src/jalview/schemabinding/version2/AnnotationDescriptor.java

   1 /*\r
   2  * This class was automatically generated with \r
   3  * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML\r
   4  * Schema.\r
   5  * $Id$\r
   6  */\r
   7 \r
   8 package jalview.schemabinding.version2;\r
   9 \r
  10   //---------------------------------/\r
  11  //- Imported classes and packages -/\r
  12 //---------------------------------/\r
  13 \r
  14 import org.exolab.castor.mapping.AccessMode;\r
  15 import org.exolab.castor.xml.TypeValidator;\r
  16 import org.exolab.castor.xml.XMLFieldDescriptor;\r
  17 import org.exolab.castor.xml.validators.*;\r
  18 \r
  19 /**\r
  20  * Class AnnotationDescriptor.\r
  21  * \r
  22  * @version $Revision$ $Date$\r
  23  */\r
  24 public class AnnotationDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {\r
  25 \r
  26 \r
  27       //--------------------------/\r
  28      //- Class/Member Variables -/\r
  29     //--------------------------/\r
  30 \r
  31     /**\r
  32      * Field nsPrefix\r
  33      */\r
  34     private java.lang.String nsPrefix;\r
  35 \r
  36     /**\r
  37      * Field nsURI\r
  38      */\r
  39     private java.lang.String nsURI;\r
  40 \r
  41     /**\r
  42      * Field xmlName\r
  43      */\r
  44     private java.lang.String xmlName;\r
  45 \r
  46     /**\r
  47      * Field identity\r
  48      */\r
  49     private org.exolab.castor.xml.XMLFieldDescriptor identity;\r
  50 \r
  51 \r
  52       //----------------/\r
  53      //- Constructors -/\r
  54     //----------------/\r
  55 \r
  56     public AnnotationDescriptor() {\r
  57         super();\r
  58         nsURI = "www.vamsas.ac.uk/jalview/version2";\r
  59         xmlName = "Annotation";\r
  60         \r
  61         //-- set grouping compositor\r
  62         setCompositorAsSequence();\r
  63         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;\r
  64         org.exolab.castor.xml.XMLFieldHandler              handler        = null;\r
  65         org.exolab.castor.xml.FieldValidator               fieldValidator = null;\r
  66         //-- initialize attribute descriptors\r
  67         \r
  68         //-- _graph\r
  69         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_graph", "graph", org.exolab.castor.xml.NodeType.Attribute);\r
  70         handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
  71             public java.lang.Object getValue( java.lang.Object object ) \r
  72                 throws IllegalStateException\r
  73             {\r
  74                 Annotation target = (Annotation) object;\r
  75                 if(!target.hasGraph())\r
  76                     return null;\r
  77                 return (target.getGraph() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);\r
  78             }\r
  79             public void setValue( java.lang.Object object, java.lang.Object value) \r
  80                 throws IllegalStateException, IllegalArgumentException\r
  81             {\r
  82                 try {\r
  83                     Annotation target = (Annotation) object;\r
  84                     // ignore null values for non optional primitives\r
  85                     if (value == null) return;\r
  86                     \r
  87                     target.setGraph( ((java.lang.Boolean)value).booleanValue());\r
  88                 }\r
  89                 catch (java.lang.Exception ex) {\r
  90                     throw new IllegalStateException(ex.toString());\r
  91                 }\r
  92             }\r
  93             public java.lang.Object newInstance( java.lang.Object parent ) {\r
  94                 return null;\r
  95             }\r
  96         } );\r
  97         desc.setHandler(handler);\r
  98         desc.setRequired(true);\r
  99         addFieldDescriptor(desc);\r
 100         \r
 101         //-- validation code for: _graph\r
 102         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 103         fieldValidator.setMinOccurs(1);\r
 104         { //-- local scope\r
 105             BooleanValidator typeValidator = new BooleanValidator();\r
 106             fieldValidator.setValidator(typeValidator);\r
 107         }\r
 108         desc.setValidator(fieldValidator);\r
 109         //-- _graphType\r
 110         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphType", "graphType", org.exolab.castor.xml.NodeType.Attribute);\r
 111         handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
 112             public java.lang.Object getValue( java.lang.Object object ) \r
