src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
   3  * Copyright (C) 2014 The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.util.MessageManager;
  24
  25 import java.awt.event.ActionEvent;
  26 import java.awt.event.ActionListener;
  27
  28 import javax.swing.ButtonGroup;
  29 import javax.swing.JInternalFrame;
  30 import javax.swing.JMenu;
  31 import javax.swing.JMenuBar;
  32 import javax.swing.JMenuItem;
  33 import javax.swing.JRadioButtonMenuItem;
  34
  35 public class GStructureViewer extends JInternalFrame
  36 {
  37   public GStructureViewer()
  38   {
  39     try
  40     {
  41       jbInit();
  42     } catch (Exception ex)
  43     {
  44       ex.printStackTrace();
  45     }
  46   }
  47
  48   private void jbInit() throws Exception
  49   {
  50     this.setJMenuBar(menuBar);
  51     fileMenu.setText(MessageManager.getString("action.file"));
  52     savemenu.setActionCommand(MessageManager.getString("action.save_image"));
  53     savemenu.setText(MessageManager.getString("action.save_as"));
  54     pdbFile.setText(MessageManager.getString("label.pdb_file"));
  55     pdbFile.addActionListener(new ActionListener()
  56     {
  57       public void actionPerformed(ActionEvent actionEvent)
  58       {
  59         pdbFile_actionPerformed(actionEvent);
  60       }
  61     });
  62     png.setText("PNG");
  63     png.addActionListener(new ActionListener()
  64     {
  65       public void actionPerformed(ActionEvent actionEvent)
  66       {
  67         png_actionPerformed(actionEvent);
  68       }
  69     });
  70     eps.setText("EPS");
  71     eps.addActionListener(new ActionListener()
  72     {
  73       public void actionPerformed(ActionEvent actionEvent)
  74       {
  75         eps_actionPerformed(actionEvent);
  76       }
  77     });
  78     viewMapping.setText(MessageManager.getString("label.view_mapping"));
  79     viewMapping.addActionListener(new ActionListener()
  80     {
  81       public void actionPerformed(ActionEvent actionEvent)
  82       {
  83         viewMapping_actionPerformed(actionEvent);
  84       }
  85     });
  86     viewMenu.setText(MessageManager.getString("action.view"));
  87     chainMenu.setText(MessageManager.getString("action.show_chain"));
  88     colourMenu.setText(MessageManager.getString("label.colours"));
  89     backGround.setText(MessageManager.getString("label.background_colour")
  90             + "...");
  91     backGround.addActionListener(new ActionListener()
  92     {
  93       public void actionPerformed(ActionEvent actionEvent)
  94       {
  95         backGround_actionPerformed(actionEvent);
  96       }
  97     });
  98     seqColour.setSelected(false);
  99     seqColour.setText(MessageManager.getString("action.by_sequence"));
 100     seqColour.addActionListener(new ActionListener()
 101     {
 102       public void actionPerformed(ActionEvent actionEvent)
 103       {
 104         seqColour_actionPerformed(actionEvent);
 105       }
 106     });
 107     chainColour.setText(MessageManager.getString("action.by_chain"));
 108     chainColour.addActionListener(new ActionListener()
 109     {
 110       public void actionPerformed(ActionEvent actionEvent)
 111       {
 112         chainColour_actionPerformed(actionEvent);
 113       }
 114     });
 115     chargeColour.setText(MessageManager.getString("label.charge_cysteine"));
 116     chargeColour.addActionListener(new ActionListener()
 117     {
 118       public void actionPerformed(ActionEvent actionEvent)
 119       {
 120         chargeColour_actionPerformed(actionEvent);
 121       }
 122     });
 123     zappoColour.setText(MessageManager.getString("label.zappo"));
 124     zappoColour.addActionListener(new ActionListener()
 125     {
 126       public void actionPerformed(ActionEvent actionEvent)
 127       {
 128         zappoColour_actionPerformed(actionEvent);
 129       }
 130     });
 131     taylorColour.setText(MessageManager.getString("label.taylor"));
 132     taylorColour.addActionListener(new ActionListener()
 133     {
 134       public void actionPerformed(ActionEvent actionEvent)
 135       {
 136         taylorColour_actionPerformed(actionEvent);
 137       }
 138     });
 139     hydroColour.setText(MessageManager.getString("label.hydrophobicity"));
 140     hydroColour.addActionListener(new ActionListener()
 141     {
