src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
   3  * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
   4  *
   5  * This program is free software; you can redistribute it and/or
   6  * modify it under the terms of the GNU General Public License
   7  * as published by the Free Software Foundation; either version 2
   8  * of the License, or (at your option) any later version.
   9  *
  10  * This program is distributed in the hope that it will be useful,
  11  * but WITHOUT ANY WARRANTY; without even the implied warranty of
  12  * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  13  * GNU General Public License for more details.
  14  *
  15  * You should have received a copy of the GNU General Public License
  16  * along with this program; if not, write to the Free Software
  17  * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA  02110-1301, USA
  18  */
  19 package jalview.jbgui;
  20
  21 import javax.swing.*;
  22 import java.awt.event.ActionListener;
  23 import java.awt.event.ActionEvent;
  24
  25 public class GStructureViewer  extends JInternalFrame
  26 {
  27   public GStructureViewer()
  28   {
  29     try
  30     {
  31       jbInit();
  32     }
  33     catch (Exception ex)
  34     {
  35       ex.printStackTrace();
  36     }
  37   }
  38
  39   private void jbInit()
  40       throws Exception
  41   {
  42     this.setJMenuBar(menuBar);
  43     fileMenu.setText("File");
  44     savemenu.setActionCommand("Save Image");
  45     savemenu.setText("Save As");
  46     pdbFile.setText("PDB File");
  47     pdbFile.addActionListener(new ActionListener()
  48     {
  49       public void actionPerformed(ActionEvent actionEvent)
  50       {
  51         pdbFile_actionPerformed(actionEvent);
  52       }
  53     });
  54     png.setText("PNG");
  55     png.addActionListener(new ActionListener()
  56     {
  57       public void actionPerformed(ActionEvent actionEvent)
  58       {
  59         png_actionPerformed(actionEvent);
  60       }
  61     });
  62     eps.setText("EPS");
  63     eps.addActionListener(new ActionListener()
  64     {
  65       public void actionPerformed(ActionEvent actionEvent)
  66       {
  67         eps_actionPerformed(actionEvent);
  68       }
  69     });
  70     viewMapping.setText("View Mapping");
  71     viewMapping.addActionListener(new ActionListener()
  72     {
  73       public void actionPerformed(ActionEvent actionEvent)
  74       {
  75         viewMapping_actionPerformed(actionEvent);
  76       }
  77     });
  78     viewMenu.setText("View");
  79     chainMenu.setText("Show Chain");
  80     colourMenu.setText("Colours");
  81     backGround.setText("Background Colour...");
  82     backGround.addActionListener(new ActionListener()
  83     {
  84       public void actionPerformed(ActionEvent actionEvent)
  85       {
  86         backGround_actionPerformed(actionEvent);
  87       }
  88     });
  89     seqColour.setSelected(true);
  90     seqColour.setText("By Sequence");
  91     seqColour.addActionListener(new ActionListener()
  92     {
  93       public void actionPerformed(ActionEvent actionEvent)
  94       {
  95         seqColour_actionPerformed(actionEvent);
  96       }
  97     });
  98     chainColour.setText("By Chain");
  99     chainColour.addActionListener(new ActionListener()
 100     {
 101       public void actionPerformed(ActionEvent actionEvent)
 102       {
 103         chainColour_actionPerformed(actionEvent);
 104       }
 105     });
 106     chargeColour.setText("Charge & Cysteine");
 107     chargeColour.addActionListener(new ActionListener()
 108     {
 109       public void actionPerformed(ActionEvent actionEvent)
 110       {
 111         chargeColour_actionPerformed(actionEvent);
 112       }
 113     });
 114     zappoColour.setText("Zappo");
 115     zappoColour.addActionListener(new ActionListener()
 116     {
 117       public void actionPerformed(ActionEvent actionEvent)
 118       {
 119         zappoColour_actionPerformed(actionEvent);
 120       }
 121     });
 122     taylorColour.setText("Taylor");
 123     taylorColour.addActionListener(new ActionListener()
 124     {
 125       public void actionPerformed(ActionEvent actionEvent)
 126       {
 127         taylorColour_actionPerformed(actionEvent);
 128       }
 129     });
 130     hydroColour.setText("Hydro");
 131     hydroColour.addActionListener(new ActionListener()
 132     {
 133       public void actionPerformed(ActionEvent actionEvent)
 134       {
 135         hydroColour_actionPerformed(actionEvent);
 136       }
 137     });
 138     strandColour.setText("Strand");
 139     strandColour.addActionListener(new ActionListener()
 140     {
 141       public void actionPerformed(ActionEvent actionEvent)
 142       {
 143         strandColour_actionPerformed(actionEvent);
 144       }
 145     });
 146     helixColour.setText("Helix Propensity");