 113                 throws IllegalStateException\r
 114             {\r
 115                 Annotation target = (Annotation) object;\r
 116                 if(!target.hasGraphType())\r
 117                     return null;\r
 118                 return new java.lang.Integer(target.getGraphType());\r
 119             }\r
 120             public void setValue( java.lang.Object object, java.lang.Object value) \r
 121                 throws IllegalStateException, IllegalArgumentException\r
 122             {\r
 123                 try {\r
 124                     Annotation target = (Annotation) object;\r
 125                     // if null, use delete method for optional primitives \r
 126                     if (value == null) {\r
 127                         target.deleteGraphType();\r
 128                         return;\r
 129                     }\r
 130                     target.setGraphType( ((java.lang.Integer)value).intValue());\r
 131                 }\r
 132                 catch (java.lang.Exception ex) {\r
 133                     throw new IllegalStateException(ex.toString());\r
 134                 }\r
 135             }\r
 136             public java.lang.Object newInstance( java.lang.Object parent ) {\r
 137                 return null;\r
 138             }\r
 139         } );\r
 140         desc.setHandler(handler);\r
 141         addFieldDescriptor(desc);\r
 142         \r
 143         //-- validation code for: _graphType\r
 144         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 145         { //-- local scope\r
 146             IntegerValidator typeValidator= new IntegerValidator();\r
 147             fieldValidator.setValidator(typeValidator);\r
 148         }\r
 149         desc.setValidator(fieldValidator);\r
 150         //-- _sequenceRef\r
 151         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_sequenceRef", "sequenceRef", org.exolab.castor.xml.NodeType.Attribute);\r
 152         desc.setImmutable(true);\r
 153         handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
 154             public java.lang.Object getValue( java.lang.Object object ) \r
 155                 throws IllegalStateException\r
 156             {\r
 157                 Annotation target = (Annotation) object;\r
 158                 return target.getSequenceRef();\r
 159             }\r
 160             public void setValue( java.lang.Object object, java.lang.Object value) \r
 161                 throws IllegalStateException, IllegalArgumentException\r
 162             {\r
 163                 try {\r
 164                     Annotation target = (Annotation) object;\r
 165                     target.setSequenceRef( (java.lang.String) value);\r
 166                 }\r
 167                 catch (java.lang.Exception ex) {\r
 168                     throw new IllegalStateException(ex.toString());\r
 169                 }\r
 170             }\r
 171             public java.lang.Object newInstance( java.lang.Object parent ) {\r
 172                 return null;\r
 173             }\r
 174         } );\r
 175         desc.setHandler(handler);\r
 176         addFieldDescriptor(desc);\r
 177         \r
 178         //-- validation code for: _sequenceRef\r
 179         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 180         { //-- local scope\r
 181             StringValidator typeValidator = new StringValidator();\r
 182             typeValidator.setWhiteSpace("preserve");\r
 183             fieldValidator.setValidator(typeValidator);\r
 184         }\r
 185         desc.setValidator(fieldValidator);\r
 186         //-- _graphColour\r
 187         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphColour", "graphColour", org.exolab.castor.xml.NodeType.Attribute);\r
 188         handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
 189             public java.lang.Object getValue( java.lang.Object object ) \r
 190                 throws IllegalStateException\r
 191             {\r
 192                 Annotation target = (Annotation) object;\r
 193                 if(!target.hasGraphColour())\r
 194                     return null;\r
 195                 return new java.lang.Integer(target.getGraphColour());\r
 196             }\r
 197             public void setValue( java.lang.Object object, java.lang.Object value) \r
 198                 throws IllegalStateException, IllegalArgumentException\r
 199             {\r
 200                 try {\r
 201                     Annotation target = (Annotation) object;\r
