1 package jalview.json.binding.v1;
3 import java.util.ArrayList;
6 public class AlignmentPojo
8 private List<SequencePojo> seqs = new ArrayList<SequencePojo>();
10 private List<AlignmentAnnotationPojo> alignAnnotation = new ArrayList<AlignmentAnnotationPojo>();
12 private List<SequenceGrpPojo> seqGroups = new ArrayList<SequenceGrpPojo>();
14 private List<SequenceFeaturesPojo> seqFeatures = new ArrayList<SequenceFeaturesPojo>();
16 private JalviewSettingsPojo jalviewSettings;
18 public AlignmentPojo()
22 public List<SequencePojo> getSeqs()
27 public void setSeqs(ArrayList<SequencePojo> seqs)
32 public JalviewSettingsPojo getJalviewSettings()
34 return jalviewSettings;
37 public void setJalviewSettings(JalviewSettingsPojo jalviewSettings)
39 this.jalviewSettings = jalviewSettings;
42 public List<AlignmentAnnotationPojo> getAlignAnnotation()
44 return alignAnnotation;
47 public void setAlignAnnotation(
48 List<AlignmentAnnotationPojo> alignAnnotation)
50 this.alignAnnotation = alignAnnotation;
53 public List<SequenceGrpPojo> getSeqGroups()
58 public void setSeqGroups(List<SequenceGrpPojo> seqGroups)
60 this.seqGroups = seqGroups;
63 public List<SequenceFeaturesPojo> getSeqFeatures()
68 public void setSeqFeatures(List<SequenceFeaturesPojo> seqFeatures)
70 this.seqFeatures = seqFeatures;