1 package jalview.json.binding.v1;
3 import java.util.ArrayList;
6 public class AlignmentPojo
8 private String svid = "1.0";
10 private List<SequencePojo> seqs = new ArrayList<SequencePojo>();
12 private List<AlignmentAnnotationPojo> alignAnnotation = new ArrayList<AlignmentAnnotationPojo>();
14 private List<SequenceGrpPojo> seqGroups = new ArrayList<SequenceGrpPojo>();
16 private List<SequenceFeaturesPojo> seqFeatures = new ArrayList<SequenceFeaturesPojo>();
18 private JalviewSettingsPojo jalviewSettings;
20 public AlignmentPojo()
24 public List<SequencePojo> getSeqs()
29 public void setSeqs(ArrayList<SequencePojo> seqs)
34 public JalviewSettingsPojo getJalviewSettings()
36 return jalviewSettings;
39 public void setJalviewSettings(JalviewSettingsPojo jalviewSettings)
41 this.jalviewSettings = jalviewSettings;
44 public List<AlignmentAnnotationPojo> getAlignAnnotation()
46 return alignAnnotation;
49 public void setAlignAnnotation(
50 List<AlignmentAnnotationPojo> alignAnnotation)
52 this.alignAnnotation = alignAnnotation;
55 public List<SequenceGrpPojo> getSeqGroups()
60 public void setSeqGroups(List<SequenceGrpPojo> seqGroups)
62 this.seqGroups = seqGroups;
65 public List<SequenceFeaturesPojo> getSeqFeatures()
70 public void setSeqFeatures(List<SequenceFeaturesPojo> seqFeatures)
72 this.seqFeatures = seqFeatures;
75 public String getSvid()