2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
22 package jalview.jbgui;
24 import java.awt.BorderLayout;
25 import java.awt.CardLayout;
26 import java.awt.Component;
27 import java.awt.Dimension;
28 import java.awt.FlowLayout;
30 import java.awt.GridBagConstraints;
31 import java.awt.GridBagLayout;
32 import java.awt.GridLayout;
33 import java.awt.Insets;
34 import java.awt.Point;
35 import java.awt.event.ActionEvent;
36 import java.awt.event.ActionListener;
37 import java.awt.event.ItemEvent;
38 import java.awt.event.ItemListener;
39 import java.awt.event.KeyAdapter;
40 import java.awt.event.KeyEvent;
41 import java.awt.event.MouseAdapter;
42 import java.awt.event.MouseEvent;
43 import java.util.Arrays;
44 import java.util.HashMap;
47 import javax.swing.ImageIcon;
48 import javax.swing.JButton;
49 import javax.swing.JCheckBox;
50 import javax.swing.JComboBox;
51 import javax.swing.JFrame;
52 import javax.swing.JInternalFrame;
53 import javax.swing.JLabel;
54 import javax.swing.JList;
55 import javax.swing.JPanel;
56 import javax.swing.JScrollPane;
57 import javax.swing.JSeparator;
58 import javax.swing.JTabbedPane;
59 import javax.swing.JTable;
60 import javax.swing.JTextField;
61 import javax.swing.ListCellRenderer;
62 import javax.swing.SwingConstants;
63 import javax.swing.Timer;
64 import javax.swing.event.ChangeEvent;
65 import javax.swing.event.ChangeListener;
66 import javax.swing.event.DocumentEvent;
67 import javax.swing.event.DocumentListener;
68 import javax.swing.event.InternalFrameEvent;
69 import javax.swing.table.TableColumn;
71 import jalview.datamodel.SequenceI;
72 import jalview.fts.api.FTSDataColumnI;
73 import jalview.fts.core.FTSDataColumnPreferences;
74 import jalview.gui.AlignmentPanel;
75 import jalview.gui.Desktop;
76 import jalview.gui.JvSwingUtils;
77 import jalview.gui.StructureViewer;
78 import jalview.structure.StructureImportSettings;
79 import jalview.structure.StructureImportSettings.TFType;
80 import jalview.util.MessageManager;
81 import jalview.util.Platform;
82 import net.miginfocom.swing.MigLayout;
84 @SuppressWarnings("serial")
86 * GUI layout for structure chooser
91 public abstract class GStructureChooser extends JPanel
92 implements ItemListener
94 private static final Font VERDANA_12 = new Font("Verdana", 0, 12);
96 public static final String VIEWS_FILTER = "VIEWS_FILTER";
98 protected static final String VIEWS_FROM_FILE = "VIEWS_FROM_FILE";
100 protected static final String VIEWS_ENTER_ID = "VIEWS_ENTER_ID";
103 * 'cached' structure view
105 protected static final String VIEWS_LOCAL_PDB = "VIEWS_LOCAL_PDB";
107 protected JPanel statusPanel = new JPanel();
109 public JLabel statusBar = new JLabel();
111 protected String frameTitle = MessageManager
112 .getString("label.structure_chooser");
114 protected JInternalFrame mainFrame = new JInternalFrame(frameTitle);
116 protected JComboBox<FilterOption> cmb_filterOption = new JComboBox<>();
118 protected AlignmentPanel ap;
120 protected StringBuilder errorWarning = new StringBuilder();
122 protected JButton btn_add;
124 protected JButton btn_newView;
126 protected JButton btn_pdbFromFile = new JButton();
128 protected JLabel lbl_chooseTempFacType = new JLabel();
130 protected JComboBox<StructureImportSettings.TFType> combo_tempFacAs = new JComboBox<>();
132 protected JButton btn_paeMatrixFile = new JButton();
134 // holder for icon and button
135 protected JPanel pnl_queryTDB;
137 protected JButton btn_queryTDB = new JButton();
139 protected JCheckBox chk_superpose = new JCheckBox(
