after merge
[jalview.git] / src / jalview / jbgui / GPreferences.java
1 /*\r
2 * Jalview - A Sequence Alignment Editor and Viewer\r
3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
4 *\r
5 * This program is free software; you can redistribute it and/or\r
6 * modify it under the terms of the GNU General Public License\r
7 * as published by the Free Software Foundation; either version 2\r
8 * of the License, or (at your option) any later version.\r
9 *\r
10 * This program is distributed in the hope that it will be useful,\r
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
13 * GNU General Public License for more details.\r
14 *\r
15 * You should have received a copy of the GNU General Public License\r
16 * along with this program; if not, write to the Free Software\r
17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
18 */\r
19 package jalview.jbgui;\r
20 \r
21 import java.awt.*;\r
22 \r
23 import javax.swing.*;\r
24 import javax.swing.border.TitledBorder;\r
25 import java.awt.event.*;\r
26 import javax.swing.event.*;\r
27 \r
28 \r
29 /**\r
30  * DOCUMENT ME!\r
31  *\r
32  * @author $author$\r
33  * @version $Revision$\r
34  */\r
35 public class GPreferences extends JPanel\r
36 {\r
37     JTabbedPane tabbedPane = new JTabbedPane();\r
38 \r
39     JButton ok = new JButton();\r
40     JButton cancel = new JButton();\r
41     JPanel okCancelPanel = new JPanel();\r
42     BorderLayout borderLayout1 = new BorderLayout();\r
43     protected JCheckBox quality = new JCheckBox();\r
44     JPanel visualTab = new JPanel();\r
45   protected JCheckBox fullScreen = new JCheckBox();\r
46     protected JCheckBox conservation = new JCheckBox();\r
47     protected JCheckBox identity = new JCheckBox();\r
48     protected JCheckBox annotations = new JCheckBox();\r
49     JLabel gapLabel = new JLabel();\r
50     protected JComboBox colour = new JComboBox();\r
51     JLabel colourLabel = new JLabel();\r
52     JLabel fontLabel = new JLabel();\r
53     protected JComboBox fontSizeCB = new JComboBox();\r
54     protected JComboBox fontStyleCB = new JComboBox();\r
55     protected JComboBox fontNameCB = new JComboBox();\r
56     protected JComboBox gapSymbolCB = new JComboBox();\r
57     protected JCheckBox startupCheckbox = new JCheckBox();\r
58     protected JTextField startupFileTextfield = new JTextField();\r
59   JPanel connectTab = new JPanel();\r
60   JLabel serverLabel = new JLabel();\r
61   protected JList linkURLList = new JList();\r
62   protected JTextField proxyServerTB = new JTextField();\r
63   protected JTextField proxyPortTB = new JTextField();\r
64   JLabel portLabel = new JLabel();\r
65   JLabel browserLabel = new JLabel();\r
66   protected JTextField defaultBrowser = new JTextField();\r
67   JButton newLink = new JButton();\r
68   JButton editLink = new JButton();\r
69   JButton deleteLink = new JButton();\r
70   JScrollPane linkScrollPane = new JScrollPane();\r
71   JPanel linkPanel = new JPanel();\r
72   BorderLayout borderLayout2 = new BorderLayout();\r
73   JPanel editLinkButtons = new JPanel();\r
74   GridLayout gridLayout1 = new GridLayout();\r
75   protected JList linkNameList = new JList();\r
76   JPanel linkPanel2 = new JPanel();\r
77   BorderLayout borderLayout3 = new BorderLayout();\r
78   protected JCheckBox useProxy = new JCheckBox();\r
79   JPanel jPanel1 = new JPanel();\r
80   TitledBorder titledBorder1 = new TitledBorder("Proxy Server");\r
81   TitledBorder titledBorder2 = new TitledBorder("File Output");\r
82   GridBagLayout gridBagLayout2 = new GridBagLayout();\r
83   GridBagLayout gridBagLayout1 = new GridBagLayout();\r
84   GridBagLayout gridBagLayout3 = new GridBagLayout();\r
85   protected JComboBox sortby = new JComboBox();\r
86   JLabel sortLabel = new JLabel();\r
87   JPanel jPanel2 = new JPanel();\r
88   GridLayout gridLayout2 = new GridLayout();\r
89   JPanel jPanel3 = new JPanel();\r
90   JPanel exportTab = new JPanel();\r
91   JLabel epsLabel = new JLabel();\r
92   protected JComboBox epsRendering = new JComboBox();\r
93   JLabel jLabel1 = new JLabel();\r
94   protected  JCheckBox blcjv = new JCheckBox();\r
95   protected  JCheckBox pileupjv = new JCheckBox();\r
96   protected  JCheckBox clustaljv = new JCheckBox();\r
