src/jalview/jbgui/GPreferences.java

   1 /*\r
   2 * Jalview - A Sequence Alignment Editor and Viewer\r
   3 * Copyright (C) 2005 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle\r
   4 *\r
   5 * This program is free software; you can redistribute it and/or\r
   6 * modify it under the terms of the GNU General Public License\r
   7 * as published by the Free Software Foundation; either version 2\r
   8 * of the License, or (at your option) any later version.\r
   9 *\r
  10 * This program is distributed in the hope that it will be useful,\r
  11 * but WITHOUT ANY WARRANTY; without even the implied warranty of\r
  12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the\r
  13 * GNU General Public License for more details.\r
  14 *\r
  15 * You should have received a copy of the GNU General Public License\r
  16 * along with this program; if not, write to the Free Software\r
  17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA\r
  18 */\r
  19 package jalview.jbgui;\r
  20 \r
  21 import java.awt.*;\r
  22 \r
  23 import javax.swing.*;\r
  24 import javax.swing.border.TitledBorder;\r
  25 import java.awt.event.*;\r
  26 import javax.swing.event.*;\r
  27 \r
  28 \r
  29 /**\r
  30  * DOCUMENT ME!\r
  31  *\r
  32  * @author $author$\r
  33  * @version $Revision$\r
  34  */\r
  35 public class GPreferences extends JPanel\r
  36 {\r
  37     JTabbedPane tabbedPane = new JTabbedPane();\r
  38 \r
  39     JButton ok = new JButton();\r
  40     JButton cancel = new JButton();\r
  41     JPanel okCancelPanel = new JPanel();\r
  42     BorderLayout borderLayout1 = new BorderLayout();\r
  43     protected JCheckBox quality = new JCheckBox();\r
  44     JPanel visualTab = new JPanel();\r
  45     protected JCheckBox dbRef = new JCheckBox();\r
  46     protected JCheckBox fullScreen = new JCheckBox();\r
  47     protected JCheckBox conservation = new JCheckBox();\r
  48     protected JCheckBox identity = new JCheckBox();\r
  49     protected JCheckBox annotations = new JCheckBox();\r
  50     JLabel gapLabel = new JLabel();\r
  51     protected JComboBox colour = new JComboBox();\r
  52     JLabel colourLabel = new JLabel();\r
  53     JLabel fontLabel = new JLabel();\r
  54     protected JComboBox fontSizeCB = new JComboBox();\r
  55     protected JComboBox fontStyleCB = new JComboBox();\r
  56     protected JComboBox fontNameCB = new JComboBox();\r
  57     protected JComboBox gapSymbolCB = new JComboBox();\r
  58     protected JCheckBox startupCheckbox = new JCheckBox();\r
  59     protected JTextField startupFileTextfield = new JTextField();\r
  60   JPanel connectTab = new JPanel();\r
  61   JLabel serverLabel = new JLabel();\r
  62   protected JList linkURLList = new JList();\r
  63   protected JTextField proxyServerTB = new JTextField();\r
  64   protected JTextField proxyPortTB = new JTextField();\r
  65   JLabel portLabel = new JLabel();\r
  66   JLabel browserLabel = new JLabel();\r
  67   protected JTextField defaultBrowser = new JTextField();\r
  68   JButton newLink = new JButton();\r
  69   JButton editLink = new JButton();\r
  70   JButton deleteLink = new JButton();\r
  71   JScrollPane linkScrollPane = new JScrollPane();\r
  72   JPanel linkPanel = new JPanel();\r
  73   BorderLayout borderLayout2 = new BorderLayout();\r
  74   JPanel editLinkButtons = new JPanel();\r
  75   GridLayout gridLayout1 = new GridLayout();\r
  76   protected JList linkNameList = new JList();\r
  77   JPanel linkPanel2 = new JPanel();\r
  78   BorderLayout borderLayout3 = new BorderLayout();\r
  79   protected JCheckBox useProxy = new JCheckBox();\r
