src/jalview/jbgui/GTreePanel.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import java.awt.BorderLayout;
  24 import java.awt.Color;
  25 import java.awt.event.ActionEvent;
  26 import java.awt.event.ActionListener;
  27
  28 import javax.swing.JCheckBoxMenuItem;
  29 import javax.swing.JInternalFrame;
  30 import javax.swing.JMenu;
  31 import javax.swing.JMenuBar;
  32 import javax.swing.JMenuItem;
  33 import javax.swing.JScrollPane;
  34 import javax.swing.event.MenuEvent;
  35 import javax.swing.event.MenuListener;
  36
  37 import jalview.util.ImageMaker.TYPE;
  38 import jalview.util.MessageManager;
  39
  40 @SuppressWarnings("serial")
  41 public class GTreePanel extends JInternalFrame
  42 {
  43   BorderLayout borderLayout1 = new BorderLayout();
  44
  45   public JScrollPane scrollPane = new JScrollPane();
  46
  47   JMenuBar jMenuBar1 = new JMenuBar();
  48
  49   JMenu fileMenu = new JMenu();
  50
  51   JMenuItem saveAsNewick = new JMenuItem();
  52
  53   JMenuItem printMenu = new JMenuItem();
  54
  55   protected JMenu viewMenu = new JMenu();
  56
  57   public JMenuItem font = new JMenuItem();
  58
  59   public JMenuItem sortAssocViews = new JMenuItem();
  60
  61   public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();
  62
  63   public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();
  64
  65   public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();
  66
  67   public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();
  68
  69   JMenuItem pngTree = new JMenuItem();
  70
  71   JMenuItem epsTree = new JMenuItem();
  72
  73   JMenu saveAsMenu = new JMenu();
  74
  75   JMenuItem textbox = new JMenuItem();
  76
  77   public JMenuItem originalSeqData = new JMenuItem();
  78
  79   protected JMenu associateLeavesMenu = new JMenu();
  80
  81   public GTreePanel()
  82   {
  83     try
  84     {
  85       jbInit();
  86       this.setJMenuBar(jMenuBar1);
  87     } catch (Exception e)
  88     {
  89       e.printStackTrace();
  90     }
  91   }
  92
  93   private void jbInit() throws Exception
  94   {
  95     setFrameIcon(null);
  96     setName("jalview-tree");
  97     this.getContentPane().setLayout(borderLayout1);
  98     this.setBackground(Color.white);
  99     this.setFont(new java.awt.Font("Verdana", 0, 12));
 100     scrollPane.setOpaque(false);
 101     fileMenu.setText(MessageManager.getString("action.file"));
 102     saveAsNewick.setText(MessageManager.getString("label.newick_format"));
 103     saveAsNewick.addActionListener(new ActionListener()
 104     {
 105       @Override
 106       public void actionPerformed(ActionEvent e)
 107       {
 108         saveAsNewick_actionPerformed(e);
 109       }
 110     });
 111     printMenu.setText(MessageManager.getString("action.print"));
 112     printMenu.addActionListener(new java.awt.event.ActionListener()
 113     {
 114       @Override
 115       public void actionPerformed(ActionEvent e)
 116       {
 117         printMenu_actionPerformed(e);
 118       }
 119     });
 120     viewMenu.setText(MessageManager.getString("action.view"));
 121     viewMenu.addMenuListener(new MenuListener()
 122     {
 123       @Override
 124       public void menuSelected(MenuEvent e)
 125       {
 126         viewMenu_menuSelected();
 127       }
 128
 129       @Override
 130       public void menuDeselected(MenuEvent e)
 131       {
 132       }
 133
 134       @Override
 135       public void menuCanceled(MenuEvent e)
 136       {
 137       }
 138     });
 139     sortAssocViews.setText(
 140             MessageManager.getString("label.sort_alignment_by_tree"));
 141     sortAssocViews.addActionListener(new java.awt.event.ActionListener()
 142     {
 143       @Override
 144       public void actionPerformed(ActionEvent e)
 145       {
 146         sortByTree_actionPerformed();
 147       }
 148     });
 149     font.setText(MessageManager.getString("action.font"));
 150     font.addActionListener(new java.awt.event.ActionListener()
 151     {
 152       @Override
 153       public void actionPerformed(ActionEvent e)
 154       {
 155         font_actionPerformed(e);
 156       }
 157     });
 158     bootstrapMenu.setText(
 159             MessageManager.getString("label.show_bootstrap_values"));
 160     bootstrapMenu.addActionListener(new java.awt.event.ActionListener()
 161     {
 162       @Override