97   protected  JCheckBox msfjv = new JCheckBox();\r
98   protected  JCheckBox fastajv = new JCheckBox();\r
99   protected  JCheckBox pfamjv = new JCheckBox();\r
100   FlowLayout flowLayout1 = new FlowLayout();\r
101   protected  JCheckBox pirjv = new JCheckBox();\r
102   JPanel jPanel11 = new JPanel();\r
103   Font verdana11 = new java.awt.Font("Verdana", Font.PLAIN, 11);\r
104   protected JCheckBox seqLimit = new JCheckBox();\r
105   GridLayout gridLayout3 = new GridLayout();\r
106   /**\r
107      * Creates a new GPreferences object.\r
108      */\r
109     public GPreferences()\r
110     {\r
111         try\r
112         {\r
113             jbInit();\r
114         }\r
115         catch (Exception ex)\r
116         {\r
117             ex.printStackTrace();\r
118         }\r
119     }\r
120 \r
121     /**\r
122      * DOCUMENT ME!\r
123      *\r
124      * @throws Exception DOCUMENT ME!\r
125      */\r
126     private void jbInit() throws Exception\r
127     {\r
128         this.setLayout(borderLayout1);\r
129         ok.setText("OK");\r
130         ok.addActionListener(new ActionListener()\r
131             {\r
132                 public void actionPerformed(ActionEvent e)\r
133                 {\r
134                     ok_actionPerformed(e);\r
135                 }\r
136             });\r
137         cancel.setText("Cancel");\r
138         cancel.addActionListener(new ActionListener()\r
139             {\r
140                 public void actionPerformed(ActionEvent e)\r
141                 {\r
142                     cancel_actionPerformed(e);\r
143                 }\r
144             });\r
145         quality.setEnabled(false);\r
146         quality.setFont(verdana11);\r
147         quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
148         quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
149         quality.setSelected(true);\r
150         quality.setText("Quality");\r
151     visualTab.setBorder(new TitledBorder("Open new alignment"));\r
152     visualTab.setLayout(null);\r
153     fullScreen.setFont(verdana11);\r
154         fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
155         fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
156     fullScreen.setMargin(new Insets(2, 2, 2, 0));\r
157     fullScreen.setText("Maximise Window");\r
158     conservation.setEnabled(false);\r
159         conservation.setFont(verdana11);\r
160         conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
161         conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
162         conservation.setSelected(true);\r
163         conservation.setText("Conservation");\r
164     identity.setEnabled(false);\r
165         identity.setFont(verdana11);\r
166         identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
167         identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
168         identity.setSelected(true);\r
169         identity.setText("Consensus");\r
170     annotations.setFont(verdana11);\r
171         annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
172         annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
173     annotations.setMargin(new Insets(2, 4, 2, 0));\r
174     annotations.setSelected(true);\r
175         annotations.setText("Show Annotations");\r
176     annotations.addActionListener(new ActionListener()\r
177             {\r
178                 public void actionPerformed(ActionEvent e)\r
179                 {\r
180                     annotations_actionPerformed(e);\r
181                 }\r
182             });\r
183         gapLabel.setFont(verdana11);\r
184         gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
185         gapLabel.setText("Gap Symbol ");\r
186     colour.setFont(verdana11);\r
187         colour.setBounds(new Rectangle(170, 170, 155, 21));\r
188         colourLabel.setFont(verdana11);\r
189         colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
190         colourLabel.setText("Colour ");\r
191     fontLabel.setFont(verdana11);\r
192         fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
193         fontLabel.setText("Font ");\r
194     fontSizeCB.setFont(verdana11);\r
195         fontSizeCB.setBounds(new Rectangle(317, 111, 49, 21));\r