 202                     // if null, use delete method for optional primitives \r
 203                     if (value == null) {\r
 204                         target.deleteGraphColour();\r
 205                         return;\r
 206                     }\r
 207                     target.setGraphColour( ((java.lang.Integer)value).intValue());\r
 208                 }\r
 209                 catch (java.lang.Exception ex) {\r
 210                     throw new IllegalStateException(ex.toString());\r
 211                 }\r
 212             }\r
 213             public java.lang.Object newInstance( java.lang.Object parent ) {\r
 214                 return null;\r
 215             }\r
 216         } );\r
 217         desc.setHandler(handler);\r
 218         addFieldDescriptor(desc);\r
 219         \r
 220         //-- validation code for: _graphColour\r
 221         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 222         { //-- local scope\r
 223             IntegerValidator typeValidator= new IntegerValidator();\r
 224             fieldValidator.setValidator(typeValidator);\r
 225         }\r
 226         desc.setValidator(fieldValidator);\r
 227         //-- _graphGroup\r
 228         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphGroup", "graphGroup", org.exolab.castor.xml.NodeType.Attribute);\r
 229         handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
 230             public java.lang.Object getValue( java.lang.Object object ) \r
 231                 throws IllegalStateException\r
 232             {\r
 233                 Annotation target = (Annotation) object;\r
 234                 if(!target.hasGraphGroup())\r
 235                     return null;\r
 236                 return new java.lang.Integer(target.getGraphGroup());\r
 237             }\r
 238             public void setValue( java.lang.Object object, java.lang.Object value) \r
 239                 throws IllegalStateException, IllegalArgumentException\r
 240             {\r
 241                 try {\r
 242                     Annotation target = (Annotation) object;\r
 243                     // if null, use delete method for optional primitives \r
 244                     if (value == null) {\r
 245                         target.deleteGraphGroup();\r
 246                         return;\r
 247                     }\r
 248                     target.setGraphGroup( ((java.lang.Integer)value).intValue());\r
 249                 }\r
 250                 catch (java.lang.Exception ex) {\r
 251                     throw new IllegalStateException(ex.toString());\r
 252                 }\r
 253             }\r
 254             public java.lang.Object newInstance( java.lang.Object parent ) {\r
 255                 return null;\r
 256             }\r
 257         } );\r
 258         desc.setHandler(handler);\r
 259         addFieldDescriptor(desc);\r
 260         \r
 261         //-- validation code for: _graphGroup\r
 262         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 263         { //-- local scope\r
 264             IntegerValidator typeValidator= new IntegerValidator();\r
 265             fieldValidator.setValidator(typeValidator);\r
 266         }\r
 267         desc.setValidator(fieldValidator);\r
 268         //-- initialize element descriptors\r
 269         \r
 270         //-- _annotationElementList\r
 271         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AnnotationElement.class, "_annotationElementList", "annotationElement", org.exolab.castor.xml.NodeType.Element);\r
 272         handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
 273             public java.lang.Object getValue( java.lang.Object object ) \r
 274                 throws IllegalStateException\r
 275             {\r
 276                 Annotation target = (Annotation) object;\r
 277                 return target.getAnnotationElement();\r
 278             }\r
 279             public void setValue( java.lang.Object object, java.lang.Object value) \r
 280                 throws IllegalStateException, IllegalArgumentException\r
 281             {\r
 282                 try {\r
 283                     Annotation target = (Annotation) object;\r
 284                     target.addAnnotationElement( (jalview.schemabinding.version2.AnnotationElement) value);\r
 285                 }\r
 286                 catch (java.lang.Exception ex) {\r
 287                     throw new IllegalStateException(ex.toString());\r
 288                 }\r
 289             }\r