140 MessageManager.getString("label.superpose_structures"));
142 protected JTextField txt_search = new JTextField(14);
144 protected JPanel pnl_switchableViews = new JPanel(new CardLayout());
146 protected CardLayout layout_switchableViews = (CardLayout) (pnl_switchableViews
149 protected JCheckBox chk_invertFilter = new JCheckBox(
150 MessageManager.getString("label.invert"));
152 protected ImageIcon loadingImage = new ImageIcon(
153 getClass().getResource("/images/loading.gif"));
155 protected ImageIcon goodImage = new ImageIcon(
156 getClass().getResource("/images/good.png"));
158 protected ImageIcon errorImage = new ImageIcon(
159 getClass().getResource("/images/error.png"));
161 protected ImageIcon warningImage = new ImageIcon(
162 getClass().getResource("/images/warning.gif"));
164 protected ImageIcon tdbImage = new ImageIcon(getClass()
165 .getResource("/images/3d-beacons-logo-transparent.png"));
167 protected JLabel lbl_loading = new JLabel(loadingImage);
169 protected JLabel lbl_pdbManualFetchStatus = new JLabel(errorImage);
171 protected JLabel lbl_fromFileStatus = new JLabel(errorImage);
173 protected AssociateSeqPanel idInputAssSeqPanel = new AssociateSeqPanel();
175 protected AssociateSeqPanel fileChooserAssSeqPanel = new AssociateSeqPanel();
177 protected JComboBox<StructureViewer> targetView = new JComboBox<>();
179 protected JTable tbl_local_pdb = new JTable();
181 protected JTabbedPane pnl_filter = new JTabbedPane();
183 protected abstract FTSDataColumnPreferences getFTSDocFieldPrefs();
185 protected abstract void setFTSDocFieldPrefs(
186 FTSDataColumnPreferences newPrefs);
188 protected FTSDataColumnI[] previousWantedFields;
190 protected static Map<String, Integer> tempUserPrefs = new HashMap<>();
192 private JTable tbl_summary = new JTable()
194 private boolean inLayout;
197 public boolean getScrollableTracksViewportWidth()
199 return hasExcessWidth();
204 public void doLayout()
206 if (hasExcessWidth())
208 autoResizeMode = AUTO_RESIZE_SUBSEQUENT_COLUMNS;
213 autoResizeMode = AUTO_RESIZE_OFF;
216 protected boolean hasExcessWidth()
218 return getPreferredSize().width < getParent().getWidth();
222 public void columnMarginChanged(ChangeEvent e)
228 TableColumn resizingColumn = getTableHeader().getResizingColumn();
229 // Need to do this here, before the parent's
230 // layout manager calls getPreferredSize().
231 if (resizingColumn != null && autoResizeMode == AUTO_RESIZE_OFF
234 resizingColumn.setPreferredWidth(resizingColumn.getWidth());
235 String colHeader = resizingColumn.getHeaderValue().toString();
236 tempUserPrefs.put(colHeader, resizingColumn.getWidth());
242 public String getToolTipText(MouseEvent evt)
244 String toolTipText = null;
245 java.awt.Point pnt = evt.getPoint();
246 int rowIndex = rowAtPoint(pnt);
247 int colIndex = columnAtPoint(pnt);
251 if (getValueAt(rowIndex, colIndex) == null)
255 toolTipText = getValueAt(rowIndex, colIndex).toString();
256 } catch (Exception e)
258 // e.printStackTrace();
260 toolTipText = (toolTipText == null ? null
261 : (toolTipText.length() > 500
262 ? JvSwingUtils.wrapTooltip(true,
263 "\"" + toolTipText.subSequence(0, 500)
265 : JvSwingUtils.wrapTooltip(true, toolTipText)));
270 public GStructureChooser()
274 protected void initDialog()
280 mainFrame.setFrameIcon(null);
281 mainFrame.setVisible(false);
282 mainFrame.invalidate();
284 } catch (Exception e)
286 System.out.println(e); // for JavaScript TypeError
291 // BH SwingJS optimization
292 // (a) 100-ms interruptable timer for text entry -- BH 1/10/2019
293 // (b) two-character minimum, at least for JavaScript.