196         fontStyleCB.setFont(verdana11);\r
197         fontStyleCB.setBounds(new Rectangle(365, 111, 70, 21));\r
198         fontNameCB.setFont(verdana11);\r
199         fontNameCB.setBounds(new Rectangle(170, 111, 147, 21));\r
200         gapSymbolCB.setFont(verdana11);\r
201         gapSymbolCB.setBounds(new Rectangle(170, 141, 69, 21));\r
202         startupCheckbox.setText("Open file");\r
203     startupCheckbox.setFont(verdana11);\r
204         startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
205         startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
206         startupCheckbox.setSelected(true);\r
207         startupFileTextfield.setFont(verdana11);\r
208         startupFileTextfield.setBounds(new Rectangle(170, 232, 271, 20));\r
209         startupFileTextfield.addMouseListener(new MouseAdapter()\r
210             {\r
211                 public void mouseClicked(MouseEvent e)\r
212                 {\r
213                     if (e.getClickCount() > 1)\r
214                     {\r
215                         startupFileTextfield_mouseClicked();\r
216                     }\r
217                 }\r
218             });\r
219 \r
220      connectTab.setLayout(gridBagLayout3);\r
221     serverLabel.setText("Address");\r
222     serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
223     serverLabel.setFont(verdana11);\r
224     proxyServerTB.setFont(verdana11);\r
225     proxyPortTB.setFont(verdana11);\r
226     portLabel.setFont(verdana11);\r
227     portLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
228     portLabel.setText("Port");\r
229     browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11));\r
230     browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);\r
231     browserLabel.setText("Default Browser (Unix)");\r
232     defaultBrowser.setFont(verdana11);\r
233     defaultBrowser.setText("");\r
234     newLink.setText("New");\r
235     newLink.addActionListener(new java.awt.event.ActionListener() {\r
236       public void actionPerformed(ActionEvent e) {\r
237         newLink_actionPerformed(e);\r
238       }\r
239     });\r
240     editLink.setText("Edit");\r
241     editLink.addActionListener(new java.awt.event.ActionListener() {\r
242       public void actionPerformed(ActionEvent e) {\r
243         editLink_actionPerformed(e);\r
244       }\r
245     });\r
246     deleteLink.setText("Delete");\r
247     deleteLink.addActionListener(new java.awt.event.ActionListener() {\r
248       public void actionPerformed(ActionEvent e) {\r
249         deleteLink_actionPerformed(e);\r
250       }\r
251     });\r
252 \r
253     linkURLList.addListSelectionListener(new ListSelectionListener()\r
254          {\r
255             public void valueChanged(ListSelectionEvent e)\r
256             {\r
257                int index = linkURLList.getSelectedIndex();\r
258                linkNameList.setSelectedIndex(index);\r
259             }\r
260          });\r
261 \r
262     linkNameList.addListSelectionListener(new ListSelectionListener()\r
263         {\r
264           public void valueChanged(ListSelectionEvent e)\r
265           {\r
266               int index = linkNameList.getSelectedIndex();\r
267               linkURLList.setSelectedIndex(index);\r
268           }\r
269         });\r
270 \r
271     linkScrollPane.setBorder(null);\r
272     linkPanel.setBorder(new TitledBorder("URL link from Sequence ID"));\r
273     linkPanel.setLayout(borderLayout2);\r
274     editLinkButtons.setLayout(gridLayout1);\r
275     gridLayout1.setRows(3);\r
276     linkNameList.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));\r
277     linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
278     linkPanel2.setLayout(borderLayout3);\r
279     linkURLList.setFont(verdana11);\r
280     linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
281 \r
282     defaultBrowser.addMouseListener(new MouseAdapter()\r
283     {\r
284       public void mouseClicked(MouseEvent e)\r
285       {\r
286         if (e.getClickCount() > 1)\r
287             {\r
288               defaultBrowser_mouseClicked(e);\r
289             }\r
290       }\r
291     });\r
292     useProxy.setFont(verdana11);\r