  80   JPanel jPanel1 = new JPanel();\r
  81   TitledBorder titledBorder1 = new TitledBorder("Proxy Server");\r
  82   TitledBorder titledBorder2 = new TitledBorder("File Output");\r
  83   GridBagLayout gridBagLayout2 = new GridBagLayout();\r
  84   GridBagLayout gridBagLayout1 = new GridBagLayout();\r
  85   GridBagLayout gridBagLayout3 = new GridBagLayout();\r
  86   protected JComboBox sortby = new JComboBox();\r
  87   JLabel sortLabel = new JLabel();\r
  88   JPanel jPanel2 = new JPanel();\r
  89   GridLayout gridLayout2 = new GridLayout();\r
  90   JPanel jPanel3 = new JPanel();\r
  91   JPanel exportTab = new JPanel();\r
  92   JLabel epsLabel = new JLabel();\r
  93   protected JComboBox epsRendering = new JComboBox();\r
  94   JLabel jLabel1 = new JLabel();\r
  95   JLabel jLabel2 = new JLabel();\r
  96   protected JCheckBox pileupdb = new JCheckBox();\r
  97   protected  JCheckBox fastadb = new JCheckBox();\r
  98   protected  JCheckBox blcjv = new JCheckBox();\r
  99   protected  JCheckBox pileupjv = new JCheckBox();\r
 100   protected  JCheckBox msfdb = new JCheckBox();\r
 101   protected  JCheckBox pfamdb = new JCheckBox();\r
 102   protected  JCheckBox clustaljv = new JCheckBox();\r
 103   protected  JCheckBox msfjv = new JCheckBox();\r
 104   protected  JCheckBox blcdb = new JCheckBox();\r
 105   protected  JCheckBox clustaldb = new JCheckBox();\r
 106   protected  JCheckBox fastajv = new JCheckBox();\r
 107   protected  JCheckBox pfamjv = new JCheckBox();\r
 108   JLabel jLabel10 = new JLabel();\r
 109   JLabel jLabel11 = new JLabel();\r
 110   FlowLayout flowLayout1 = new FlowLayout();\r
 111   protected  JCheckBox pirdb = new JCheckBox();\r
 112   protected  JCheckBox pirjv = new JCheckBox();\r
 113   JPanel jPanel11 = new JPanel();\r
 114   GridLayout gridLayout3 = new GridLayout();\r
 115   Font verdana11 = new java.awt.Font("Verdana", Font.PLAIN, 11);\r
 116   protected JCheckBox seqLimit = new JCheckBox();\r
 117   /**\r
 118      * Creates a new GPreferences object.\r
 119      */\r
 120     public GPreferences()\r
 121     {\r
 122         try\r
 123         {\r
 124             jbInit();\r
 125         }\r
 126         catch (Exception ex)\r
 127         {\r
 128             ex.printStackTrace();\r
 129         }\r
 130     }\r
 131 \r
 132     /**\r
 133      * DOCUMENT ME!\r
 134      *\r
 135      * @throws Exception DOCUMENT ME!\r
 136      */\r
 137     private void jbInit() throws Exception\r
 138     {\r
 139         this.setLayout(borderLayout1);\r
 140         ok.setText("OK");\r
 141         ok.addActionListener(new ActionListener()\r
 142             {\r
 143                 public void actionPerformed(ActionEvent e)\r
 144                 {\r
 145                     ok_actionPerformed(e);\r
 146                 }\r
 147             });\r
 148         cancel.setText("Cancel");\r
 149         cancel.addActionListener(new ActionListener()\r
 150             {\r
 151                 public void actionPerformed(ActionEvent e)\r
 152                 {\r
 153                     cancel_actionPerformed(e);\r
 154                 }\r
 155             });\r
 156         quality.setEnabled(false);\r
 157         quality.setFont(verdana11);\r
 158         quality.setHorizontalAlignment(SwingConstants.RIGHT);\r
 159         quality.setHorizontalTextPosition(SwingConstants.LEFT);\r
 160         quality.setSelected(true);\r
 161         quality.setText("Quality");\r
 162     visualTab.setBorder(new TitledBorder("Open new alignment"));\r
 163     visualTab.setLayout(null);\r