 142       public void actionPerformed(ActionEvent actionEvent)
 143       {
 144         hydroColour_actionPerformed(actionEvent);
 145       }
 146     });
 147     strandColour.setText(MessageManager
 148             .getString("label.strand_propensity"));
 149     strandColour.addActionListener(new ActionListener()
 150     {
 151       public void actionPerformed(ActionEvent actionEvent)
 152       {
 153         strandColour_actionPerformed(actionEvent);
 154       }
 155     });
 156     helixColour.setText(MessageManager.getString("label.helix_propensity"));
 157     helixColour.addActionListener(new ActionListener()
 158     {
 159       public void actionPerformed(ActionEvent actionEvent)
 160       {
 161         helixColour_actionPerformed(actionEvent);
 162       }
 163     });
 164     turnColour.setText(MessageManager.getString("label.turn_propensity"));
 165     turnColour.addActionListener(new ActionListener()
 166     {
 167       public void actionPerformed(ActionEvent actionEvent)
 168       {
 169         turnColour_actionPerformed(actionEvent);
 170       }
 171     });
 172     buriedColour.setText(MessageManager.getString("label.buried_index"));
 173     buriedColour.addActionListener(new ActionListener()
 174     {
 175       public void actionPerformed(ActionEvent actionEvent)
 176       {
 177         buriedColour_actionPerformed(actionEvent);
 178       }
 179     });
 180     purinePyrimidineColour.setText(MessageManager
 181             .getString("label.purine_pyrimidine"));
 182     purinePyrimidineColour.addActionListener(new ActionListener()
 183     {
 184       public void actionPerformed(ActionEvent actionEvent)
 185       {
 186         purinePyrimidineColour_actionPerformed(actionEvent);
 187       }
 188     });
 189
 190     userColour.setText(MessageManager.getString("action.user_defined"));
 191     userColour.addActionListener(new ActionListener()
 192     {
 193       public void actionPerformed(ActionEvent actionEvent)
 194       {
 195         userColour_actionPerformed(actionEvent);
 196       }
 197     });
 198     viewerColour.setSelected(false);
 199     viewerColour
 200             .setText(MessageManager.getString("label.colour_with_jmol"));
 201     viewerColour.setToolTipText(MessageManager
 202             .getString("label.let_jmol_manage_structure_colours"));
 203     viewerColour.addActionListener(new ActionListener()
 204     {
 205       public void actionPerformed(ActionEvent actionEvent)
 206       {
 207         viewerColour_actionPerformed(actionEvent);
 208       }
 209     });
 210     helpMenu.setText(MessageManager.getString("action.help"));
 211     helpItem.setText(MessageManager.getString("label.jmol_help"));
 212     helpItem.addActionListener(new ActionListener()
 213     {
 214       public void actionPerformed(ActionEvent actionEvent)
 215       {
 216         showHelp_actionPerformed(actionEvent);
 217       }
 218     });
 219     alignStructs
 220             .setText(MessageManager.getString("label.align_structures"));
 221     alignStructs.addActionListener(new ActionListener()
 222     {
 223       public void actionPerformed(ActionEvent actionEvent)
 224       {
 225         alignStructs_actionPerformed(actionEvent);
 226       }
 227     });
 228     viewerActionMenu.setText(MessageManager.getString("label.jmol"));
 229     menuBar.add(fileMenu);
 230     menuBar.add(viewMenu);
 231     menuBar.add(colourMenu);
 232     menuBar.add(viewerActionMenu);
 233     viewerActionMenu.setVisible(false);
 234     menuBar.add(helpMenu);
 235     fileMenu.add(savemenu);
 236     fileMenu.add(viewMapping);
 237     savemenu.add(pdbFile);
 238     savemenu.add(png);
 239     savemenu.add(eps);
 240     viewMenu.add(chainMenu);
 241
 242     colourMenu.add(seqColour);
 243     colourMenu.add(chainColour);
 244     colourMenu.add(chargeColour);
 245     colourMenu.add(zappoColour);
 246     colourMenu.add(taylorColour);
 247     colourMenu.add(hydroColour);
 248     colourMenu.add(helixColour);
 249     colourMenu.add(strandColour);
 250     colourMenu.add(turnColour);
 251     colourMenu.add(buriedColour);
 252     colourMenu.add(purinePyrimidineColour);
 253     colourMenu.add(userColour);
 254     colourMenu.add(viewerColour);
 255     colourMenu.add(backGround);
 256
 257     colourButtons.add(seqColour);
 258     colourButtons.add(chainColour);