297 protected void txt_search_ActionPerformedDelayed()
303 timer = new Timer(300, new ActionListener()
307 public void actionPerformed(ActionEvent e)
309 txt_search_ActionPerformed();
312 timer.setRepeats(false);
318 * Initializes the GUI default properties
322 private void jbInit() throws Exception
324 Integer width = tempUserPrefs.get("structureChooser.width") == null
326 : tempUserPrefs.get("structureChooser.width");
327 Integer height = tempUserPrefs.get("structureChooser.height") == null
329 : tempUserPrefs.get("structureChooser.height");
330 tbl_summary.setAutoCreateRowSorter(true);
331 tbl_summary.getTableHeader().setReorderingAllowed(false);
332 tbl_summary.addMouseListener(new MouseAdapter()
335 public void mousePressed(MouseEvent e)
339 super.mousePressed(e);
344 public void mouseClicked(MouseEvent e)
348 validateSelections();
353 public void mouseReleased(MouseEvent e)
357 validateSelections();
361 boolean popupAction(MouseEvent e)
363 if (e.isPopupTrigger())
365 Point pt = e.getPoint();
366 int selectedRow = tbl_summary.rowAtPoint(pt);
367 if (showPopupFor(selectedRow, pt.x, pt.y))
375 tbl_summary.addKeyListener(new KeyAdapter()
378 public void keyPressed(KeyEvent evt)
380 validateSelections();
381 switch (evt.getKeyCode())
383 case KeyEvent.VK_ESCAPE: // escape key
386 case KeyEvent.VK_ENTER: // enter key
387 if (btn_add.isEnabled())
389 add_ActionPerformed();
392 case KeyEvent.VK_TAB: // tab key
393 if (evt.isShiftDown())
395 pnl_filter.requestFocus();
399 btn_add.requestFocus();
409 JButton btn_cancel = new JButton(
410 MessageManager.getString("action.cancel"));
411 btn_cancel.setFont(VERDANA_12);
412 btn_cancel.addActionListener(new java.awt.event.ActionListener()
415 public void actionPerformed(ActionEvent e)
417 closeAction(pnl_filter.getHeight());
420 btn_cancel.addKeyListener(new KeyAdapter()
423 public void keyPressed(KeyEvent evt)
425 if (evt.getKeyCode() == KeyEvent.VK_ENTER)
427 closeAction(pnl_filter.getHeight());
432 tbl_local_pdb.setAutoCreateRowSorter(true);
433 tbl_local_pdb.getTableHeader().setReorderingAllowed(false);
434 tbl_local_pdb.addMouseListener(new MouseAdapter()
437 public void mouseClicked(MouseEvent e)
439 validateSelections();
443 public void mouseReleased(MouseEvent e)
445 validateSelections();
448 tbl_local_pdb.addKeyListener(new KeyAdapter()
451 public void keyPressed(KeyEvent evt)
453 validateSelections();
454 switch (evt.getKeyCode())
456 case KeyEvent.VK_ESCAPE: // escape key
459 case KeyEvent.VK_ENTER: // enter key
460 if (btn_add.isEnabled())
462 add_ActionPerformed();
465 case KeyEvent.VK_TAB: // tab key
466 if (evt.isShiftDown())
468 cmb_filterOption.requestFocus();
472 if (btn_add.isEnabled())
474 btn_add.requestFocus();
478 btn_cancel.requestFocus();
489 btn_newView = new JButton(
490 MessageManager.formatMessage("action.new_structure_view_with",
491 StructureViewer.getViewerType().toString()));
492 btn_newView.setFont(VERDANA_12);
493 btn_newView.addActionListener(new java.awt.event.ActionListener()
496 public void actionPerformed(ActionEvent e)
498 newView_ActionPerformed();
501 btn_newView.addKeyListener(new KeyAdapter()
504 public void keyPressed(KeyEvent evt)
506 if (evt.getKeyCode() == KeyEvent.VK_ENTER)
508 newView_ActionPerformed();