 164     dbRef.setFont(verdana11);\r
 165     dbRef.setHorizontalAlignment(SwingConstants.RIGHT);\r
 166     dbRef.setHorizontalTextPosition(SwingConstants.LEFT);\r
 167     dbRef.setMargin(new Insets(4, 2, 2, 0));\r
 168     dbRef.setText("DB prefix (DB|AccNo)");\r
 169     fullScreen.setFont(verdana11);\r
 170         fullScreen.setHorizontalAlignment(SwingConstants.RIGHT);\r
 171         fullScreen.setHorizontalTextPosition(SwingConstants.LEFT);\r
 172     fullScreen.setMargin(new Insets(2, 2, 2, 0));\r
 173     fullScreen.setText("Maximise Window");\r
 174     conservation.setEnabled(false);\r
 175         conservation.setFont(verdana11);\r
 176         conservation.setHorizontalAlignment(SwingConstants.RIGHT);\r
 177         conservation.setHorizontalTextPosition(SwingConstants.LEFT);\r
 178         conservation.setSelected(true);\r
 179         conservation.setText("Conservation");\r
 180     identity.setEnabled(false);\r
 181         identity.setFont(verdana11);\r
 182         identity.setHorizontalAlignment(SwingConstants.RIGHT);\r
 183         identity.setHorizontalTextPosition(SwingConstants.LEFT);\r
 184         identity.setSelected(true);\r
 185         identity.setText("Consensus");\r
 186     annotations.setFont(verdana11);\r
 187         annotations.setHorizontalAlignment(SwingConstants.RIGHT);\r
 188         annotations.setHorizontalTextPosition(SwingConstants.LEFT);\r
 189     annotations.setMargin(new Insets(2, 4, 2, 0));\r
 190     annotations.setSelected(true);\r
 191         annotations.setText("Show Annotations");\r
 192     annotations.addActionListener(new ActionListener()\r
 193             {\r
 194                 public void actionPerformed(ActionEvent e)\r
 195                 {\r
 196                     annotations_actionPerformed(e);\r
 197                 }\r
 198             });\r
 199         gapLabel.setFont(verdana11);\r
 200         gapLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 201         gapLabel.setText("Gap Symbol ");\r
 202     colour.setFont(verdana11);\r
 203         colour.setBounds(new Rectangle(170, 170, 155, 21));\r
 204         colourLabel.setFont(verdana11);\r
 205         colourLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 206         colourLabel.setText("Colour ");\r
 207     fontLabel.setFont(verdana11);\r
 208         fontLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 209         fontLabel.setText("Font ");\r
 210     fontSizeCB.setFont(verdana11);\r
 211         fontSizeCB.setBounds(new Rectangle(317, 111, 49, 21));\r
 212         fontStyleCB.setFont(verdana11);\r
 213         fontStyleCB.setBounds(new Rectangle(365, 111, 70, 21));\r
 214         fontNameCB.setFont(verdana11);\r
 215         fontNameCB.setBounds(new Rectangle(170, 111, 147, 21));\r
 216         gapSymbolCB.setFont(verdana11);\r
 217         gapSymbolCB.setBounds(new Rectangle(170, 141, 69, 21));\r
 218         startupCheckbox.setText("Open file");\r
 219     startupCheckbox.setFont(verdana11);\r
 220         startupCheckbox.setHorizontalAlignment(SwingConstants.RIGHT);\r
 221         startupCheckbox.setHorizontalTextPosition(SwingConstants.LEFT);\r
 222         startupCheckbox.setSelected(true);\r
 223         startupFileTextfield.setFont(verdana11);\r
 224         startupFileTextfield.setBounds(new Rectangle(170, 232, 271, 20));\r
 225         startupFileTextfield.addMouseListener(new MouseAdapter()\r
 226             {\r
 227                 public void mouseClicked(MouseEvent e)\r
 228                 {\r
 229                     if (e.getClickCount() > 1)\r