 290             public java.lang.Object newInstance( java.lang.Object parent ) {\r
 291                 return new jalview.schemabinding.version2.AnnotationElement();\r
 292             }\r
 293         } );\r
 294         desc.setHandler(handler);\r
 295         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 296         desc.setMultivalued(true);\r
 297         addFieldDescriptor(desc);\r
 298         \r
 299         //-- validation code for: _annotationElementList\r
 300         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 301         fieldValidator.setMinOccurs(0);\r
 302         { //-- local scope\r
 303         }\r
 304         desc.setValidator(fieldValidator);\r
 305         //-- _label\r
 306         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_label", "label", org.exolab.castor.xml.NodeType.Element);\r
 307         desc.setImmutable(true);\r
 308         handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
 309             public java.lang.Object getValue( java.lang.Object object ) \r
 310                 throws IllegalStateException\r
 311             {\r
 312                 Annotation target = (Annotation) object;\r
 313                 return target.getLabel();\r
 314             }\r
 315             public void setValue( java.lang.Object object, java.lang.Object value) \r
 316                 throws IllegalStateException, IllegalArgumentException\r
 317             {\r
 318                 try {\r
 319                     Annotation target = (Annotation) object;\r
 320                     target.setLabel( (java.lang.String) value);\r
 321                 }\r
 322                 catch (java.lang.Exception ex) {\r
 323                     throw new IllegalStateException(ex.toString());\r
 324                 }\r
 325             }\r
 326             public java.lang.Object newInstance( java.lang.Object parent ) {\r
 327                 return null;\r
 328             }\r
 329         } );\r
 330         desc.setHandler(handler);\r
 331         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 332         desc.setRequired(true);\r
 333         desc.setMultivalued(false);\r
 334         addFieldDescriptor(desc);\r
 335         \r
 336         //-- validation code for: _label\r
 337         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 338         fieldValidator.setMinOccurs(1);\r
 339         { //-- local scope\r
 340             StringValidator typeValidator = new StringValidator();\r
 341             typeValidator.setWhiteSpace("preserve");\r
 342             fieldValidator.setValidator(typeValidator);\r
 343         }\r
 344         desc.setValidator(fieldValidator);\r
 345         //-- _description\r
 346         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element);\r
 347         desc.setImmutable(true);\r
 348         handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
 349             public java.lang.Object getValue( java.lang.Object object ) \r
 350                 throws IllegalStateException\r
 351             {\r
 352                 Annotation target = (Annotation) object;\r
 353                 return target.getDescription();\r
 354             }\r
 355             public void setValue( java.lang.Object object, java.lang.Object value) \r
 356                 throws IllegalStateException, IllegalArgumentException\r
 357             {\r
 358                 try {\r
 359                     Annotation target = (Annotation) object;\r
 360                     target.setDescription( (java.lang.String) value);\r
 361                 }\r
 362                 catch (java.lang.Exception ex) {\r
 363                     throw new IllegalStateException(ex.toString());\r
 364                 }\r
 365             }\r
 366             public java.lang.Object newInstance( java.lang.Object parent ) {\r
 367                 return null;\r
 368             }\r
 369         } );\r
 370         desc.setHandler(handler);\r
 371         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 372         desc.setMultivalued(false);\r
 373         addFieldDescriptor(desc);\r
 374         \r
 375         //-- validation code for: _description\r
 376         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 377         { //-- local scope\r
 378             StringValidator typeValidator = new StringValidator();\r
 379             typeValidator.setWhiteSpace("preserve");\r
 380             fieldValidator.setValidator(typeValidator);\r
 381         }\r
 382         desc.setValidator(fieldValidator);\r
 383         //-- _thresholdLine\r
