1 package jalview.json.binding.biojson.v1;
3 import java.util.ArrayList;
5 import com.github.reinert.jjschema.Attributes;
7 public class SequenceGrpPojo
11 description = "The <a href=\"colour_schemes.html\">Colour Scheme</a> applied to the Sequence Group")
12 private String colourScheme;
14 @Attributes(required = true, description = "The name assigned to the seqGroup")
15 private String groupName;
17 @Attributes(required = false, description = "Serial version identifier for the <b>seqGroup</b> object model")
18 private String description;
20 @Attributes(required = false, description = "Determines if the seqGroup border should be visible or not")
21 private boolean displayBoxes;
23 @Attributes(required = false, description = "Determines if the texts of the group is displayed or not")
24 private boolean displayText;
26 @Attributes(required = false, description = "Determines if the residues text for the group is coloured")
27 private boolean colourText;
29 @Attributes(required = false, description = "Boolean value indicating whether residues should only be shown <br/>that are different from current reference or consensus sequence")
30 private boolean showNonconserved;
32 @Attributes(required = true, description = "The index of the group’s first residue in the alignment space")
35 @Attributes(required = true, description = "The index of the group’s last residue in the alignment space")
41 maxItems = 2147483647,
43 description = "An array of the unique id's for the sequences belonging to the group")
44 private ArrayList<String> sequenceRefs = new ArrayList<String>();
46 public String getColourScheme()
51 public void setColourScheme(String colourScheme)
53 this.colourScheme = colourScheme;
56 public String getGroupName()
61 public void setGroupName(String groupName)
63 this.groupName = groupName;
66 public String getDescription()
71 public void setDescription(String description)
73 this.description = description;
76 public boolean isDisplayBoxes()
81 public void setDisplayBoxes(boolean displayBoxes)
83 this.displayBoxes = displayBoxes;
86 public boolean isDisplayText()
91 public void setDisplayText(boolean displayText)
93 this.displayText = displayText;
96 public boolean isColourText()
101 public void setColourText(boolean colourText)
103 this.colourText = colourText;
106 public boolean isShowNonconserved()
108 return showNonconserved;
111 public void setShowNonconserved(boolean showNonconserved)
113 this.showNonconserved = showNonconserved;
116 public int getStartRes()
121 public void setStartRes(int startRes)
123 this.startRes = startRes;
126 public int getEndRes()
131 public void setEndRes(int endRes)
133 this.endRes = endRes;
136 public ArrayList<String> getSequenceRefs()
141 public void setSequenceRefs(ArrayList<String> sequenceRefs)
143 this.sequenceRefs = sequenceRefs;