2 * Jalview - A Sequence Alignment Editor and Viewer ($$Version-Rel$$)
3 * Copyright (C) $$Year-Rel$$ The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.json.binding.biojson.v1;
23 import java.util.ArrayList;
24 import java.util.List;
26 import com.github.reinert.jjschema.Attributes;
28 public class AlignmentAnnotationPojo
33 description = "Label for the Alignment Annotation")
38 description = "Description for the Alignment Annotation")
39 private String description;
41 @Attributes(required = false)
42 private List<AnnotationPojo> annotations = new ArrayList<AnnotationPojo>();
46 enums = { "0", "1", "2" },
47 description = "Determines the rendered for the annotation<br><ul><li>0 - No graph</li><li>1 - Bar Graph</li><li>2 - Line graph</li></ul>")
48 private int graphType;
52 description = "Reference to the sequence in the alignment<br> if per-sequence annotation")
53 private String sequenceRef;
57 description = "Stores display settings for an annotation")
58 private AnnotationDisplaySettingPojo annotationSettings;
60 @Attributes(required = false, description = "Score of the annotation")
63 @Attributes(required = false, description = "Annotation generation source")
64 private String calcId;
66 public String getLabel()
71 public void setLabel(String label)
76 public String getDescription()
81 public void setDescription(String annotationId)
83 this.description = annotationId;
86 public List<AnnotationPojo> getAnnotations()
91 public void setAnnotations(List<AnnotationPojo> annotations)
93 this.annotations = annotations;
96 public String getSequenceRef()
101 public void setSequenceRef(String sequenceRef)
103 this.sequenceRef = sequenceRef;
106 public int getGraphType()
111 public void setGraphType(int graphType)
113 this.graphType = graphType;
116 public AnnotationDisplaySettingPojo getAnnotationSettings()
118 return annotationSettings;
121 public void setAnnotationSettings(
122 AnnotationDisplaySettingPojo annotationSettings)
124 this.annotationSettings = annotationSettings;
127 public double getScore()
132 public void setScore(double score)
137 public String getCalcId()
142 public void setCalcId(String calcId)
144 this.calcId = calcId;