src/jalview/jbgui/GTreePanel.java

   1 /*
   2  * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
   3  * Copyright (C) $$Year-Rel$$ The Jalview Authors
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3
  10  * of the License, or (at your option) any later version.
  11  *
  12  * Jalview is distributed in the hope that it will be useful, but
  13  * WITHOUT ANY WARRANTY; without even the implied warranty
  14  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  15  * PURPOSE.  See the GNU General Public License for more details.
  16  *
  17  * You should have received a copy of the GNU General Public License
  18  * along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  19  * The Jalview Authors are detailed in the 'AUTHORS' file.
  20  */
  21 package jalview.jbgui;
  22
  23 import jalview.util.ImageMaker.TYPE;
  24 import jalview.util.MessageManager;
  25
  26 import java.awt.BorderLayout;
  27 import java.awt.Color;
  28 import java.awt.event.ActionEvent;
  29 import java.awt.event.ActionListener;
  30
  31 import javax.swing.JCheckBoxMenuItem;
  32 import javax.swing.JInternalFrame;
  33 import javax.swing.JMenu;
  34 import javax.swing.JMenuBar;
  35 import javax.swing.JMenuItem;
  36 import javax.swing.JScrollPane;
  37 import javax.swing.event.MenuEvent;
  38 import javax.swing.event.MenuListener;
  39
  40 @SuppressWarnings("serial")
  41 public class GTreePanel extends JInternalFrame
  42 {
  43   BorderLayout borderLayout1 = new BorderLayout();
  44
  45   public JScrollPane scrollPane = new JScrollPane();
  46
  47   JMenuBar jMenuBar1 = new JMenuBar();
  48
  49   JMenu fileMenu = new JMenu();
  50
  51   JMenuItem saveAsNewick = new JMenuItem();
  52
  53   JMenuItem printMenu = new JMenuItem();
  54
  55   protected JMenu viewMenu = new JMenu();
  56
  57   public JMenuItem font = new JMenuItem();
  58
  59   public JMenuItem sortAssocViews = new JMenuItem();
  60
  61   public JCheckBoxMenuItem bootstrapMenu = new JCheckBoxMenuItem();
  62
  63   public JCheckBoxMenuItem distanceMenu = new JCheckBoxMenuItem();
  64
  65   public JCheckBoxMenuItem fitToWindow = new JCheckBoxMenuItem();
  66
  67   public JCheckBoxMenuItem placeholdersMenu = new JCheckBoxMenuItem();
  68
  69   JMenuItem pngTree = new JMenuItem();
  70
  71   JMenuItem epsTree = new JMenuItem();
  72
  73   JMenu saveAsMenu = new JMenu();
  74
  75   JMenuItem textbox = new JMenuItem();
  76
  77   public JMenuItem originalSeqData = new JMenuItem();
  78
  79   protected JMenu associateLeavesMenu = new JMenu();
  80
  81   public GTreePanel()
  82   {
  83     try
  84     {
  85       jbInit();
  86       this.setJMenuBar(jMenuBar1);
  87     } catch (Exception e)
  88     {
  89       e.printStackTrace();
  90     }
  91   }
  92
  93   private void jbInit() throws Exception
  94   {
  95     setName("jalview-tree");
  96     this.getContentPane().setLayout(borderLayout1);
  97     this.setBackground(Color.white);
  98     this.setFont(new java.awt.Font("Verdana", 0, 12));
  99     scrollPane.setOpaque(false);
 100     fileMenu.setText(MessageManager.getString("action.file"));
 101     saveAsNewick.setText(MessageManager.getString("label.newick_format"));
 102     saveAsNewick.addActionListener(new ActionListener()
 103     {
 104       @Override
 105       public void actionPerformed(ActionEvent e)
 106       {
 107         saveAsNewick_actionPerformed(e);
 108       }
 109     });
 110     printMenu.setText(MessageManager.getString("action.print"));
 111     printMenu.addActionListener(new java.awt.event.ActionListener()
 112     {
 113       @Override
 114       public void actionPerformed(ActionEvent e)
 115       {
 116         printMenu_actionPerformed(e);
 117       }
 118     });
 119     viewMenu.setText(MessageManager.getString("action.view"));
 120     viewMenu.addMenuListener(new MenuListener()
 121     {
 122       @Override
 123       public void menuSelected(MenuEvent e)
 124       {
 125         viewMenu_menuSelected();
 126       }
 127
 128       @Override
 129       public void menuDeselected(MenuEvent e)
 130       {
 131       }
 132
 133       @Override
 134       public void menuCanceled(MenuEvent e)
 135       {
 136       }
 137     });
 138     sortAssocViews.setText(
 139             MessageManager.getString("label.sort_alignment_by_tree"));
 140     sortAssocViews.addActionListener(new java.awt.event.ActionListener()
 141     {
 142       @Override
 143       public void actionPerformed(ActionEvent e)
 144       {
 145         sortByTree_actionPerformed();
 146       }
 147     });
 148     font.setText(MessageManager.getString("action.font"));
 149     font.addActionListener(new java.awt.event.ActionListener()
 150     {
 151       @Override
