkNameList.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));\r
 292     linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
 293     linkPanel2.setLayout(borderLayout3);\r
 294     linkURLList.setFont(verdana11);\r
 295     linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
 296 \r
 297     defaultBrowser.addMouseListener(new MouseAdapter()\r
 298     {\r
 299       public void mouseClicked(MouseEvent e)\r
 300       {\r
 301         if (e.getClickCount() > 1)\r
 302             {\r
 303               defaultBrowser_mouseClicked(e);\r
 304             }\r
 305       }\r
 306     });\r
 307     useProxy.setFont(verdana11);\r
 308     useProxy.setHorizontalAlignment(SwingConstants.RIGHT);\r
 309     useProxy.setHorizontalTextPosition(SwingConstants.LEADING);\r
 310     useProxy.setText("Use a proxy server");\r
 311     useProxy.addActionListener(new ActionListener()\r
 312     {\r
 313       public void actionPerformed(ActionEvent e)\r
 314       {\r
 315         useProxy_actionPerformed();\r
 316       }\r
 317     });\r
 318     jPanel1.setBorder(titledBorder1);\r
 319     jPanel1.setLayout(gridBagLayout1);\r
 320     sortby.setFont(verdana11);\r
 321     sortby.setBounds(new Rectangle(148, 200, 302, 21));\r
 322     sortLabel.setFont(verdana11);\r
 323     sortLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 324     sortLabel.setText("Sort by ");\r
 325     jPanel2.setBounds(new Rectangle(7, 17, 138, 242));\r
 326     jPanel2.setLayout(gridLayout2);\r
 327     gridLayout2.setRows(8);\r
 328     jPanel3.setBounds(new Rectangle(147, 46, 274, 26));\r
 329     exportTab.setLayout(null);\r
 330     epsLabel.setFont(verdana11);\r
 331     epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 332     epsLabel.setText("EPS Rendering Style");\r
 333     epsLabel.setBounds(new Rectangle(9, 31, 140, 24));\r
 334     epsRendering.setFont(verdana11);\r
 335     epsRendering.setBounds(new Rectangle(154, 34, 187, 21));\r
 336     jLabel1.setFont(verdana11);\r
 337     jLabel1.setHorizontalAlignment(SwingConstants.CENTER);\r
 338     jLabel1.setText("/start-end suffix");\r
 339     jLabel2.setFont(verdana11);\r
 340     jLabel2.setHorizontalAlignment(SwingConstants.RIGHT);\r
 341     jLabel2.setHorizontalTextPosition(SwingConstants.RIGHT);\r
 342     jLabel2.setText("Database ref prefix");\r
 343     jLabel1.setFont(verdana11);\r
 344     jLabel2.setFont(verdana11);\r
 345     fastajv.setFont(verdana11);\r
 346     fastajv.setHorizontalAlignment(SwingConstants.CENTER);\r
 347     jLabel10.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));\r
 348     jLabel10.setHorizontalAlignment(SwingConstants.RIGHT);\r
 349     jLabel10.setText("(Uniprot|P02055)");\r
 350     jLabel11.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));\r
 351     jLabel11.setHorizontalAlignment(SwingConstants.CENTER);\r
 352     jLabel11.setText("(/15-380)");\r
 353     clustaldb.setFont(verdana11);\r
 354     clustaldb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 355     clustaldb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 356     clustaldb.setText("Clustal     ");\r
 357     blcdb.setFont(verdana11);\r
 358     blcdb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 359     blcdb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 360     blcdb.setText("BLC     ");\r
 361     fastadb.setFont(verdana11);\r
 362     fastadb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 363     fastadb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 364     fastadb.setText("Fasta     ");\r
 365     msfdb.setFont(verdana11);\r
 366     msfdb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 367     msfdb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 368     msfdb.setText("MSF     ");\r