513 // TODO: JAL-3898 - get list of available external programs to view
516 btn_add = new JButton(MessageManager.getString("action.add"));
517 btn_add.setFont(VERDANA_12);
518 btn_add.addActionListener(new java.awt.event.ActionListener()
521 public void actionPerformed(ActionEvent e)
523 add_ActionPerformed();
526 btn_add.addKeyListener(new KeyAdapter()
529 public void keyPressed(KeyEvent evt)
531 if (evt.getKeyCode() == KeyEvent.VK_ENTER)
533 add_ActionPerformed();
538 btn_pdbFromFile.setFont(VERDANA_12);
539 String btn_title = MessageManager.getString("label.select_pdb_file");
540 btn_pdbFromFile.setText(btn_title + " ");
541 btn_pdbFromFile.addActionListener(new java.awt.event.ActionListener()
544 public void actionPerformed(ActionEvent e)
546 pdbFromFile_actionPerformed();
549 btn_pdbFromFile.addKeyListener(new KeyAdapter()
552 public void keyPressed(KeyEvent evt)
554 if (evt.getKeyCode() == KeyEvent.VK_ENTER)
556 pdbFromFile_actionPerformed();
561 lbl_chooseTempFacType.setText(new StringBuilder()
562 .append(MessageManager.getString("label.choose_tempfac_type"))
563 .append(" ").append(MessageManager.getString("label.optional"))
566 for (TFType t : TFType.values())
568 combo_tempFacAs.addItem(t);
570 // add changelistener
572 btn_paeMatrixFile.setText(new StringBuilder()
573 .append(MessageManager.getString("label.add_pae_matrix_file"))
574 .append(" ").append(MessageManager.getString("label.optional"))
577 // add actionlistener
579 JScrollPane scrl_foundStructures = new JScrollPane(tbl_summary);
580 scrl_foundStructures.setPreferredSize(new Dimension(width, height));
582 JScrollPane scrl_localPDB = new JScrollPane(tbl_local_pdb);
583 scrl_localPDB.setPreferredSize(new Dimension(width, height));
584 scrl_localPDB.setHorizontalScrollBarPolicy(
585 JScrollPane.HORIZONTAL_SCROLLBAR_NEVER);
587 chk_invertFilter.setFont(VERDANA_12);
588 txt_search.setToolTipText(JvSwingUtils.wrapTooltip(true,
589 MessageManager.getString("label.enter_pdb_id_tip")));
590 txt_search.getDocument().addDocumentListener(new DocumentListener()
593 public void insertUpdate(DocumentEvent e)
595 txt_search_ActionPerformedDelayed();
599 public void removeUpdate(DocumentEvent e)
601 txt_search_ActionPerformedDelayed();
605 public void changedUpdate(DocumentEvent e)
607 txt_search_ActionPerformedDelayed();
611 cmb_filterOption.setFont(VERDANA_12);
612 cmb_filterOption.setToolTipText(
613 MessageManager.getString("info.select_filter_option"));
614 cmb_filterOption.addItemListener(this);
615 // add CustomComboSeparatorsRenderer to filter option combo-box
616 cmb_filterOption.setRenderer(new CustomComboSeparatorsRenderer(
617 (ListCellRenderer<Object>) cmb_filterOption.getRenderer())
620 protected boolean addSeparatorAfter(JList list, FilterOption value,
623 return value.isAddSeparatorAfter();
627 chk_invertFilter.addItemListener(this);
628 btn_queryTDB = new JButton();
629 if (Platform.isMac())
631 // needed to make icon button have round corners in vaqua
632 btn_queryTDB.putClientProperty("JButton.buttonType", "bevel");
634 btn_queryTDB.setMargin(new Insets(0, 16, 0, 20));
636 .setText(MessageManager.getString("label.search_3dbeacons"));
637 btn_queryTDB.setIconTextGap(12);
638 btn_queryTDB.setIcon(tdbImage);
639 btn_queryTDB.setVerticalTextPosition(SwingConstants.CENTER);
