2 * Jalview - A Sequence Alignment Editor and Viewer
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3 * Copyright (C) 2006 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.jbgui;
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22 import java.awt.event.*;
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23 import javax.swing.*;
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24 import javax.swing.event.MenuListener;
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25 import javax.swing.event.MenuEvent;
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27 public class GTreePanel
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28 extends JInternalFrame
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30 BorderLayout borderLayout1 = new BorderLayout();
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31 public JScrollPane scrollPane = new JScrollPane();
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32 JMenuBar jMenuBar1 = new JMenuBar();
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33 JMenu fileMenu = new JMenu();
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34 JMenuItem saveAsNewick = new JMenuItem();
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35 JMenuItem printMenu = new JMenuItem();
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36 protected JMenu viewMenu = new JMenu();
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37 public JMenuItem font = new JMenuItem();
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38 public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();
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39 public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();
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40 public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();
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41 public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();
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42 JMenuItem pngTree = new JMenuItem();
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43 JMenuItem epsTree = new JMenuItem();
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44 JMenu saveAsMenu = new JMenu();
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45 JMenuItem textbox = new JMenuItem();
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46 public JMenuItem originalSeqData = new JMenuItem();
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47 protected JMenu associateLeavesMenu = new JMenu();
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53 this.setJMenuBar(jMenuBar1);
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57 e.printStackTrace();
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61 private void jbInit()
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64 this.getContentPane().setLayout(borderLayout1);
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65 this.setBackground(Color.white);
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66 this.setFont(new java.awt.Font("Verdana", 0, 12));
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67 scrollPane.setOpaque(false);
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68 fileMenu.setText("File");
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69 saveAsNewick.setText("Newick Format");
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70 saveAsNewick.addActionListener(new ActionListener()
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72 public void actionPerformed(ActionEvent e)
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74 saveAsNewick_actionPerformed(e);
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77 printMenu.setText("Print");
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78 printMenu.addActionListener(new java.awt.event.ActionListener()
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80 public void actionPerformed(ActionEvent e)
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82 printMenu_actionPerformed(e);
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85 viewMenu.setText("View");
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86 viewMenu.addMenuListener(new MenuListener()
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88 public void menuSelected(MenuEvent e)
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90 viewMenu_menuSelected();
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93 public void menuDeselected(MenuEvent e)
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97 public void menuCanceled(MenuEvent e)
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101 font.setText("Font...");
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102 font.addActionListener(new java.awt.event.ActionListener()
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104 public void actionPerformed(ActionEvent e)
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106 font_actionPerformed(e);
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109 bootstrapMenu.setText("Show Bootstrap Values");
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110 bootstrapMenu.addActionListener(new java.awt.event.ActionListener()
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112 public void actionPerformed(ActionEvent e)
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114 bootstrapMenu_actionPerformed(e);
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117 distanceMenu.setText("Show Distances");
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118 distanceMenu.addActionListener(new java.awt.event.ActionListener()
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120 public void actionPerformed(ActionEvent e)
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122 distanceMenu_actionPerformed(e);
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125 fitToWindow.setSelected(true);
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126 fitToWindow.setText("Fit To Window");
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127 fitToWindow.addActionListener(new java.awt.event.ActionListener()
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129 public void actionPerformed(ActionEvent e)
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131 fitToWindow_actionPerformed(e);
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134 epsTree.setText("EPS");
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135 epsTree.addActionListener(new java.awt.event.ActionListener()
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137 public void actionPerformed(ActionEvent e)
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139 epsTree_actionPerformed(e);
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142 pngTree.setText("PNG");
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143 pngTree.addActionListener(new java.awt.event.ActionListener()
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145 public void actionPerformed(ActionEvent e)
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147 pngTree_actionPerformed(e);
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150 saveAsMenu.setText("Save as");
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151 placeholdersMenu.setToolTipText(
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152 "Marks leaves of tree not associated with a sequence");
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153 placeholdersMenu.setText("Mark Unlinked Leaves");
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154 placeholdersMenu.addActionListener(new ActionListener()
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156 public void actionPerformed(ActionEvent e)
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158 placeholdersMenu_actionPerformed(e);
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161 textbox.setText("Output to Textbox...");
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162 textbox.addActionListener(new ActionListener()
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164 public void actionPerformed(ActionEvent e)
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166 textbox_actionPerformed(e);
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169 originalSeqData.setText("Input Data...");
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170 originalSeqData.addActionListener(new ActionListener()
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172 public void actionPerformed(ActionEvent e)
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174 originalSeqData_actionPerformed(e);
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177 associateLeavesMenu.setText("Associate Leaves With");
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178 this.getContentPane().add(scrollPane, BorderLayout.CENTER);
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179 jMenuBar1.add(fileMenu);
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180 jMenuBar1.add(viewMenu);
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181 fileMenu.add(saveAsMenu);
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182 fileMenu.add(textbox);
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183 fileMenu.add(printMenu);
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184 fileMenu.add(originalSeqData);
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185 viewMenu.add(fitToWindow);
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186 viewMenu.add(font);
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187 viewMenu.add(distanceMenu);
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188 viewMenu.add(bootstrapMenu);
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189 viewMenu.add(placeholdersMenu);
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190 viewMenu.add(associateLeavesMenu);
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191 saveAsMenu.add(saveAsNewick);
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192 saveAsMenu.add(epsTree);
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193 saveAsMenu.add(pngTree);
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196 public void printMenu_actionPerformed(ActionEvent e)
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200 public void font_actionPerformed(ActionEvent e)
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204 public void distanceMenu_actionPerformed(ActionEvent e)
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208 public void bootstrapMenu_actionPerformed(ActionEvent e)
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212 public void fitToWindow_actionPerformed(ActionEvent e)
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216 public void pngTree_actionPerformed(ActionEvent e)
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220 public void epsTree_actionPerformed(ActionEvent e)
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224 public void saveAsNewick_actionPerformed(ActionEvent e)
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228 public void placeholdersMenu_actionPerformed(ActionEvent e)
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232 public void textbox_actionPerformed(ActionEvent e)
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236 public void fullid_actionPerformed(ActionEvent e)
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241 public void originalSeqData_actionPerformed(ActionEvent e)
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246 public void viewMenu_menuSelected()
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