 152       public void actionPerformed(ActionEvent e)
 153       {
 154         font_actionPerformed(e);
 155       }
 156     });
 157     bootstrapMenu.setText(
 158             MessageManager.getString("label.show_bootstrap_values"));
 159     bootstrapMenu.addActionListener(new java.awt.event.ActionListener()
 160     {
 161       @Override
 162       public void actionPerformed(ActionEvent e)
 163       {
 164         bootstrapMenu_actionPerformed(e);
 165       }
 166     });
 167     distanceMenu.setText(MessageManager.getString("label.show_distances"));
 168     distanceMenu.addActionListener(new java.awt.event.ActionListener()
 169     {
 170       @Override
 171       public void actionPerformed(ActionEvent e)
 172       {
 173         distanceMenu_actionPerformed(e);
 174       }
 175     });
 176     fitToWindow.setSelected(true);
 177     fitToWindow.setText(MessageManager.getString("label.fit_to_window"));
 178     fitToWindow.addActionListener(new java.awt.event.ActionListener()
 179     {
 180       @Override
 181       public void actionPerformed(ActionEvent e)
 182       {
 183         fitToWindow_actionPerformed(e);
 184       }
 185     });
 186     epsTree.setText("EPS");
 187     epsTree.addActionListener(new java.awt.event.ActionListener()
 188     {
 189       @Override
 190       public void actionPerformed(ActionEvent e)
 191       {
 192         writeTreeImage(TYPE.EPS);
 193       }
 194     });
 195     pngTree.setText("PNG");
 196     pngTree.addActionListener(new java.awt.event.ActionListener()
 197     {
 198       @Override
 199       public void actionPerformed(ActionEvent e)
 200       {
 201         writeTreeImage(TYPE.PNG);
 202       }
 203     });
 204     saveAsMenu.setText(MessageManager.getString("action.save_as"));
 205     placeholdersMenu.setToolTipText(MessageManager.getString(
 206             "label.marks_leaves_tree_not_associated_with_sequence"));
 207     placeholdersMenu.setText(
 208             MessageManager.getString("label.mark_unlinked_leaves"));
 209     placeholdersMenu.addActionListener(new ActionListener()
 210     {
 211       @Override
 212       public void actionPerformed(ActionEvent e)
 213       {
 214         placeholdersMenu_actionPerformed(e);
 215       }
 216     });
 217     textbox.setText(MessageManager.getString("label.out_to_textbox"));
 218     textbox.addActionListener(new ActionListener()
 219     {
 220       @Override
 221       public void actionPerformed(ActionEvent e)
 222       {
 223         textbox_actionPerformed(e);
 224       }
 225     });
 226     originalSeqData.setText(MessageManager.getString("label.input_data"));
 227     originalSeqData.addActionListener(new ActionListener()
 228     {
 229       @Override
 230       public void actionPerformed(ActionEvent e)
 231       {
 232         originalSeqData_actionPerformed(e);
 233       }
 234     });
 235     associateLeavesMenu.setText(
 236             MessageManager.getString("label.associate_leaves_with"));
 237     this.getContentPane().add(scrollPane, BorderLayout.CENTER);
 238     jMenuBar1.add(fileMenu);
 239     jMenuBar1.add(viewMenu);
 240     fileMenu.add(saveAsMenu);
 241     fileMenu.add(textbox);
 242     fileMenu.add(printMenu);
 243     fileMenu.add(originalSeqData);
 244     viewMenu.add(fitToWindow);
 245     viewMenu.add(font);
 246     viewMenu.add(distanceMenu);
 247     viewMenu.add(bootstrapMenu);
 248     viewMenu.add(placeholdersMenu);
 249     viewMenu.add(sortAssocViews);
 250     viewMenu.add(associateLeavesMenu);
 251     saveAsMenu.add(saveAsNewick);
 252     saveAsMenu.add(epsTree);
 253     saveAsMenu.add(pngTree);
 254   }
 255
 256   public void printMenu_actionPerformed(ActionEvent e)
 257   {
 258   }
 259
 260   public void font_actionPerformed(ActionEvent e)
 261   {
 262   }
 263
 264   public void distanceMenu_actionPerformed(ActionEvent e)
 265   {
 266   }
 267
 268   public void bootstrapMenu_actionPerformed(ActionEvent e)
 269   {
 270   }
 271
 272   public void fitToWindow_actionPerformed(ActionEvent e)
 273   {
 274   }
 275
 276   public void writeTreeImage(TYPE imageType)
 277   {
 278   }
 279
 280   public void saveAsNewick_actionPerformed(ActionEvent e)
 281   {
 282   }
 283
 284   public void placeholdersMenu_actionPerformed(ActionEvent e)
 285   {
 286   }
 287
 288   public void textbox_actionPerformed(ActionEvent e)
 289   {
 290   }
 291
 292   public void fullid_actionPerformed(ActionEvent e)
 293   {
 294
 295   }
 296
 297   public void originalSeqData_actionPerformed(ActionEvent e)
 298   {
 299
 300   }
 301
 302   public void viewMenu_menuSelected()
 303   {
 304   }
 305
 306   public void sortByTree_actionPerformed()
 307   {
 308
 309   }
 310
 311 }