640 btn_queryTDB.setHorizontalTextPosition(SwingConstants.TRAILING);
641 btn_queryTDB.setFont(VERDANA_12);
642 btn_queryTDB.setToolTipText(
643 MessageManager.getString("label.find_models_from_3dbeacons"));
644 // btn_queryTDB.setPreferredSize(new Dimension(200, 32));
645 btn_queryTDB.setVisible(false);
647 targetView.setVisible(false);
649 JPanel actionsPanel = new JPanel(new MigLayout());
650 actionsPanel.add(targetView, "left");
651 actionsPanel.add(btn_add, "wrap");
652 actionsPanel.add(chk_superpose, "left");
653 actionsPanel.add(btn_newView);
654 actionsPanel.add(btn_cancel, "right");
656 JPanel pnl_main = new JPanel(new BorderLayout());
657 JPanel pnl_controls = new JPanel();
658 pnl_queryTDB = new JPanel();
659 pnl_queryTDB.setLayout(new FlowLayout(FlowLayout.CENTER, 4, 4));
660 pnl_queryTDB.setBackground(getBackground());
661 pnl_queryTDB.add(btn_queryTDB);
663 pnl_queryTDB.setVisible(false);
664 pnl_main.add(pnl_queryTDB, BorderLayout.NORTH);
665 pnl_controls.add(cmb_filterOption);
666 pnl_controls.add(lbl_loading);
667 pnl_controls.add(chk_invertFilter);
668 pnl_main.add(pnl_controls, BorderLayout.CENTER);
669 lbl_loading.setVisible(false);
671 JPanel pnl_fileChooser = new JPanel(new FlowLayout());
672 pnl_fileChooser.add(btn_pdbFromFile);
673 pnl_fileChooser.add(lbl_fromFileStatus);
675 JPanel pnl_fileOptions = new JPanel();
676 pnl_fileOptions.setLayout(new GridBagLayout());
677 GridBagConstraints gbc = new GridBagConstraints();
682 gbc.insets = new Insets(0, 0, 18, 0);
683 gbc.fill = GridBagConstraints.NONE;
684 gbc.anchor = GridBagConstraints.FIRST_LINE_START;
685 pnl_fileOptions.add(pnl_fileChooser, gbc);
687 gbc.insets = new Insets(0, 0, 2, 0);
688 pnl_fileOptions.add(lbl_chooseTempFacType, gbc);
690 gbc.insets = new Insets(0, 0, 18, 0);
691 pnl_fileOptions.add(combo_tempFacAs, gbc);
694 pnl_fileOptions.add(btn_paeMatrixFile, gbc);
696 JPanel pnl_fileChooserBL = new JPanel(new BorderLayout());
697 pnl_fileChooserBL.add(fileChooserAssSeqPanel, BorderLayout.PAGE_START);
698 pnl_fileChooserBL.add(pnl_fileOptions, BorderLayout.CENTER);
700 JPanel pnl_idInput = new JPanel(new FlowLayout());
701 pnl_idInput.add(txt_search);
702 pnl_idInput.add(lbl_pdbManualFetchStatus);
704 JPanel pnl_idInputBL = new JPanel(new BorderLayout());
705 pnl_idInputBL.add(idInputAssSeqPanel, BorderLayout.NORTH);
706 pnl_idInputBL.add(pnl_idInput, BorderLayout.CENTER);
708 final String foundStructureSummary = MessageManager
709 .getString("label.found_structures_summary");
710 final String configureCols = MessageManager
711 .getString("label.configure_displayed_columns");
712 ChangeListener changeListener = new ChangeListener()
715 public void stateChanged(ChangeEvent changeEvent)
717 JTabbedPane sourceTabbedPane = (JTabbedPane) changeEvent
719 int index = sourceTabbedPane.getSelectedIndex();
720 btn_add.setVisible(targetView.isVisible());
721 btn_newView.setVisible(true);
722 btn_cancel.setVisible(true);
723 if (sourceTabbedPane.getTitleAt(index).equals(configureCols))
725 btn_add.setEnabled(false);
726 btn_cancel.setEnabled(false);
727 btn_add.setVisible(false);
728 btn_newView.setEnabled(false);
729 btn_cancel.setVisible(false);
730 previousWantedFields = getFTSDocFieldPrefs()
731 .getStructureSummaryFields()
732 .toArray(new FTSDataColumnI[0]);
