2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.jbgui;
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23 import javax.swing.*;
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24 import javax.swing.border.TitledBorder;
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25 import java.awt.event.*;
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26 import javax.swing.event.*;
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33 * @version $Revision$
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35 public class GPreferences extends JPanel
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37 JTabbedPane tabbedPane = new JTabbedPane();
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39 JButton ok = new JButton();
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40 JButton cancel = new JButton();
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41 JPanel okCancelPanel = new JPanel();
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42 BorderLayout borderLayout1 = new BorderLayout();
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43 protected JCheckBox quality = new JCheckBox();
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44 JPanel visualTab = new JPanel();
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45 protected JCheckBox fullID = new JCheckBox();
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46 protected JCheckBox fullScreen = new JCheckBox();
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47 protected JCheckBox conservation = new JCheckBox();
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48 protected JCheckBox identity = new JCheckBox();
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49 protected JCheckBox annotations = new JCheckBox();
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50 JLabel gapLabel = new JLabel();
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51 protected JComboBox colour = new JComboBox();
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52 JLabel colourLabel = new JLabel();
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53 JLabel fontLabel = new JLabel();
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54 protected JComboBox fontSizeCB = new JComboBox();
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55 protected JComboBox fontStyleCB = new JComboBox();
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56 protected JComboBox fontNameCB = new JComboBox();
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57 protected JComboBox gapSymbolCB = new JComboBox();
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58 protected JCheckBox startupCheckbox = new JCheckBox();
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59 protected JTextField startupFileTextfield = new JTextField();
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60 JPanel connectTab = new JPanel();
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61 JLabel serverLabel = new JLabel();
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62 protected JList linkURLList = new JList();
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63 protected JTextField proxyServerTB = new JTextField();
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64 protected JTextField proxyPortTB = new JTextField();
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65 JLabel portLabel = new JLabel();
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66 JLabel browserLabel = new JLabel();
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67 protected JTextField defaultBrowser = new JTextField();
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68 JButton newLink = new JButton();
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69 JButton editLink = new JButton();
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70 JButton deleteLink = new JButton();
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71 JScrollPane linkScrollPane = new JScrollPane();
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72 JPanel linkPanel = new JPanel();
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73 BorderLayout borderLayout2 = new BorderLayout();
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74 JPanel editLinkButtons = new JPanel();
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75 GridLayout gridLayout1 = new GridLayout();
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76 protected JList linkNameList = new JList();
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77 JPanel linkPanel2 = new JPanel();
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78 BorderLayout borderLayout3 = new BorderLayout();
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79 protected JCheckBox useProxy = new JCheckBox();
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80 JPanel jPanel1 = new JPanel();
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81 TitledBorder titledBorder1 = new TitledBorder("Proxy Server");
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82 GridBagLayout gridBagLayout2 = new GridBagLayout();
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83 GridBagLayout gridBagLayout1 = new GridBagLayout();
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84 GridBagLayout gridBagLayout3 = new GridBagLayout();
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86 * Creates a new GPreferences object.
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88 public GPreferences()
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94 catch (Exception ex)
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96 ex.printStackTrace();
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103 * @throws Exception DOCUMENT ME!
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105 private void jbInit() throws Exception
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107 this.setLayout(borderLayout1);
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109 ok.addActionListener(new ActionListener()
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111 public void actionPerformed(ActionEvent e)
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113 ok_actionPerformed(e);
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116 cancel.setText("Cancel");
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117 cancel.addActionListener(new ActionListener()
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119 public void actionPerformed(ActionEvent e)
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121 cancel_actionPerformed(e);
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124 quality.setEnabled(false);
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125 quality.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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126 quality.setHorizontalAlignment(SwingConstants.RIGHT);
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127 quality.setHorizontalTextPosition(SwingConstants.LEFT);
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128 quality.setSelected(true);
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129 quality.setText("Quality");
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130 quality.setBounds(new Rectangle(248, 53, 81, 23));
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131 visualTab.setBorder(new TitledBorder("Open new alignment"));
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132 visualTab.setBounds(new Rectangle(9, 20, 442, 241));
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133 visualTab.setLayout(null);
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134 fullID.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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135 fullID.setHorizontalAlignment(SwingConstants.RIGHT);
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136 fullID.setHorizontalTextPosition(SwingConstants.LEFT);
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137 fullID.setText("Full Sequence ID");
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138 fullID.setBounds(new Rectangle(9, 78, 129, 23));
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139 fullScreen.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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140 fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);
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141 fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);
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142 fullScreen.setText("Maximise Window");
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143 fullScreen.setBounds(new Rectangle(5, 29, 132, 23));
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144 conservation.setEnabled(false);
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145 conservation.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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146 conservation.setHorizontalAlignment(SwingConstants.RIGHT);
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147 conservation.setHorizontalTextPosition(SwingConstants.LEFT);
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148 conservation.setSelected(true);
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149 conservation.setText("Conservation");
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150 conservation.setBounds(new Rectangle(137, 53, 113, 23));
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151 identity.setEnabled(false);