293     useProxy.setHorizontalAlignment(SwingConstants.RIGHT);\r
294     useProxy.setHorizontalTextPosition(SwingConstants.LEADING);\r
295     useProxy.setText("Use a proxy server");\r
296     useProxy.addActionListener(new ActionListener()\r
297     {\r
298       public void actionPerformed(ActionEvent e)\r
299       {\r
300         useProxy_actionPerformed();\r
301       }\r
302     });\r
303     jPanel1.setBorder(titledBorder1);\r
304     jPanel1.setLayout(gridBagLayout1);\r
305     sortby.setFont(verdana11);\r
306     sortby.setBounds(new Rectangle(170, 200, 155, 21));\r
307     sortLabel.setFont(verdana11);\r
308     sortLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
309     sortLabel.setText("Sort by ");\r
310     jPanel2.setBounds(new Rectangle(7, 17, 158, 242));\r
311     jPanel2.setLayout(gridLayout2);\r
312     gridLayout2.setRows(8);\r
313     jPanel3.setBounds(new Rectangle(168, 47, 274, 26));\r
314     exportTab.setLayout(null);\r
315     epsLabel.setFont(verdana11);\r
316     epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
317     epsLabel.setText("EPS Rendering Style");\r
318     epsLabel.setBounds(new Rectangle(9, 31, 140, 24));\r
319     epsRendering.setFont(verdana11);\r
320     epsRendering.setBounds(new Rectangle(154, 34, 187, 21));\r
321     jLabel1.setFont(verdana11);\r
322     jLabel1.setHorizontalAlignment(SwingConstants.CENTER);\r
323     jLabel1.setText("Append /start-end (/15-380)");\r
324     jLabel1.setFont(verdana11);\r
325     fastajv.setFont(verdana11);\r
326     fastajv.setHorizontalAlignment(SwingConstants.LEFT);\r
327     clustaljv.setText("Clustal     ");\r
328     blcjv.setText("BLC     ");\r
329     fastajv.setText("Fasta     ");\r
330     msfjv.setText("MSF     ");\r
331     pfamjv.setText("PFAM     ");\r
332     pileupjv.setText("Pileup     ");\r
333     msfjv.setFont(verdana11);\r
334     msfjv.setHorizontalAlignment(SwingConstants.LEFT);\r
335     pirjv.setText("PIR     ");\r
336     jPanel11.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
337     jPanel11.setBorder(titledBorder2);\r
338     jPanel11.setBounds(new Rectangle(30, 72, 196, 182));\r
339     jPanel11.setLayout(gridLayout3);\r
340     blcjv.setFont(verdana11);\r
341     blcjv.setHorizontalAlignment(SwingConstants.LEFT);\r
342     clustaljv.setFont(verdana11);\r
343     clustaljv.setHorizontalAlignment(SwingConstants.LEFT);\r
344     pfamjv.setFont(verdana11);\r
345     pfamjv.setHorizontalAlignment(SwingConstants.LEFT);\r
346     pileupjv.setFont(verdana11);\r
347     pileupjv.setHorizontalAlignment(SwingConstants.LEFT);\r
348     pirjv.setFont(verdana11);\r
349     pirjv.setHorizontalAlignment(SwingConstants.LEFT);\r
350     seqLimit.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
351     seqLimit.setHorizontalAlignment(SwingConstants.RIGHT);\r
352     seqLimit.setHorizontalTextPosition(SwingConstants.LEADING);\r
353     seqLimit.setText("Full Sequence Id");\r
354     gridLayout3.setRows(8);\r
355     jPanel2.add(fullScreen);\r
356     jPanel2.add(annotations);\r
357     jPanel2.add(seqLimit);\r
358     jPanel2.add(fontLabel);\r
359     jPanel2.add(gapLabel);\r
360     jPanel2.add(colourLabel);\r
361     jPanel2.add(sortLabel);\r
362     jPanel2.add(startupCheckbox);\r
363     visualTab.add(gapSymbolCB);\r
364     visualTab.add(colour);\r
365     visualTab.add(jPanel3);\r
366     jPanel3.add(conservation);\r
367     jPanel3.add(identity);\r
368     jPanel3.add(quality);\r
369     visualTab.add(sortby);\r
370     visualTab.add(startupFileTextfield);\r
371     visualTab.add(fontNameCB);\r
372     visualTab.add(fontSizeCB);\r
373     visualTab.add(fontStyleCB);\r
374     visualTab.add(jPanel2);\r
375     linkPanel.add(editLinkButtons, BorderLayout.EAST);\r
376     editLinkButtons.add(newLink, null);\r
377     editLinkButtons.add(editLink, null);\r
378     editLinkButtons.add(deleteLink, null);\r
379     linkPanel.add(linkScrollPane, BorderLayout.CENTER);\r
380     linkScrollPane.getViewport().add(linkPanel2, null);\r
381     linkPanel2.add(linkURLList, BorderLayout.CENTER);\r
382     linkPanel2.add(linkNameList, BorderLayout.WEST);\r
383         okCancelPanel.add(ok);\r
384         okCancelPanel.add(cancel);\r