 147     helixColour.addActionListener(new ActionListener()
 148     {
 149       public void actionPerformed(ActionEvent actionEvent)
 150       {
 151         helixColour_actionPerformed(actionEvent);
 152       }
 153     });
 154     turnColour.setText("Turn Propensity");
 155     turnColour.addActionListener(new ActionListener()
 156     {
 157       public void actionPerformed(ActionEvent actionEvent)
 158       {
 159         turnColour_actionPerformed(actionEvent);
 160       }
 161     });
 162     buriedColour.setText("Buried Index");
 163     buriedColour.addActionListener(new ActionListener()
 164     {
 165       public void actionPerformed(ActionEvent actionEvent)
 166       {
 167         buriedColour_actionPerformed(actionEvent);
 168       }
 169     });
 170     userColour.setText("User Defined ...");
 171     userColour.addActionListener(new ActionListener()
 172     {
 173       public void actionPerformed(ActionEvent actionEvent)
 174       {
 175         userColour_actionPerformed(actionEvent);
 176       }
 177     });
 178     helpMenu.setText("Help");
 179     jmolHelp.setText("Jmol Help");
 180     jmolHelp.addActionListener(new ActionListener()
 181     {
 182       public void actionPerformed(ActionEvent actionEvent)
 183       {
 184         jmolHelp_actionPerformed(actionEvent);
 185       }
 186     });
 187     menuBar.add(fileMenu);
 188     menuBar.add(viewMenu);
 189     menuBar.add(colourMenu);
 190     menuBar.add(helpMenu);
 191     fileMenu.add(savemenu);
 192     fileMenu.add(viewMapping);
 193     savemenu.add(pdbFile);
 194     savemenu.add(png);
 195     savemenu.add(eps);
 196     viewMenu.add(chainMenu);
 197     colourMenu.add(seqColour);
 198     colourMenu.add(chainColour);
 199     colourMenu.add(chargeColour);
 200     colourMenu.add(zappoColour);
 201     colourMenu.add(taylorColour);
 202     colourMenu.add(hydroColour);
 203     colourMenu.add(helixColour);
 204     colourMenu.add(strandColour);
 205     colourMenu.add(turnColour);
 206     colourMenu.add(buriedColour);
 207     colourMenu.add(userColour);
 208     colourMenu.add(backGround);
 209     helpMenu.add(jmolHelp);
 210   }
 211
 212   JMenuBar menuBar = new JMenuBar();
 213   JMenu fileMenu = new JMenu();
 214   JMenu savemenu = new JMenu();
 215   JMenuItem pdbFile = new JMenuItem();
 216   JMenuItem png = new JMenuItem();
 217   JMenuItem eps = new JMenuItem();
 218   JMenuItem viewMapping = new JMenuItem();
 219   JMenu viewMenu = new JMenu();
 220   protected JMenu chainMenu = new JMenu();
 221   JMenu jMenu1 = new JMenu();
 222   JMenu colourMenu = new JMenu();
 223   JMenuItem backGround = new JMenuItem();
 224   protected JCheckBoxMenuItem seqColour = new JCheckBoxMenuItem();
 225   JMenuItem chainColour = new JMenuItem();
 226   JMenuItem chargeColour = new JMenuItem();
 227   JMenuItem zappoColour = new JMenuItem();
 228   JMenuItem taylorColour = new JMenuItem();
 229   JMenuItem hydroColour = new JMenuItem();
 230   JMenuItem strandColour = new JMenuItem();
 231   JMenuItem helixColour = new JMenuItem();
 232   JMenuItem turnColour = new JMenuItem();
 233   JMenuItem buriedColour = new JMenuItem();
 234   JMenuItem userColour = new JMenuItem();
 235   JMenu helpMenu = new JMenu();
 236   JMenuItem jmolHelp = new JMenuItem();
 237   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 238   {
 239
 240   }
 241
 242   public void png_actionPerformed(ActionEvent actionEvent)
 243   {
 244
 245   }
 246
 247   public void eps_actionPerformed(ActionEvent actionEvent)
 248   {
 249
 250   }
 251
 252   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 253   {
 254
 255   }
 256
 257   public void seqColour_actionPerformed(ActionEvent actionEvent)
 258   {
 259
 260   }
 261
 262   public void chainColour_actionPerformed(ActionEvent actionEvent)
 263   {
 264
 265   }
 266
 267   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 268   {
 269
 270   }
 271
 272   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 273   {
 274
 275   }
 276
 277   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 278   {
 279
 280   }
 281
 282   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 283   {
 284
 285   }
 286
 287   public void helixColour_actionPerformed(ActionEvent actionEvent)
 288   {
 289
 290   }
 291
 292   public void strandColour_actionPerformed(ActionEvent actionEvent)
 293   {
 294
 295   }
 296
 297   public void turnColour_actionPerformed(ActionEvent actionEvent)
 298   {
 299
 300   }
 301
 302   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 303   {
 304
 305   }
 306
 307   public void userColour_actionPerformed(ActionEvent actionEvent)
 308   {
 309
 310   }
 311
 312   public void backGround_actionPerformed(ActionEvent actionEvent)
 313   {
 314
 315   }
 316
 317   public void jmolHelp_actionPerformed(ActionEvent actionEvent)
 318   {
 319
 320   }
 321 }