src/jalview/json/binding/v1/AlignmentPojo.java

   1 package jalview.json.binding.v1;
   2
   3 import java.util.ArrayList;
   4 import java.util.List;
   5
   6 public class AlignmentPojo
   7 {
   8   private List<SequencePojo> seqs = new ArrayList<SequencePojo>();
   9
  10   private List<AlignmentAnnotationPojo> alignAnnotation = new ArrayList<AlignmentAnnotationPojo>();
  11
  12   private List<SequenceGrpPojo> seqGroups = new ArrayList<SequenceGrpPojo>();
  13
  14   private List<SequenceFeaturesPojo> seqFeatures = new ArrayList<SequenceFeaturesPojo>();
  15
  16   private JalviewSettingsPojo jalviewSettings;
  17
  18   public AlignmentPojo()
  19   {
  20   }
  21
  22   public List<SequencePojo> getSeqs()
  23   {
  24     return seqs;
  25   }
  26
  27   public void setSeqs(ArrayList<SequencePojo> seqs)
  28   {
  29     this.seqs = seqs;
  30   }
  31
  32   public JalviewSettingsPojo getJalviewSettings()
  33   {
  34     return jalviewSettings;
  35   }
  36
  37   public void setJalviewSettings(JalviewSettingsPojo jalviewSettings)
  38   {
  39     this.jalviewSettings = jalviewSettings;
  40   }
  41
  42   public List<AlignmentAnnotationPojo> getAlignAnnotation()
  43   {
  44     return alignAnnotation;
  45   }
  46
  47   public void setAlignAnnotation(
  48           List<AlignmentAnnotationPojo> alignAnnotation)
  49   {
  50     this.alignAnnotation = alignAnnotation;
  51   }
  52
  53   public List<SequenceGrpPojo> getSeqGroups()
  54   {
  55     return seqGroups;
  56   }
  57
  58   public void setSeqGroups(List<SequenceGrpPojo> seqGroups)
  59   {
  60     this.seqGroups = seqGroups;
  61   }
  62
  63   public List<SequenceFeaturesPojo> getSeqFeatures()
  64   {
  65     return seqFeatures;
  66   }
  67
  68   public void setSeqFeatures(List<SequenceFeaturesPojo> seqFeatures)
  69   {
  70     this.seqFeatures = seqFeatures;
  71   }
  72
  73
  74 }