734 if (sourceTabbedPane.getTitleAt(index)
735 .equals(foundStructureSummary))
737 btn_cancel.setEnabled(true);
738 if (wantedFieldsUpdated())
744 validateSelections();
749 pnl_filter.addChangeListener(changeListener);
750 pnl_filter.setPreferredSize(new Dimension(width, height));
751 pnl_filter.add(foundStructureSummary, scrl_foundStructures);
752 pnl_filter.add(configureCols, getFTSDocFieldPrefs());
754 JPanel pnl_locPDB = new JPanel(new BorderLayout());
755 pnl_locPDB.add(scrl_localPDB);
757 pnl_switchableViews.add(pnl_fileChooserBL, VIEWS_FROM_FILE);
758 pnl_switchableViews.add(pnl_idInputBL, VIEWS_ENTER_ID);
759 pnl_switchableViews.add(pnl_filter, VIEWS_FILTER);
760 pnl_switchableViews.add(pnl_locPDB, VIEWS_LOCAL_PDB);
762 this.setLayout(new BorderLayout());
763 this.add(pnl_main, java.awt.BorderLayout.NORTH);
764 this.add(pnl_switchableViews, java.awt.BorderLayout.CENTER);
765 // this.add(pnl_actions, java.awt.BorderLayout.SOUTH);
766 statusPanel.setLayout(new GridLayout());
768 JPanel pnl_actionsAndStatus = new JPanel(new BorderLayout());
769 pnl_actionsAndStatus.add(actionsPanel, BorderLayout.CENTER);
770 pnl_actionsAndStatus.add(statusPanel, BorderLayout.SOUTH);
771 statusPanel.add(statusBar, null);
772 this.add(pnl_actionsAndStatus, java.awt.BorderLayout.SOUTH);
774 mainFrame.addInternalFrameListener(
775 new javax.swing.event.InternalFrameAdapter()
778 public void internalFrameClosing(InternalFrameEvent e)
780 closeAction(pnl_filter.getHeight());
783 mainFrame.setVisible(true);
784 mainFrame.setContentPane(this);
785 mainFrame.setDefaultCloseOperation(JFrame.DISPOSE_ON_CLOSE);
786 Integer x = tempUserPrefs.get("structureChooser.x");
787 Integer y = tempUserPrefs.get("structureChooser.y");
788 if (x != null && y != null)
790 mainFrame.setLocation(x, y);
792 Desktop.addInternalFrame(mainFrame, frameTitle, width, height);
795 protected abstract boolean showPopupFor(int selectedRow, int x, int y);
797 protected void closeAction(int preferredHeight)
799 // System.out.println(">>>>>>>>>> closing internal frame!!!");
800 // System.out.println("width : " + mainFrame.getWidth());
801 // System.out.println("heigh : " + mainFrame.getHeight());
802 // System.out.println("x : " + mainFrame.getX());
803 // System.out.println("y : " + mainFrame.getY());
804 tempUserPrefs.put("structureChooser.width", pnl_filter.getWidth());
805 tempUserPrefs.put("structureChooser.height", preferredHeight);
806 tempUserPrefs.put("structureChooser.x", mainFrame.getX());
807 tempUserPrefs.put("structureChooser.y", mainFrame.getY());
811 public boolean wantedFieldsUpdated()
813 if (previousWantedFields == null)
818 FTSDataColumnI[] currentWantedFields = getFTSDocFieldPrefs()
819 .getStructureSummaryFields().toArray(new FTSDataColumnI[0]);
820 return Arrays.equals(currentWantedFields, previousWantedFields) ? false
827 * Event listener for the 'filter' combo-box and 'invert' check-box
829 public void itemStateChanged(ItemEvent e)
835 * This inner class provides the provides the data model for associate
836 * sequence combo-box - cmb_assSeq
841 public class AssociateSeqOptions
843 private SequenceI sequence;
847 public AssociateSeqOptions(SequenceI seq)
850 this.name = (seq.getName().length() >= 23)
851 ? seq.getName().substring(0, 23)