 384         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.ThresholdLine.class, "_thresholdLine", "thresholdLine", org.exolab.castor.xml.NodeType.Element);\r
 385         handler = (new org.exolab.castor.xml.XMLFieldHandler() {\r
 386             public java.lang.Object getValue( java.lang.Object object ) \r
 387                 throws IllegalStateException\r
 388             {\r
 389                 Annotation target = (Annotation) object;\r
 390                 return target.getThresholdLine();\r
 391             }\r
 392             public void setValue( java.lang.Object object, java.lang.Object value) \r
 393                 throws IllegalStateException, IllegalArgumentException\r
 394             {\r
 395                 try {\r
 396                     Annotation target = (Annotation) object;\r
 397                     target.setThresholdLine( (jalview.schemabinding.version2.ThresholdLine) value);\r
 398                 }\r
 399                 catch (java.lang.Exception ex) {\r
 400                     throw new IllegalStateException(ex.toString());\r
 401                 }\r
 402             }\r
 403             public java.lang.Object newInstance( java.lang.Object parent ) {\r
 404                 return new jalview.schemabinding.version2.ThresholdLine();\r
 405             }\r
 406         } );\r
 407         desc.setHandler(handler);\r
 408         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");\r
 409         desc.setMultivalued(false);\r
 410         addFieldDescriptor(desc);\r
 411         \r
 412         //-- validation code for: _thresholdLine\r
 413         fieldValidator = new org.exolab.castor.xml.FieldValidator();\r
 414         { //-- local scope\r
 415         }\r
 416         desc.setValidator(fieldValidator);\r
 417     } //-- jalview.schemabinding.version2.AnnotationDescriptor()\r
 418 \r
 419 \r
 420       //-----------/\r
 421      //- Methods -/\r
 422     //-----------/\r
 423 \r
 424     /**\r
 425      * Method getAccessMode\r
 426      * \r
 427      * \r
 428      * \r
 429      * @return AccessMode\r
 430      */\r
 431     public org.exolab.castor.mapping.AccessMode getAccessMode()\r
 432     {\r
 433         return null;\r
 434     } //-- org.exolab.castor.mapping.AccessMode getAccessMode() \r
 435 \r
 436     /**\r
 437      * Method getExtends\r
 438      * \r
 439      * \r
 440      * \r
 441      * @return ClassDescriptor\r
 442      */\r
 443     public org.exolab.castor.mapping.ClassDescriptor getExtends()\r
 444     {\r
 445         return null;\r
 446     } //-- org.exolab.castor.mapping.ClassDescriptor getExtends() \r
 447 \r
 448     /**\r
 449      * Method getIdentity\r
 450      * \r
 451      * \r
 452      * \r
 453      * @return FieldDescriptor\r
 454      */\r
 455     public org.exolab.castor.mapping.FieldDescriptor getIdentity()\r
 456     {\r
 457         return identity;\r
 458     } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity() \r
 459 \r
 460     /**\r
 461      * Method getJavaClass\r
 462      * \r
 463      * \r
 464      * \r
 465      * @return Class\r
 466      */\r
 467     public java.lang.Class getJavaClass()\r
 468     {\r
 469         return jalview.schemabinding.version2.Annotation.class;\r
 470     } //-- java.lang.Class getJavaClass() \r
 471 \r
 472     /**\r
 473      * Method getNameSpacePrefix\r
 474      * \r
 475      * \r
 476      * \r
 477      * @return String\r
 478      */\r
 479     public java.lang.String getNameSpacePrefix()\r
 480     {\r
 481         return nsPrefix;\r
 482     } //-- java.lang.String getNameSpacePrefix() \r
 483 \r
 484     /**\r
 485      * Method getNameSpaceURI\r
 486      * \r
 487      * \r
 488      * \r
 489      * @return String\r
 490      */\r
 491     public java.lang.String getNameSpaceURI()\r
 492     {\r
 493         return nsURI;\r
 494     } //-- java.lang.String getNameSpaceURI() \r
 495 \r
 496     /**\r
 497      * Method getValidator\r
 498      * \r
 499      * \r
 500      * \r
 501      * @return TypeValidator\r
 502      */\r
 503     public org.exolab.castor.xml.TypeValidator getValidator()\r
 504     {\r
 505         return this;\r
 506     } //-- org.exolab.castor.xml.TypeValidator getValidator() \r
 507 \r
 508     /**\r
 509      * Method getXMLName\r
 510      * \r
 511      * \r
 512      * \r
 513      * @return String\r
 514      */\r
 515     public java.lang.String getXMLName()\r
 516     {\r
 517         return xmlName;\r
 518     } //-- java.lang.String getXMLName() \r
 519 \r
 520 }\r