 163       public void actionPerformed(ActionEvent e)
 164       {
 165         bootstrapMenu_actionPerformed(e);
 166       }
 167     });
 168     distanceMenu.setText(MessageManager.getString("label.show_distances"));
 169     distanceMenu.addActionListener(new java.awt.event.ActionListener()
 170     {
 171       @Override
 172       public void actionPerformed(ActionEvent e)
 173       {
 174         distanceMenu_actionPerformed(e);
 175       }
 176     });
 177     fitToWindow.setSelected(true);
 178     fitToWindow.setText(MessageManager.getString("label.fit_to_window"));
 179     fitToWindow.addActionListener(new java.awt.event.ActionListener()
 180     {
 181       @Override
 182       public void actionPerformed(ActionEvent e)
 183       {
 184         fitToWindow_actionPerformed(e);
 185       }
 186     });
 187     epsTree.setText("EPS");
 188     epsTree.addActionListener(new java.awt.event.ActionListener()
 189     {
 190       @Override
 191       public void actionPerformed(ActionEvent e)
 192       {
 193         writeTreeImage(TYPE.EPS);
 194       }
 195     });
 196     pngTree.setText("PNG");
 197     pngTree.addActionListener(new java.awt.event.ActionListener()
 198     {
 199       @Override
 200       public void actionPerformed(ActionEvent e)
 201       {
 202         writeTreeImage(TYPE.PNG);
 203       }
 204     });
 205     saveAsMenu.setText(MessageManager.getString("action.save_as"));
 206     placeholdersMenu.setToolTipText(MessageManager.getString(
 207             "label.marks_leaves_tree_not_associated_with_sequence"));
 208     placeholdersMenu.setText(
 209             MessageManager.getString("label.mark_unlinked_leaves"));
 210     placeholdersMenu.addActionListener(new ActionListener()
 211     {
 212       @Override
 213       public void actionPerformed(ActionEvent e)
 214       {
 215         placeholdersMenu_actionPerformed(e);
 216       }
 217     });
 218     textbox.setText(MessageManager.getString("label.out_to_textbox"));
 219     textbox.addActionListener(new ActionListener()
 220     {
 221       @Override
 222       public void actionPerformed(ActionEvent e)
 223       {
 224         textbox_actionPerformed(e);
 225       }
 226     });
 227     originalSeqData.setText(MessageManager.getString("label.input_data"));
 228     originalSeqData.addActionListener(new ActionListener()
 229     {
 230       @Override
 231       public void actionPerformed(ActionEvent e)
 232       {
 233         originalSeqData_actionPerformed(e);
 234       }
 235     });
 236     associateLeavesMenu.setText(
 237             MessageManager.getString("label.associate_leaves_with"));
 238     this.getContentPane().add(scrollPane, BorderLayout.CENTER);
 239     jMenuBar1.add(fileMenu);
 240     jMenuBar1.add(viewMenu);
 241     fileMenu.add(saveAsMenu);
 242     fileMenu.add(textbox);
 243     fileMenu.add(printMenu);
 244     fileMenu.add(originalSeqData);
 245     viewMenu.add(fitToWindow);
 246     viewMenu.add(font);
 247     viewMenu.add(distanceMenu);
 248     viewMenu.add(bootstrapMenu);
 249     viewMenu.add(placeholdersMenu);
 250     viewMenu.add(sortAssocViews);
 251     viewMenu.add(associateLeavesMenu);
 252     saveAsMenu.add(saveAsNewick);
 253     saveAsMenu.add(epsTree);
 254     saveAsMenu.add(pngTree);
 255   }
 256
 257   public void printMenu_actionPerformed(ActionEvent e)
 258   {
 259   }
 260
 261   public void font_actionPerformed(ActionEvent e)
 262   {
 263   }
 264
 265   public void distanceMenu_actionPerformed(ActionEvent e)
 266   {
 267   }
 268
 269   public void bootstrapMenu_actionPerformed(ActionEvent e)
 270   {
 271   }
 272
 273   public void fitToWindow_actionPerformed(ActionEvent e)
 274   {
 275   }
 276
 277   public void writeTreeImage(TYPE imageType)
 278   {
 279   }
 280
 281   public void saveAsNewick_actionPerformed(ActionEvent e)
 282   {
 283   }
 284
 285   public void placeholdersMenu_actionPerformed(ActionEvent e)
 286   {
 287   }
 288
 289   public void textbox_actionPerformed(ActionEvent e)
 290   {
 291   }
 292
 293   public void fullid_actionPerformed(ActionEvent e)
 294   {
 295
 296   }
 297
 298   public void originalSeqData_actionPerformed(ActionEvent e)
 299   {
 300
 301   }
 302
 303   public void viewMenu_menuSelected()
 304   {
 305   }
 306
 307   public void sortByTree_actionPerformed()
 308   {
 309
 310   }
 311
 312 }