855 public AssociateSeqOptions(String name, SequenceI seq)
862 public String toString()
867 public String getName()
872 public void setName(String name)
877 public SequenceI getSequence()
882 public void setSequence(SequenceI sequence)
884 this.sequence = sequence;
890 * This inner class holds the Layout and configuration of the panel which
891 * handles association of manually fetched structures to a unique sequence
892 * when more than one sequence selection is made
897 public class AssociateSeqPanel extends JPanel implements ItemListener
899 private JComboBox<AssociateSeqOptions> cmb_assSeq = new JComboBox<>();
901 private JLabel lbl_associateSeq = new JLabel();
903 public AssociateSeqPanel()
905 this.setLayout(new FlowLayout());
906 this.add(cmb_assSeq);
907 this.add(lbl_associateSeq);
908 cmb_assSeq.setToolTipText(
909 MessageManager.getString("info.associate_wit_sequence"));
910 cmb_assSeq.addItemListener(this);
913 public void loadCmbAssSeq()
915 populateCmbAssociateSeqOptions(cmb_assSeq, lbl_associateSeq);
918 public JComboBox<AssociateSeqOptions> getCmb_assSeq()
923 public void setCmb_assSeq(JComboBox<AssociateSeqOptions> cmb_assSeq)
925 this.cmb_assSeq = cmb_assSeq;
929 public void itemStateChanged(ItemEvent e)
931 if (e.getStateChange() == ItemEvent.SELECTED)
933 cmbAssSeqStateChanged();
938 public JTable getResultTable()
943 public JComboBox<FilterOption> getCmbFilterOption()
945 return cmb_filterOption;
949 * Custom ListCellRenderer for adding a separator between different categories
950 * of structure chooser filter option drop-down.
955 public abstract class CustomComboSeparatorsRenderer
956 implements ListCellRenderer<Object>
958 private ListCellRenderer<Object> regent;
960 private JPanel separatorPanel = new JPanel(new BorderLayout());
962 private JSeparator jSeparator = new JSeparator();
964 public CustomComboSeparatorsRenderer(
965 ListCellRenderer<Object> listCellRenderer)
967 this.regent = listCellRenderer;
971 public Component getListCellRendererComponent(JList list, Object value,
972 int index, boolean isSelected, boolean cellHasFocus)
975 Component comp = regent.getListCellRendererComponent(list, value,
976 index, isSelected, cellHasFocus);
978 && addSeparatorAfter(list, (FilterOption) value, index))
980 separatorPanel.removeAll();
981 separatorPanel.add(comp, BorderLayout.CENTER);
982 separatorPanel.add(jSeparator, BorderLayout.SOUTH);
983 return separatorPanel;
991 protected abstract boolean addSeparatorAfter(JList list,
992 FilterOption value, int index);
995 protected abstract void stateChanged(ItemEvent e);
997 protected abstract void add_ActionPerformed();
999 protected abstract void newView_ActionPerformed();
1001 protected abstract void pdbFromFile_actionPerformed();
1003 protected abstract void txt_search_ActionPerformed();
1005 protected abstract void populateCmbAssociateSeqOptions(
1006 JComboBox<AssociateSeqOptions> cmb_assSeq,
1007 JLabel lbl_associateSeq);
1009 protected abstract void cmbAssSeqStateChanged();
1011 protected abstract void tabRefresh();
1013 protected abstract void validateSelections();
1015 public JInternalFrame getFrame()
1020 public void setPdbOptionsEnabled(boolean b)
1022 lbl_chooseTempFacType.setEnabled(b);
1023 combo_tempFacAs.setEnabled(b);
1024 btn_paeMatrixFile.setEnabled(b);