1 package jalview.json.binding.biojson.v1;
3 import java.util.ArrayList;
5 import com.github.reinert.jjschema.Attributes;
7 public class SequenceGrpPojo
9 @Attributes(required = true, description = "Serial version identifier for the <b>seqGroup</b> object model")
10 private String svid = "1.0";
12 @Attributes(required = false, description = "The Colour Scheme applied to the Sequence Group")
13 private String colourScheme;
15 @Attributes(required = true, description = "The name assigned to the seqGroup")
16 private String groupName;
18 @Attributes(required = false, description = "Serial version identifier for the <b>seqGroup</b> object model")
19 private String description;
21 @Attributes(required = false, description = "Determines if the seqGroup border should be visible or not")
22 private boolean displayBoxes;
24 @Attributes(required = false, description = "Determines if the texts of the group is displayed or not")
25 private boolean displayText;
27 @Attributes(required = false, description = "Determines if the residues text for the group is coloured")
28 private boolean colourText;
30 @Attributes(required = false, description = "Boolean value indicating whether residues should only be shown <br/>that are different from current reference or consensus sequence")
31 private boolean showNonconserved;
33 @Attributes(required = true, description = "The index of the group’s first residue in the alignment space")
36 @Attributes(required = true, description = "The index of the group’s last residue in the alignment space")
39 @Attributes(required = true, minItems = 1, maxItems = 1999999999, uniqueItems=true, description = "An array of the unique id's for the sequences belonging to the group")
40 private ArrayList<String> sequenceRefs = new ArrayList<String>();
42 public String getColourScheme()
47 public void setColourScheme(String colourScheme)
49 this.colourScheme = colourScheme;
52 public String getGroupName()
57 public void setGroupName(String groupName)
59 this.groupName = groupName;
62 public String getDescription()
67 public void setDescription(String description)
69 this.description = description;
72 public boolean isDisplayBoxes()
77 public void setDisplayBoxes(boolean displayBoxes)
79 this.displayBoxes = displayBoxes;
82 public boolean isDisplayText()
87 public void setDisplayText(boolean displayText)
89 this.displayText = displayText;
92 public boolean isColourText()
97 public void setColourText(boolean colourText)
99 this.colourText = colourText;
102 public boolean isShowNonconserved()
104 return showNonconserved;
107 public void setShowNonconserved(boolean showNonconserved)
109 this.showNonconserved = showNonconserved;
112 public int getStartRes()
117 public void setStartRes(int startRes)
119 this.startRes = startRes;
122 public int getEndRes()
127 public void setEndRes(int endRes)
129 this.endRes = endRes;
132 public ArrayList<String> getSequenceRefs()
137 public void setSequenceRefs(ArrayList<String> sequenceRefs)
139 this.sequenceRefs = sequenceRefs;
142 public String getSvid()