 230                     {\r
 231                         startupFileTextfield_mouseClicked();\r
 232                     }\r
 233                 }\r
 234             });\r
 235 \r
 236      connectTab.setLayout(gridBagLayout3);\r
 237     serverLabel.setText("Address");\r
 238     serverLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 239     serverLabel.setFont(verdana11);\r
 240     proxyServerTB.setFont(verdana11);\r
 241     proxyPortTB.setFont(verdana11);\r
 242     portLabel.setFont(verdana11);\r
 243     portLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 244     portLabel.setText("Port");\r
 245     browserLabel.setFont(new java.awt.Font("SansSerif", 0, 11));\r
 246     browserLabel.setHorizontalAlignment(SwingConstants.TRAILING);\r
 247     browserLabel.setText("Default Browser (Unix)");\r
 248     defaultBrowser.setFont(verdana11);\r
 249     defaultBrowser.setText("");\r
 250     newLink.setText("New");\r
 251     newLink.addActionListener(new java.awt.event.ActionListener() {\r
 252       public void actionPerformed(ActionEvent e) {\r
 253         newLink_actionPerformed(e);\r
 254       }\r
 255     });\r
 256     editLink.setText("Edit");\r
 257     editLink.addActionListener(new java.awt.event.ActionListener() {\r
 258       public void actionPerformed(ActionEvent e) {\r
 259         editLink_actionPerformed(e);\r
 260       }\r
 261     });\r
 262     deleteLink.setText("Delete");\r
 263     deleteLink.addActionListener(new java.awt.event.ActionListener() {\r
 264       public void actionPerformed(ActionEvent e) {\r
 265         deleteLink_actionPerformed(e);\r
 266       }\r
 267     });\r
 268 \r
 269     linkURLList.addListSelectionListener(new ListSelectionListener()\r
 270          {\r
 271             public void valueChanged(ListSelectionEvent e)\r
 272             {\r
 273                int index = linkURLList.getSelectedIndex();\r
 274                linkNameList.setSelectedIndex(index);\r
 275             }\r
 276          });\r
 277 \r
 278     linkNameList.addListSelectionListener(new ListSelectionListener()\r
 279         {\r
 280           public void valueChanged(ListSelectionEvent e)\r
 281           {\r
 282               int index = linkNameList.getSelectedIndex();\r
 283               linkURLList.setSelectedIndex(index);\r
 284           }\r
 285         });\r
 286 \r
 287     linkScrollPane.setBorder(null);\r
 288     linkPanel.setBorder(new TitledBorder("URL link from Sequence ID"));\r
 289     linkPanel.setLayout(borderLayout2);\r
 290     editLinkButtons.setLayout(gridLayout1);\r
 291     gridLayout1.setRows(3);\r
 292     linkNameList.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));\r
 293     linkNameList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
 294     linkPanel2.setLayout(borderLayout3);\r
 295     linkURLList.setFont(verdana11);\r
 296     linkURLList.setSelectionMode(ListSelectionModel.SINGLE_SELECTION);\r
 297 \r
 298     defaultBrowser.addMouseListener(new MouseAdapter()\r
 299     {\r
 300       public void mouseClicked(MouseEvent e)\r
 301       {\r
 302         if (e.getClickCount() > 1)\r
 303             {\r
 304               defaultBrowser_mouseClicked(e);\r
 305             }\r
 306       }\r
 307     });\r
 308     useProxy.setFont(verdana11);\r
 309     useProxy.setHorizontalAlignment(SwingConstants.RIGHT);\r
 310     useProxy.setHorizontalTextPosition(SwingConstants.LEADING);\r
 311     useProxy.setText("Use a proxy server");\r
 312     useProxy.addActionListener(new ActionListener()\r
 313     {\r
 314       public void actionPerformed(ActionEvent e)\r