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152 identity.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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153 identity.setHorizontalAlignment(SwingConstants.RIGHT);
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154 identity.setHorizontalTextPosition(SwingConstants.LEFT);
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155 identity.setSelected(true);
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156 identity.setText("Consensus");
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157 identity.setBounds(new Rectangle(326, 53, 99, 23));
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158 annotations.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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159 annotations.setHorizontalAlignment(SwingConstants.RIGHT);
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160 annotations.setHorizontalTextPosition(SwingConstants.LEFT);
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161 annotations.setSelected(true);
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162 annotations.setText("Show Annotations");
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163 annotations.setBounds(new Rectangle(10, 53, 128, 23));
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164 annotations.addActionListener(new ActionListener()
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166 public void actionPerformed(ActionEvent e)
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168 annotations_actionPerformed(e);
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171 gapLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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172 gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);
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173 gapLabel.setText("Gap Symbol");
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174 gapLabel.setBounds(new Rectangle(41, 142, 76, 15));
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175 colour.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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176 colour.setBounds(new Rectangle(121, 168, 154, 21));
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177 colourLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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178 colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);
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179 colourLabel.setText("Colour");
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180 colourLabel.setBounds(new Rectangle(60, 172, 58, 15));
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181 fontLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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182 fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);
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183 fontLabel.setText("Font");
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184 fontLabel.setBounds(new Rectangle(83, 114, 34, 15));
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185 fontSizeCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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186 fontSizeCB.setBounds(new Rectangle(304, 109, 49, 21));
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187 fontStyleCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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188 fontStyleCB.setBounds(new Rectangle(353, 109, 80, 21));
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189 fontNameCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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190 fontNameCB.setBounds(new Rectangle(121, 109, 183, 21));
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191 gapSymbolCB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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192 gapSymbolCB.setBounds(new Rectangle(121, 140, 67, 21));
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193 startupCheckbox.setText("Open file");
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194 startupCheckbox.setBounds(new Rectangle(4, 200, 115, 23));
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195 startupCheckbox.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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196 startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);
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197 startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);
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198 startupCheckbox.setSelected(true);
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199 startupFileTextfield.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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200 startupFileTextfield.setBounds(new Rectangle(122, 202, 309, 20));
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201 startupFileTextfield.addMouseListener(new MouseAdapter()
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203 public void mouseClicked(MouseEvent e)
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205 if (e.getClickCount() > 1)
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207 startupFileTextfield_mouseClicked();
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212 connectTab.setLayout(gridBagLayout3);
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213 serverLabel.setText("Address");
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214 serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);
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215 serverLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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216 proxyServerTB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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217 proxyPortTB.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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218 portLabel.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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219 portLabel.setHorizontalAlignment(SwingConstants.RIGHT);
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220 portLabel.setText("Port");
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221 browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11));
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222 browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);
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223 browserLabel.setText("Default Browser (Unix)");
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224 defaultBrowser.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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225 defaultBrowser.setText("");
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226 newLink.setText("New");
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227 newLink.addActionListener(new java.awt.event.ActionListener() {
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228 public void actionPerformed(ActionEvent e) {
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229 newLink_actionPerformed(e);
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232 editLink.setText("Edit");
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233 editLink.addActionListener(new java.awt.event.ActionListener() {
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234 public void actionPerformed(ActionEvent e) {
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235 editLink_actionPerformed(e);
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238 deleteLink.setText("Delete");
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239 deleteLink.addActionListener(new java.awt.event.ActionListener() {
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240 public void actionPerformed(ActionEvent e) {
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241 deleteLink_actionPerformed(e);
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245 linkURLList.addListSelectionListener(new ListSelectionListener()
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247 public void valueChanged(ListSelectionEvent e)
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249 int index = linkURLList.getSelectedIndex();
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250 linkNameList.setSelectedIndex(index);
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254 linkNameList.addListSelectionListener(new ListSelectionListener()
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256 public void valueChanged(ListSelectionEvent e)
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258 int index = linkNameList.getSelectedIndex();
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259 linkURLList.setSelectedIndex(index);
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263 linkScrollPane.setBorder(null);
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264 linkPanel.setBorder(new TitledBorder("URL link from Sequence ID"));
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265 linkPanel.setLayout(borderLayout2);
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266 editLinkButtons.setLayout(gridLayout1);
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267 gridLayout1.setRows(3);
