src/jalview/json/binding/v1/AlignmentPojo.java

   1 package jalview.json.binding.v1;
   2
   3 import java.util.ArrayList;
   4 import java.util.List;
   5
   6 public class AlignmentPojo
   7 {
   8   private String svid = "1.0";
   9
  10   private List<SequencePojo> seqs = new ArrayList<SequencePojo>();
  11
  12   private List<AlignmentAnnotationPojo> alignAnnotation = new ArrayList<AlignmentAnnotationPojo>();
  13
  14   private List<SequenceGrpPojo> seqGroups = new ArrayList<SequenceGrpPojo>();
  15
  16   private List<SequenceFeaturesPojo> seqFeatures = new ArrayList<SequenceFeaturesPojo>();
  17
  18   private JalviewSettingsPojo jalviewSettings;
  19
  20   public AlignmentPojo()
  21   {
  22   }
  23
  24   public List<SequencePojo> getSeqs()
  25   {
  26     return seqs;
  27   }
  28
  29   public void setSeqs(ArrayList<SequencePojo> seqs)
  30   {
  31     this.seqs = seqs;
  32   }
  33
  34   public JalviewSettingsPojo getJalviewSettings()
  35   {
  36     return jalviewSettings;
  37   }
  38
  39   public void setJalviewSettings(JalviewSettingsPojo jalviewSettings)
  40   {
  41     this.jalviewSettings = jalviewSettings;
  42   }
  43
  44   public List<AlignmentAnnotationPojo> getAlignAnnotation()
  45   {
  46     return alignAnnotation;
  47   }
  48
  49   public void setAlignAnnotation(
  50           List<AlignmentAnnotationPojo> alignAnnotation)
  51   {
  52     this.alignAnnotation = alignAnnotation;
  53   }
  54
  55   public List<SequenceGrpPojo> getSeqGroups()
  56   {
  57     return seqGroups;
  58   }
  59
  60   public void setSeqGroups(List<SequenceGrpPojo> seqGroups)
  61   {
  62     this.seqGroups = seqGroups;
  63   }
  64
  65   public List<SequenceFeaturesPojo> getSeqFeatures()
  66   {
  67     return seqFeatures;
  68   }
  69
  70   public void setSeqFeatures(List<SequenceFeaturesPojo> seqFeatures)
  71   {
  72     this.seqFeatures = seqFeatures;
  73   }
  74
  75   public String getSvid()
  76   {
  77     return svid;
  78   }
  79 }