 315       {\r
 316         useProxy_actionPerformed();\r
 317       }\r
 318     });\r
 319     jPanel1.setBorder(titledBorder1);\r
 320     jPanel1.setLayout(gridBagLayout1);\r
 321     sortby.setFont(verdana11);\r
 322     sortby.setBounds(new Rectangle(170, 200, 155, 21));\r
 323     sortLabel.setFont(verdana11);\r
 324     sortLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 325     sortLabel.setText("Sort by ");\r
 326     jPanel2.setBounds(new Rectangle(7, 17, 158, 242));\r
 327     jPanel2.setLayout(gridLayout2);\r
 328     gridLayout2.setRows(8);\r
 329     jPanel3.setBounds(new Rectangle(168, 47, 274, 26));\r
 330     exportTab.setLayout(null);\r
 331     epsLabel.setFont(verdana11);\r
 332     epsLabel.setHorizontalAlignment(SwingConstants.RIGHT);\r
 333     epsLabel.setText("EPS Rendering Style");\r
 334     epsLabel.setBounds(new Rectangle(9, 31, 140, 24));\r
 335     epsRendering.setFont(verdana11);\r
 336     epsRendering.setBounds(new Rectangle(154, 34, 187, 21));\r
 337     jLabel1.setFont(verdana11);\r
 338     jLabel1.setHorizontalAlignment(SwingConstants.CENTER);\r
 339     jLabel1.setText("/start-end suffix");\r
 340     jLabel2.setFont(verdana11);\r
 341     jLabel2.setHorizontalAlignment(SwingConstants.RIGHT);\r
 342     jLabel2.setHorizontalTextPosition(SwingConstants.RIGHT);\r
 343     jLabel2.setText("Database ref prefix");\r
 344     jLabel1.setFont(verdana11);\r
 345     jLabel2.setFont(verdana11);\r
 346     fastajv.setFont(verdana11);\r
 347     fastajv.setHorizontalAlignment(SwingConstants.CENTER);\r
 348     jLabel10.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));\r
 349     jLabel10.setHorizontalAlignment(SwingConstants.RIGHT);\r
 350     jLabel10.setText("(Uniprot|P02055)");\r
 351     jLabel11.setFont(new java.awt.Font("Verdana", Font.ITALIC, 11));\r
 352     jLabel11.setHorizontalAlignment(SwingConstants.CENTER);\r
 353     jLabel11.setText("(/15-380)");\r
 354     clustaldb.setFont(verdana11);\r
 355     clustaldb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 356     clustaldb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 357     clustaldb.setText("Clustal     ");\r
 358     blcdb.setFont(verdana11);\r
 359     blcdb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 360     blcdb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 361     blcdb.setText("BLC     ");\r
 362     fastadb.setFont(verdana11);\r
 363     fastadb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 364     fastadb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 365     fastadb.setText("Fasta     ");\r
 366     msfdb.setFont(verdana11);\r
 367     msfdb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 368     msfdb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 369     msfdb.setText("MSF     ");\r
 370     pfamdb.setFont(verdana11);\r
 371     pfamdb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 372     pfamdb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 373     pfamdb.setText("PFAM     ");\r
 374     pileupdb.setFont(verdana11);\r
 375     pileupdb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 376     pileupdb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 377     pileupdb.setText("Pileup     ");\r
 378     msfjv.setFont(verdana11);\r
 379     msfjv.setHorizontalAlignment(SwingConstants.CENTER);\r
 380     pirdb.setFont(verdana11);\r
 381     pirdb.setHorizontalAlignment(SwingConstants.RIGHT);\r
 382     pirdb.setHorizontalTextPosition(SwingConstants.LEFT);\r
 383     pirdb.setText("PIR     ");\r