 259     colourButtons.add(chargeColour);
 260     colourButtons.add(zappoColour);
 261     colourButtons.add(taylorColour);
 262     colourButtons.add(hydroColour);
 263     colourButtons.add(helixColour);
 264     colourButtons.add(strandColour);
 265     colourButtons.add(turnColour);
 266     colourButtons.add(buriedColour);
 267     colourButtons.add(userColour);
 268     colourButtons.add(viewerColour);
 269
 270     helpMenu.add(helpItem);
 271     viewerActionMenu.add(alignStructs);
 272   }
 273
 274   protected void viewerColour_actionPerformed(ActionEvent actionEvent)
 275   {
 276   }
 277
 278   protected void alignStructs_actionPerformed(ActionEvent actionEvent)
 279   {
 280   }
 281
 282   JMenuBar menuBar = new JMenuBar();
 283
 284   JMenu fileMenu = new JMenu();
 285
 286   protected JMenu savemenu = new JMenu();
 287
 288   JMenuItem pdbFile = new JMenuItem();
 289
 290   JMenuItem png = new JMenuItem();
 291
 292   JMenuItem eps = new JMenuItem();
 293
 294   JMenuItem viewMapping = new JMenuItem();
 295
 296   protected JMenu viewMenu = new JMenu();
 297
 298   protected JMenu chainMenu = new JMenu();
 299
 300   JMenu jMenu1 = new JMenu();
 301
 302   protected JMenu colourMenu = new JMenu();
 303
 304   protected JMenu viewerActionMenu = new JMenu();
 305
 306   protected JMenuItem alignStructs = new JMenuItem();
 307
 308   JMenuItem backGround = new JMenuItem();
 309
 310   protected JRadioButtonMenuItem seqColour = new JRadioButtonMenuItem();
 311
 312   protected JRadioButtonMenuItem chainColour = new JRadioButtonMenuItem();
 313
 314   protected JRadioButtonMenuItem chargeColour = new JRadioButtonMenuItem();
 315
 316   protected JRadioButtonMenuItem zappoColour = new JRadioButtonMenuItem();
 317
 318   protected JRadioButtonMenuItem taylorColour = new JRadioButtonMenuItem();
 319
 320   protected JRadioButtonMenuItem hydroColour = new JRadioButtonMenuItem();
 321
 322   protected JRadioButtonMenuItem strandColour = new JRadioButtonMenuItem();
 323
 324   protected JRadioButtonMenuItem helixColour = new JRadioButtonMenuItem();
 325
 326   protected JRadioButtonMenuItem turnColour = new JRadioButtonMenuItem();
 327
 328   protected JRadioButtonMenuItem buriedColour = new JRadioButtonMenuItem();
 329
 330   protected JRadioButtonMenuItem purinePyrimidineColour = new JRadioButtonMenuItem();
 331
 332   protected JRadioButtonMenuItem userColour = new JRadioButtonMenuItem();
 333
 334   protected JRadioButtonMenuItem viewerColour = new JRadioButtonMenuItem();
 335
 336   protected ButtonGroup colourButtons = new ButtonGroup();
 337
 338   JMenu helpMenu = new JMenu();
 339
 340   protected JMenuItem helpItem = new JMenuItem();
 341
 342   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 343   {
 344
 345   }
 346
 347   public void png_actionPerformed(ActionEvent actionEvent)
 348   {
 349
 350   }
 351
 352   public void eps_actionPerformed(ActionEvent actionEvent)
 353   {
 354
 355   }
 356
 357   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 358   {
 359
 360   }
 361
 362   public void seqColour_actionPerformed(ActionEvent actionEvent)
 363   {
 364
 365   }
 366
 367   public void chainColour_actionPerformed(ActionEvent actionEvent)
 368   {
 369
 370   }
 371
 372   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 373   {
 374
 375   }
 376
 377   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 378   {
 379
 380   }
 381
 382   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 383   {
 384
 385   }
 386
 387   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 388   {
 389
 390   }
 391
 392   public void helixColour_actionPerformed(ActionEvent actionEvent)
 393   {
 394
 395   }
 396
 397   public void strandColour_actionPerformed(ActionEvent actionEvent)
 398   {
 399
 400   }
 401
 402   public void turnColour_actionPerformed(ActionEvent actionEvent)
 403   {
 404
 405   }
 406
 407   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 408   {
 409
 410   }
 411
 412   public void purinePyrimidineColour_actionPerformed(ActionEvent actionEvent)
 413   {
 414
 415   }
 416
 417   public void userColour_actionPerformed(ActionEvent actionEvent)
 418   {
 419
 420   }
 421
 422   public void backGround_actionPerformed(ActionEvent actionEvent)
 423   {
 424
 425   }
 426
 427   public void showHelp_actionPerformed(ActionEvent actionEvent)
 428   {
 429
 430   }
 431 }