src/jalview/jbgui/GStructureViewer.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
   3  * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  */
  18 package jalview.jbgui;
  19
  20 import javax.swing.*;
  21 import java.awt.event.ActionListener;
  22 import java.awt.event.ActionEvent;
  23
  24 public class GStructureViewer extends JInternalFrame
  25 {
  26   public GStructureViewer()
  27   {
  28     try
  29     {
  30       jbInit();
  31     } catch (Exception ex)
  32     {
  33       ex.printStackTrace();
  34     }
  35   }
  36
  37   private void jbInit() throws Exception
  38   {
  39     this.setJMenuBar(menuBar);
  40     fileMenu.setText("File");
  41     savemenu.setActionCommand("Save Image");
  42     savemenu.setText("Save As");
  43     pdbFile.setText("PDB File");
  44     pdbFile.addActionListener(new ActionListener()
  45     {
  46       public void actionPerformed(ActionEvent actionEvent)
  47       {
  48         pdbFile_actionPerformed(actionEvent);
  49       }
  50     });
  51     png.setText("PNG");
  52     png.addActionListener(new ActionListener()
  53     {
  54       public void actionPerformed(ActionEvent actionEvent)
  55       {
  56         png_actionPerformed(actionEvent);
  57       }
  58     });
  59     eps.setText("EPS");
  60     eps.addActionListener(new ActionListener()
  61     {
  62       public void actionPerformed(ActionEvent actionEvent)
  63       {
  64         eps_actionPerformed(actionEvent);
  65       }
  66     });
  67     viewMapping.setText("View Mapping");
  68     viewMapping.addActionListener(new ActionListener()
  69     {
  70       public void actionPerformed(ActionEvent actionEvent)
  71       {
  72         viewMapping_actionPerformed(actionEvent);
  73       }
  74     });
  75     viewMenu.setText("View");
  76     chainMenu.setText("Show Chain");
  77     colourMenu.setText("Colours");
  78     backGround.setText("Background Colour...");
  79     backGround.addActionListener(new ActionListener()
  80     {
  81       public void actionPerformed(ActionEvent actionEvent)
  82       {
  83         backGround_actionPerformed(actionEvent);
  84       }
  85     });
  86     seqColour.setSelected(true);
  87     seqColour.setText("By Sequence");
  88     seqColour.addActionListener(new ActionListener()
  89     {
  90       public void actionPerformed(ActionEvent actionEvent)
  91       {
  92         seqColour_actionPerformed(actionEvent);
  93       }
  94     });
  95     chainColour.setText("By Chain");
  96     chainColour.addActionListener(new ActionListener()
  97     {
  98       public void actionPerformed(ActionEvent actionEvent)
  99       {
 100         chainColour_actionPerformed(actionEvent);
 101       }
 102     });
 103     chargeColour.setText("Charge & Cysteine");
 104     chargeColour.addActionListener(new ActionListener()
 105     {
 106       public void actionPerformed(ActionEvent actionEvent)
 107       {
 108         chargeColour_actionPerformed(actionEvent);
 109       }
 110     });
 111     zappoColour.setText("Zappo");
 112     zappoColour.addActionListener(new ActionListener()
 113     {
 114       public void actionPerformed(ActionEvent actionEvent)
 115       {
 116         zappoColour_actionPerformed(actionEvent);
 117       }
 118     });
 119     taylorColour.setText("Taylor");
 120     taylorColour.addActionListener(new ActionListener()
 121     {
 122       public void actionPerformed(ActionEvent actionEvent)
 123       {
 124         taylorColour_actionPerformed(actionEvent);
 125       }
 126     });
 127     hydroColour.setText("Hydro");
 128     hydroColour.addActionListener(new ActionListener()
 129     {
 130       public void actionPerformed(ActionEvent actionEvent)
 131       {
 132         hydroColour_actionPerformed(actionEvent);
 133       }
 134     });
 135     strandColour.setText("Strand");
 136     strandColour.addActionListener(new ActionListener()
 137     {
 138       public void actionPerformed(ActionEvent actionEvent)
 139       {
 140         strandColour_actionPerformed(actionEvent);
 141       }
 142     });
 143     helixColour.setText("Helix Propensity");
 144     helixColour.addActionListener(new ActionListener()
 145     {
 146       public void actionPerformed(ActionEvent actionEvent)
 147       {
 148         helixColour_actionPerformed(actionEvent);
 149       }
 150     });
 151     turnColour.setText("Turn Propensity");
 152     turnColour.addActionListener(new ActionListener()
 153     {
 154       public void actionPerformed(ActionEvent actionEvent)
 155       {
 156         turnColour_actionPerformed(actionEvent);