 369     pfamdb.setFont(verdana11);\r
 370     pfamdb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 371     pfamdb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 372     pfamdb.setText("PFAM     ");\r
 373     pileupdb.setFont(verdana11);\r
 374     pileupdb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 375     pileupdb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 376     pileupdb.setText("Pileup     ");\r
 377     msfjv.setFont(verdana11);\r
 378     msfjv.setHorizontalAlignment(SwingConstants.CENTER);\r
 379     pirdb.setFont(verdana11);\r
 380     pirdb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 381     pirdb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 382     pirdb.setText("PIR     ");\r
 383     jPanel11.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
 384     jPanel11.setBorder(titledBorder2);\r
 385     jPanel11.setBounds(new Rectangle(18, 72, 325, 182));\r
 386     jPanel11.setLayout(gridLayout3);\r
 387     gridLayout3.setColumns(2);\r
 388     gridLayout3.setRows(9);\r
 389     blcjv.setFont(verdana11);\r
 390     blcjv.setHorizontalAlignment(SwingConstants.CENTER);\r
 391     clustaljv.setFont(verdana11);\r
 392     clustaljv.setHorizontalAlignment(SwingConstants.CENTER);\r
 393     pfamjv.setFont(verdana11);\r
 394     pfamjv.setHorizontalAlignment(SwingConstants.CENTER);\r
 395     pileupjv.setFont(verdana11);\r
 396     pileupjv.setHorizontalAlignment(SwingConstants.CENTER);\r
 397     pirjv.setFont(verdana11);\r
 398     pirjv.setHorizontalAlignment(SwingConstants.CENTER);\r
 399     jPanel2.add(fullScreen);\r
 400     jPanel2.add(annotations);\r
 401     jPanel2.add(fullID);\r
 402     jPanel2.add(fontLabel);\r
 403     jPanel2.add(gapLabel);\r
 404     jPanel2.add(colourLabel);\r
 405     jPanel2.add(sortLabel);\r
 406     jPanel2.add(startupCheckbox);\r
 407     visualTab.add(jPanel3);\r
 408     jPanel3.add(conservation);\r
 409     jPanel3.add(quality);\r
 410     jPanel3.add(identity);\r
 411     visualTab.add(sortby);\r
 412     visualTab.add(colour);\r
 413     visualTab.add(startupFileTextfield);\r
 414     visualTab.add(fontNameCB);\r
 415     visualTab.add(fontSizeCB);\r
 416     visualTab.add(fontStyleCB);\r
 417     visualTab.add(gapSymbolCB);\r
 418     visualTab.add(jPanel2);\r
 419 \r
 420     linkPanel.add(editLinkButtons, BorderLayout.EAST);\r
 421     editLinkButtons.add(newLink, null);\r
 422     editLinkButtons.add(editLink, null);\r
 423     editLinkButtons.add(deleteLink, null);\r
 424     linkPanel.add(linkScrollPane, BorderLayout.CENTER);\r
 425     linkScrollPane.getViewport().add(linkPanel2, null);\r
 426     linkPanel2.add(linkURLList, BorderLayout.CENTER);\r
 427     linkPanel2.add(linkNameList, BorderLayout.WEST);\r
 428         okCancelPanel.add(ok);\r
 429         okCancelPanel.add(cancel);\r
 430     this.add(tabbedPane, java.awt.BorderLayout.CENTER);\r
 431 \r
 432         this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
 433     jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
 434         , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
 435         new Insets(0, 2, 4, 0), 5, 0));\r
 436     jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0\r
 437                                                   , GridBagConstraints.WEST,\r
 438                                                   GridBagConstraints.NONE,\r
 439                                                   new Insets(0, 0, 4, 0), 11, 6));\r
 440     connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0\r
 441         , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
 442         new Insets(16, 0, 0, 12), 359, -17));\r
 443     connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0\r