 384     jPanel11.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
 385     jPanel11.setBorder(titledBorder2);\r
 386     jPanel11.setBounds(new Rectangle(18, 72, 325, 182));\r
 387     jPanel11.setLayout(gridLayout3);\r
 388     gridLayout3.setColumns(2);\r
 389     gridLayout3.setRows(9);\r
 390     blcjv.setFont(verdana11);\r
 391     blcjv.setHorizontalAlignment(SwingConstants.CENTER);\r
 392     clustaljv.setFont(verdana11);\r
 393     clustaljv.setHorizontalAlignment(SwingConstants.CENTER);\r
 394     pfamjv.setFont(verdana11);\r
 395     pfamjv.setHorizontalAlignment(SwingConstants.CENTER);\r
 396     pileupjv.setFont(verdana11);\r
 397     pileupjv.setHorizontalAlignment(SwingConstants.CENTER);\r
 398     pirjv.setFont(verdana11);\r
 399     pirjv.setHorizontalAlignment(SwingConstants.CENTER);\r
 400     seqLimit.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));\r
 401     seqLimit.setHorizontalTextPosition(SwingConstants.LEADING);\r
 402     seqLimit.setText("Sequence Limits (/1-350)");\r
 403     seqLimit.setBounds(new Rectangle(172, 82, 195, 23));\r
 404     jPanel2.add(fullScreen);\r
 405     jPanel2.add(annotations);\r
 406     jPanel2.add(dbRef);\r
 407     jPanel2.add(fontLabel);\r
 408     jPanel2.add(gapLabel);\r
 409     jPanel2.add(colourLabel);\r
 410     jPanel2.add(sortLabel);\r
 411     jPanel2.add(startupCheckbox);\r
 412     visualTab.add(gapSymbolCB);\r
 413     visualTab.add(colour);\r
 414     visualTab.add(seqLimit);\r
 415     visualTab.add(jPanel3);\r
 416     jPanel3.add(conservation);\r
 417     jPanel3.add(identity);\r
 418     jPanel3.add(quality);\r
 419     visualTab.add(sortby);\r
 420     visualTab.add(startupFileTextfield);\r
 421     visualTab.add(fontNameCB);\r
 422     visualTab.add(fontSizeCB);\r
 423     visualTab.add(fontStyleCB);\r
 424     visualTab.add(jPanel2);\r
 425     linkPanel.add(editLinkButtons, BorderLayout.EAST);\r
 426     editLinkButtons.add(newLink, null);\r
 427     editLinkButtons.add(editLink, null);\r
 428     editLinkButtons.add(deleteLink, null);\r
 429     linkPanel.add(linkScrollPane, BorderLayout.CENTER);\r
 430     linkScrollPane.getViewport().add(linkPanel2, null);\r
 431     linkPanel2.add(linkURLList, BorderLayout.CENTER);\r
 432     linkPanel2.add(linkNameList, BorderLayout.WEST);\r
 433         okCancelPanel.add(ok);\r
 434         okCancelPanel.add(cancel);\r
 435     this.add(tabbedPane, java.awt.BorderLayout.CENTER);\r
 436 \r
 437         this.add(okCancelPanel, java.awt.BorderLayout.SOUTH);\r
 438     jPanel1.add(serverLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
 439         , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
 440         new Insets(0, 2, 4, 0), 5, 0));\r
 441     jPanel1.add(portLabel, new GridBagConstraints(2, 1, 1, 1, 0.0, 0.0\r
 442                                                   , GridBagConstraints.WEST,\r
 443                                                   GridBagConstraints.NONE,\r
 444                                                   new Insets(0, 0, 4, 0), 11, 6));\r
 445     connectTab.add(linkPanel, new GridBagConstraints(0, 0, 2, 1, 1.0, 1.0\r
 446         , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
 447         new Insets(16, 0, 0, 12), 359, -17));\r
 448     connectTab.add(jPanel1, new GridBagConstraints(0, 2, 2, 1, 1.0, 1.0\r
 449         , GridBagConstraints.CENTER, GridBagConstraints.BOTH,\r
 450         new Insets(21, 0, 35, 12), 4, 6));\r
 451     connectTab.add(browserLabel, new GridBagConstraints(0, 1, 1, 1, 0.0, 0.0\r
 452         , GridBagConstraints.WEST, GridBagConstraints.NONE,\r