 157       }
 158     });
 159     buriedColour.setText("Buried Index");
 160     buriedColour.addActionListener(new ActionListener()
 161     {
 162       public void actionPerformed(ActionEvent actionEvent)
 163       {
 164         buriedColour_actionPerformed(actionEvent);
 165       }
 166     });
 167     userColour.setText("User Defined ...");
 168     userColour.addActionListener(new ActionListener()
 169     {
 170       public void actionPerformed(ActionEvent actionEvent)
 171       {
 172         userColour_actionPerformed(actionEvent);
 173       }
 174     });
 175     helpMenu.setText("Help");
 176     jmolHelp.setText("Jmol Help");
 177     jmolHelp.addActionListener(new ActionListener()
 178     {
 179       public void actionPerformed(ActionEvent actionEvent)
 180       {
 181         jmolHelp_actionPerformed(actionEvent);
 182       }
 183     });
 184     menuBar.add(fileMenu);
 185     menuBar.add(viewMenu);
 186     menuBar.add(colourMenu);
 187     menuBar.add(helpMenu);
 188     fileMenu.add(savemenu);
 189     fileMenu.add(viewMapping);
 190     savemenu.add(pdbFile);
 191     savemenu.add(png);
 192     savemenu.add(eps);
 193     viewMenu.add(chainMenu);
 194     colourMenu.add(seqColour);
 195     colourMenu.add(chainColour);
 196     colourMenu.add(chargeColour);
 197     colourMenu.add(zappoColour);
 198     colourMenu.add(taylorColour);
 199     colourMenu.add(hydroColour);
 200     colourMenu.add(helixColour);
 201     colourMenu.add(strandColour);
 202     colourMenu.add(turnColour);
 203     colourMenu.add(buriedColour);
 204     colourMenu.add(userColour);
 205     colourMenu.add(backGround);
 206     helpMenu.add(jmolHelp);
 207   }
 208
 209   JMenuBar menuBar = new JMenuBar();
 210
 211   JMenu fileMenu = new JMenu();
 212
 213   JMenu savemenu = new JMenu();
 214
 215   JMenuItem pdbFile = new JMenuItem();
 216
 217   JMenuItem png = new JMenuItem();
 218
 219   JMenuItem eps = new JMenuItem();
 220
 221   JMenuItem viewMapping = new JMenuItem();
 222
 223   JMenu viewMenu = new JMenu();
 224
 225   protected JMenu chainMenu = new JMenu();
 226
 227   JMenu jMenu1 = new JMenu();
 228
 229   JMenu colourMenu = new JMenu();
 230
 231   JMenuItem backGround = new JMenuItem();
 232
 233   protected JCheckBoxMenuItem seqColour = new JCheckBoxMenuItem();
 234
 235   JMenuItem chainColour = new JMenuItem();
 236
 237   JMenuItem chargeColour = new JMenuItem();
 238
 239   JMenuItem zappoColour = new JMenuItem();
 240
 241   JMenuItem taylorColour = new JMenuItem();
 242
 243   JMenuItem hydroColour = new JMenuItem();
 244
 245   JMenuItem strandColour = new JMenuItem();
 246
 247   JMenuItem helixColour = new JMenuItem();
 248
 249   JMenuItem turnColour = new JMenuItem();
 250
 251   JMenuItem buriedColour = new JMenuItem();
 252
 253   JMenuItem userColour = new JMenuItem();
 254
 255   JMenu helpMenu = new JMenu();
 256
 257   JMenuItem jmolHelp = new JMenuItem();
 258
 259   public void pdbFile_actionPerformed(ActionEvent actionEvent)
 260   {
 261
 262   }
 263
 264   public void png_actionPerformed(ActionEvent actionEvent)
 265   {
 266
 267   }
 268
 269   public void eps_actionPerformed(ActionEvent actionEvent)
 270   {
 271
 272   }
 273
 274   public void viewMapping_actionPerformed(ActionEvent actionEvent)
 275   {
 276
 277   }
 278
 279   public void seqColour_actionPerformed(ActionEvent actionEvent)
 280   {
 281
 282   }
 283
 284   public void chainColour_actionPerformed(ActionEvent actionEvent)
 285   {
 286
 287   }
 288
 289   public void chargeColour_actionPerformed(ActionEvent actionEvent)
 290   {
 291
 292   }
 293
 294   public void zappoColour_actionPerformed(ActionEvent actionEvent)
 295   {
 296
 297   }
 298
 299   public void taylorColour_actionPerformed(ActionEvent actionEvent)
 300   {
 301
 302   }
 303
 304   public void hydroColour_actionPerformed(ActionEvent actionEvent)
 305   {
 306
 307   }
 308
 309   public void helixColour_actionPerformed(ActionEvent actionEvent)
 310   {
 311
 312   }
 313
 314   public void strandColour_actionPerformed(ActionEvent actionEvent)
 315   {
 316
 317   }
 318
 319   public void turnColour_actionPerformed(ActionEvent actionEvent)
 320   {
 321
 322   }
 323
 324   public void buriedColour_actionPerformed(ActionEvent actionEvent)
 325   {
 326
 327   }
 328
 329   public void userColour_actionPerformed(ActionEvent actionEvent)
 330   {
 331
 332   }
 333
 334   public void backGround_actionPerformed(ActionEvent actionEvent)
 335   {
 336
 337   }
 338
 339   public void jmolHelp_actionPerformed(ActionEvent actionEvent)
 340   {
 341
 342   }
 343 }