 444         , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
 445         new Insets(21, 0, 35, 12), 4, 6));\r
 446     connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
 447         , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
 448         new Insets(16, 0, 0, 0), 5, 1));\r
 449     jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0\r
 450         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 451         new Insets(0, 2, 4, 2), 54, 1));\r
 452     jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
 453         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 454         new Insets(0, 2, 4, 0), 263, 1));\r
 455     connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
 456         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 457         new Insets(15, 0, 0, 15), 307, 1));\r
 458 \r
 459 \r
 460     jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0\r
 461                                                  , GridBagConstraints.WEST,\r
 462                                                  GridBagConstraints.NONE,\r
 463                                                  new Insets(0, 2, 5, 185), 2,\r
 464                                                  -4));\r
 465     DefaultListCellRenderer dlcr = new DefaultListCellRenderer();\r
 466         dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
 467         gapSymbolCB.setRenderer(dlcr);\r
 468 \r
 469     tabbedPane.add(visualTab, "Visual");\r
 470     tabbedPane.add(connectTab,"Connections");\r
 471     tabbedPane.add(exportTab, "File");\r
 472     jPanel11.add(jLabel2);\r
 473     jPanel11.add(jLabel1);\r
 474     jPanel11.add(jLabel10);\r
 475     jPanel11.add(jLabel11);\r
 476     jPanel11.add(blcdb);\r
 477     jPanel11.add(blcjv);\r
 478     jPanel11.add(clustaldb);\r
 479     jPanel11.add(clustaljv);\r
 480     jPanel11.add(fastadb);\r
 481     jPanel11.add(fastajv);\r
 482     jPanel11.add(msfdb);\r
 483     jPanel11.add(msfjv);\r
 484     jPanel11.add(pfamdb);\r
 485     jPanel11.add(pfamjv);\r
 486     jPanel11.add(pileupdb);\r
 487     jPanel11.add(pileupjv);\r
 488     jPanel11.add(pirdb);\r
 489     jPanel11.add(pirjv);\r
 490     exportTab.add(epsLabel);\r
 491     exportTab.add(epsRendering);\r
 492     exportTab.add(jPanel11);\r
 493   }\r
 494 \r
 495     /**\r
 496      * DOCUMENT ME!\r
 497      *\r
 498      * @param e DOCUMENT ME!\r
 499      */\r
 500     public void ok_actionPerformed(ActionEvent e)\r
 501     {\r
 502     }\r
 503 \r
 504     /**\r
 505      * DOCUMENT ME!\r
 506      *\r
 507      * @param e DOCUMENT ME!\r
 508      */\r
 509     public void cancel_actionPerformed(ActionEvent e)\r
 510     {\r
 511     }\r
 512 \r
 513     /**\r
 514      * DOCUMENT ME!\r
 515      *\r
 516      * @param e DOCUMENT ME!\r
 517      */\r
 518     public void annotations_actionPerformed(ActionEvent e)\r
 519     {\r
 520     }\r
 521 \r
 522 \r
 523     /**\r
 524      * DOCUMENT ME!\r
 525      */\r
 526     public void startupFileTextfield_mouseClicked()\r
 527     {\r
 528     }\r
 529 \r
 530 \r
 531   public void newLink_actionPerformed(ActionEvent e) {\r
 532 \r
 533   }\r
 534 \r
 535   public void editLink_actionPerformed(ActionEvent e) {\r
 536 \r
 537   }\r
 538 \r
 539   public void deleteLink_actionPerformed(ActionEvent e) {\r
 540 \r
 541   }\r
 542 \r
 543   public void defaultBrowser_mouseClicked(MouseEvent e)\r
 544   {\r
 545 \r
 546   }\r
 547 \r
 548   public void linkURLList_keyTyped(KeyEvent e)\r
 549   {\r
 550 \r
 551   }\r
 552 \r
 553   public void useProxy_actionPerformed()\r
 554   {\r
 555       proxyServerTB.setEnabled(useProxy.isSelected());\r
 556       proxyPortTB.setEnabled(useProxy.isSelected());\r
 557   }\r
 558 }\r