 453         new Insets(16, 0, 0, 0), 5, 1));\r
 454     jPanel1.add(proxyPortTB, new GridBagConstraints(3, 1, 1, 1, 1.0, 0.0\r
 455         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 456         new Insets(0, 2, 4, 2), 54, 1));\r
 457     jPanel1.add(proxyServerTB, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
 458         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 459         new Insets(0, 2, 4, 0), 263, 1));\r
 460     connectTab.add(defaultBrowser, new GridBagConstraints(1, 1, 1, 1, 1.0, 0.0\r
 461         , GridBagConstraints.WEST, GridBagConstraints.HORIZONTAL,\r
 462         new Insets(15, 0, 0, 15), 307, 1));\r
 463 \r
 464 \r
 465     jPanel1.add(useProxy, new GridBagConstraints(0, 0, 2, 1, 0.0, 0.0\r
 466                                                  , GridBagConstraints.WEST,\r
 467                                                  GridBagConstraints.NONE,\r
 468                                                  new Insets(0, 2, 5, 185), 2,\r
 469                                                  -4));\r
 470     DefaultListCellRenderer dlcr = new DefaultListCellRenderer();\r
 471         dlcr.setHorizontalAlignment(DefaultListCellRenderer.CENTER);\r
 472         gapSymbolCB.setRenderer(dlcr);\r
 473 \r
 474     tabbedPane.add(visualTab, "Visual");\r
 475     tabbedPane.add(connectTab,"Connections");\r
 476     tabbedPane.add(exportTab, "Output");\r
 477     jPanel11.add(jLabel2);\r
 478     jPanel11.add(jLabel1);\r
 479     jPanel11.add(jLabel10);\r
 480     jPanel11.add(jLabel11);\r
 481     jPanel11.add(blcdb);\r
 482     jPanel11.add(blcjv);\r
 483     jPanel11.add(clustaldb);\r
 484     jPanel11.add(clustaljv);\r
 485     jPanel11.add(fastadb);\r
 486     jPanel11.add(fastajv);\r
 487     jPanel11.add(msfdb);\r
 488     jPanel11.add(msfjv);\r
 489     jPanel11.add(pfamdb);\r
 490     jPanel11.add(pfamjv);\r
 491     jPanel11.add(pileupdb);\r
 492     jPanel11.add(pileupjv);\r
 493     jPanel11.add(pirdb);\r
 494     jPanel11.add(pirjv);\r
 495     exportTab.add(epsLabel);\r
 496     exportTab.add(epsRendering);\r
 497     exportTab.add(jPanel11);\r
 498   }\r
 499 \r
 500     /**\r
 501      * DOCUMENT ME!\r
 502      *\r
 503      * @param e DOCUMENT ME!\r
 504      */\r
 505     public void ok_actionPerformed(ActionEvent e)\r
 506     {\r
 507     }\r
 508 \r
 509     /**\r
 510      * DOCUMENT ME!\r
 511      *\r
 512      * @param e DOCUMENT ME!\r
 513      */\r
 514     public void cancel_actionPerformed(ActionEvent e)\r
 515     {\r
 516     }\r
 517 \r
 518     /**\r
 519      * DOCUMENT ME!\r
 520      *\r
 521      * @param e DOCUMENT ME!\r
 522      */\r
 523     public void annotations_actionPerformed(ActionEvent e)\r
 524     {\r
 525     }\r
 526 \r
 527 \r
 528     /**\r
 529      * DOCUMENT ME!\r
 530      */\r
 531     public void startupFileTextfield_mouseClicked()\r
 532     {\r
 533     }\r
 534 \r
 535 \r
 536   public void newLink_actionPerformed(ActionEvent e) {\r
 537 \r
 538   }\r
 539 \r
 540   public void editLink_actionPerformed(ActionEvent e) {\r
 541 \r
 542   }\r
 543 \r
 544   public void deleteLink_actionPerformed(ActionEvent e) {\r
 545 \r
 546   }\r
 547 \r
 548   public void defaultBrowser_mouseClicked(MouseEvent e)\r
 549   {\r
 550 \r
 551   }\r
 552 \r
 553   public void linkURLList_keyTyped(KeyEvent e)\r
 554   {\r
 555 \r
 556   }\r
 557 \r
 558   public void useProxy_actionPerformed()\r
 559   {\r
 560       proxyServerTB.setEnabled(useProxy.isSelected());\r
 561       proxyPortTB.setEnabled(useProxy.isSelected());\r
 562   }\r
 563 }\r