385     this.add(tabbedPane, java.awt.BorderLayout.CENTER);\r
386 \r
387         this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
388     jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
389         , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
390         new Insets(0, 2, 4, 0), 5, 0));\r
391     jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0\r
392                                                   , GridBagConstraints.WEST,\r
393                                                   GridBagConstraints.NONE,\r
394                                                   new Insets(0, 0, 4, 0), 11, 6));\r
395     connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0\r
396         , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
397         new Insets(16, 0, 0, 12), 359, -17));\r
398     connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0\r
399         , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
400         new Insets(21, 0, 35, 12), 4, 6));\r
401     connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
402         , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
403         new Insets(16, 0, 0, 0), 5, 1));\r
404     jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0\r
405         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
406         new Insets(0, 2, 4, 2), 54, 1));\r
407     jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
408         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
409         new Insets(0, 2, 4, 0), 263, 1));\r
410     connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
411         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
412         new Insets(15, 0, 0, 15), 307, 1));\r
413 \r
414 \r
415     jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0\r
416                                                  , GridBagConstraints.WEST,\r
417                                                  GridBagConstraints.NONE,\r
418                                                  new Insets(0, 2, 5, 185), 2,\r
419                                                  -4));\r
420     DefaultListCellRenderer dlcr = new DefaultListCellRenderer();\r
421         dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
422         gapSymbolCB.setRenderer(dlcr);\r
423 \r
424     tabbedPane.add(visualTab, "Visual");\r
425     tabbedPane.add(connectTab,"Connections");\r
426     tabbedPane.add(exportTab, "Output");\r
427     jPanel11.add(jLabel1);\r
428     jPanel11.add(blcjv);\r
429     jPanel11.add(clustaljv);\r
430     jPanel11.add(fastajv);\r
431     jPanel11.add(msfjv);\r
432     jPanel11.add(pfamjv);\r
433     jPanel11.add(pileupjv);\r
434     jPanel11.add(pirjv);\r
435     exportTab.add(epsLabel);\r
436     exportTab.add(epsRendering);\r
437     exportTab.add(jPanel11);\r
438   }\r
439 \r
440     /**\r
441      * DOCUMENT ME!\r
442      *\r
443      * @param e DOCUMENT ME!\r
444      */\r
445     public void ok_actionPerformed(ActionEvent e)\r
446     {\r
447     }\r
448 \r
449     /**\r
450      * DOCUMENT ME!\r
451      *\r
452      * @param e DOCUMENT ME!\r
453      */\r
454     public void cancel_actionPerformed(ActionEvent e)\r
455     {\r
456     }\r
457 \r
458     /**\r
459      * DOCUMENT ME!\r
460      *\r
461      * @param e DOCUMENT ME!\r
462      */\r
463     public void annotations_actionPerformed(ActionEvent e)\r
464     {\r
465     }\r
466 \r
467 \r
468     /**\r
469      * DOCUMENT ME!\r
470      */\r
471     public void startupFileTextfield_mouseClicked()\r
472     {\r
473     }\r
474 \r
475 \r
476   public void newLink_actionPerformed(ActionEvent e) {\r
477 \r
478   }\r
479 \r
480   public void editLink_actionPerformed(ActionEvent e) {\r
481 \r
482   }\r
483 \r
484   public void deleteLink_actionPerformed(ActionEvent e) {\r
485 \r
486   }\r
487 \r
488   public void defaultBrowser_mouseClicked(MouseEvent e)\r
489   {\r
490 \r
491   }\r
492 \r
493   public void linkURLList_keyTyped(KeyEvent e)\r
494   {\r
495 \r
496   }\r
497 \r
498   public void useProxy_actionPerformed()\r
499   {\r
500       proxyServerTB.setEnabled(useProxy.isSelected());\r
501       proxyPortTB.setEnabled(useProxy.isSelected());\r
502   }\r
503 }\r