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268 linkNameList.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));
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269 linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
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270 linkPanel2.setLayout(borderLayout3);
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271 linkURLList.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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272 linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);
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274 defaultBrowser.addMouseListener(new MouseAdapter()
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276 public void mouseClicked(MouseEvent e)
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278 if (e.getClickCount() > 1)
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280 defaultBrowser_mouseClicked(e);
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284 useProxy.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
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285 useProxy.setHorizontalAlignment(SwingConstants.RIGHT);
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286 useProxy.setHorizontalTextPosition(SwingConstants.LEADING);
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287 useProxy.setText("Use a proxy server");
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288 useProxy.addActionListener(new ActionListener()
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290 public void actionPerformed(ActionEvent e)
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292 useProxy_actionPerformed();
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295 jPanel1.setBorder(titledBorder1);
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296 jPanel1.setLayout(gridBagLayout1);
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297 visualTab.add(annotations);
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298 visualTab.add(conservation);
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299 visualTab.add(quality);
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300 visualTab.add(fullID);
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301 visualTab.add(gapSymbolCB);
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302 visualTab.add(fontLabel);
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303 visualTab.add(fontNameCB);
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304 visualTab.add(colourLabel);
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305 visualTab.add(gapLabel);
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306 visualTab.add(colour);
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307 visualTab.add(fontSizeCB);
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308 visualTab.add(fontStyleCB);
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309 visualTab.add(identity);
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310 visualTab.add(fullScreen);
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311 visualTab.add(startupCheckbox);
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312 visualTab.add(startupFileTextfield);
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314 tabbedPane.add(visualTab, "Visual");
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315 tabbedPane.add(connectTab, "Connections");
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317 linkPanel.add(editLinkButtons, BorderLayout.EAST);
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318 editLinkButtons.add(newLink, null);
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319 editLinkButtons.add(editLink, null);
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320 editLinkButtons.add(deleteLink, null);
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321 linkPanel.add(linkScrollPane, BorderLayout.CENTER);
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322 linkScrollPane.getViewport().add(linkPanel2, null);
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323 linkPanel2.add(linkURLList, BorderLayout.CENTER);
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324 linkPanel2.add(linkNameList, BorderLayout.WEST);
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325 okCancelPanel.add(ok);
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326 okCancelPanel.add(cancel);
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327 this.add(tabbedPane, java.awt.BorderLayout.CENTER);
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329 this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);
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330 jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0
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331 , GridBagConstraints.WEST, GridBagConstraints.NONE,
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332 new Insets(0, 2, 4, 0), 5, 0));
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333 jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0
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334 , GridBagConstraints.WEST,
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335 GridBagConstraints.NONE,
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336 new Insets(0, 0, 4, 0), 11, 6));
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337 connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0
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338 , GridBagConstraints.CENTER, GridBagConstraints.BOTH,
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339 new Insets(16, 0, 0, 12), 359, -17));
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340 connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0
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341 , GridBagConstraints.CENTER, GridBagConstraints.BOTH,
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342 new Insets(21, 0, 35, 12), 4, 6));
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343 connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0
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344 , GridBagConstraints.WEST, GridBagConstraints.NONE,
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345 new Insets(16, 0, 0, 0), 5, 1));
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346 jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0
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347 , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
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348 new Insets(0, 2, 4, 2), 54, 1));
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349 jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0
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350 , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
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351 new Insets(0, 2, 4, 0), 263, 1));
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352 connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0
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353 , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,
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354 new Insets(15, 0, 0, 15), 307, 1));
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355 jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0
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356 , GridBagConstraints.WEST,
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357 GridBagConstraints.NONE,
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358 new Insets(0, 2, 5, 185), 2,
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360 DefaultListCellRenderer dlcr = new DefaultListCellRenderer();
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361 dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);
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362 gapSymbolCB.setRenderer(dlcr);
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368 * @param e DOCUMENT ME!
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370 public void ok_actionPerformed(ActionEvent e)
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377 * @param e DOCUMENT ME!
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379 public void cancel_actionPerformed(ActionEvent e)
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386 * @param e DOCUMENT ME!
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388 public void annotations_actionPerformed(ActionEvent e)
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396 public void startupFileTextfield_mouseClicked()
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401 public void newLink_actionPerformed(ActionEvent e) {
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405 public void editLink_actionPerformed(ActionEvent e) {
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409 public void deleteLink_actionPerformed(ActionEvent e) {
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413 public void defaultBrowser_mouseClicked(MouseEvent e)
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418 public void linkURLList_keyTyped(KeyEvent e)
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423 public void useProxy_actionPerformed()
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425 proxyServerTB.setEnabled(useProxy.isSelected());
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426 proxyPortTB.setEnabled(useProxy.isSelected());
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