1 package jalview.json.binding.biojson.v1;
3 import java.util.ArrayList;
5 import com.github.reinert.jjschema.Attributes;
7 public class SequenceGrpPojo
11 description = "The <a href=\"#colourScheme\">Colour Scheme</a> applied to the Sequence Group")
12 private String colourScheme;
16 description = "The name assigned to the seqGroup")
17 private String groupName;
21 description = "Serial version identifier for the <b>seqGroup</b> object model")
22 private String description;
26 description = "Determines if the seqGroup border should be visible or not")
27 private boolean displayBoxes;
31 description = "Determines if the texts of the group is displayed or not")
32 private boolean displayText;
36 description = "Determines if the residues text for the group is coloured")
37 private boolean colourText;
41 description = "Boolean value indicating whether residues should only be shown <br/>that are different from current reference or consensus sequence")
42 private boolean showNonconserved;
46 description = "The index of the group’s first residue in the alignment space")
51 description = "The index of the group’s last residue in the alignment space")
58 description = "An array of the unique id's for the sequences belonging to the group")
59 private ArrayList<String> sequenceRefs = new ArrayList<String>();
61 public String getColourScheme()
66 public void setColourScheme(String colourScheme)
68 this.colourScheme = colourScheme;
71 public String getGroupName()
76 public void setGroupName(String groupName)
78 this.groupName = groupName;
81 public String getDescription()
86 public void setDescription(String description)
88 this.description = description;
91 public boolean isDisplayBoxes()
96 public void setDisplayBoxes(boolean displayBoxes)
98 this.displayBoxes = displayBoxes;
101 public boolean isDisplayText()
106 public void setDisplayText(boolean displayText)
108 this.displayText = displayText;
111 public boolean isColourText()
116 public void setColourText(boolean colourText)
118 this.colourText = colourText;
121 public boolean isShowNonconserved()
123 return showNonconserved;
126 public void setShowNonconserved(boolean showNonconserved)
128 this.showNonconserved = showNonconserved;
131 public int getStartRes()
136 public void setStartRes(int startRes)
138 this.startRes = startRes;
141 public int getEndRes()
146 public void setEndRes(int endRes)
148 this.endRes = endRes;
151 public ArrayList<String> getSequenceRefs()
156 public void setSequenceRefs(ArrayList<String> sequenceRefs)
158 this.sequenceRefs = sequenceRefs;