2 * This class was automatically generated with
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3 * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
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8 package jalview.schemabinding.version2;
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10 //---------------------------------/
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11 //- Imported classes and packages -/
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12 //---------------------------------/
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14 import org.exolab.castor.mapping.AccessMode;
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15 import org.exolab.castor.xml.TypeValidator;
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16 import org.exolab.castor.xml.XMLFieldDescriptor;
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17 import org.exolab.castor.xml.validators.*;
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20 * Class AnnotationDescriptor.
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22 * @version $Revision$ $Date$
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24 public class AnnotationDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
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27 //--------------------------/
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28 //- Class/Member Variables -/
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29 //--------------------------/
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34 private java.lang.String nsPrefix;
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39 private java.lang.String nsURI;
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44 private java.lang.String xmlName;
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49 private org.exolab.castor.xml.XMLFieldDescriptor identity;
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56 public AnnotationDescriptor() {
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58 nsURI = "www.vamsas.ac.uk/jalview/version2";
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59 xmlName = "Annotation";
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61 //-- set grouping compositor
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62 setCompositorAsSequence();
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63 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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64 org.exolab.castor.xml.XMLFieldHandler handler = null;
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65 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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66 //-- initialize attribute descriptors
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69 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_graph", "graph", org.exolab.castor.xml.NodeType.Attribute);
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70 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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71 public java.lang.Object getValue( java.lang.Object object )
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72 throws IllegalStateException
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74 Annotation target = (Annotation) object;
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75 if(!target.hasGraph())
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77 return (target.getGraph() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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79 public void setValue( java.lang.Object object, java.lang.Object value)
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80 throws IllegalStateException, IllegalArgumentException
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83 Annotation target = (Annotation) object;
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84 // ignore null values for non optional primitives
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85 if (value == null) return;
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87 target.setGraph( ((java.lang.Boolean)value).booleanValue());
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89 catch (java.lang.Exception ex) {
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90 throw new IllegalStateException(ex.toString());
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93 public java.lang.Object newInstance( java.lang.Object parent ) {
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97 desc.setHandler(handler);
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98 desc.setRequired(true);
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99 addFieldDescriptor(desc);
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101 //-- validation code for: _graph
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102 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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103 fieldValidator.setMinOccurs(1);
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105 BooleanValidator typeValidator = new BooleanValidator();
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106 fieldValidator.setValidator(typeValidator);
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108 desc.setValidator(fieldValidator);
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110 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphType", "graphType", org.exolab.castor.xml.NodeType.Attribute);
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111 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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112 public java.lang.Object getValue( java.lang.Object object )
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113 throws IllegalStateException
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115 Annotation target = (Annotation) object;
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116 if(!target.hasGraphType())
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118 return new java.lang.Integer(target.getGraphType());
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120 public void setValue( java.lang.Object object, java.lang.Object value)
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121 throws IllegalStateException, IllegalArgumentException
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124 Annotation target = (Annotation) object;
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125 // if null, use delete method for optional primitives
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126 if (value == null) {
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127 target.deleteGraphType();
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130 target.setGraphType( ((java.lang.Integer)value).intValue());
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132 catch (java.lang.Exception ex) {
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133 throw new IllegalStateException(ex.toString());
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136 public java.lang.Object newInstance( java.lang.Object parent ) {
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140 desc.setHandler(handler);
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141 addFieldDescriptor(desc);
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143 //-- validation code for: _graphType
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144 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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146 IntegerValidator typeValidator= new IntegerValidator();
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147 fieldValidator.setValidator(typeValidator);
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149 desc.setValidator(fieldValidator);
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151 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_sequenceRef", "sequenceRef", org.exolab.castor.xml.NodeType.Attribute);
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152 desc.setImmutable(true);
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153 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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154 public java.lang.Object getValue( java.lang.Object object )
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155 throws IllegalStateException
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157 Annotation target = (Annotation) object;
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158 return target.getSequenceRef();
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160 public void setValue( java.lang.Object object, java.lang.Object value)
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161 throws IllegalStateException, IllegalArgumentException
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164 Annotation target = (Annotation) object;
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165 target.setSequenceRef( (java.lang.String) value);
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167 catch (java.lang.Exception ex) {
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168 throw new IllegalStateException(ex.toString());
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171 public java.lang.Object newInstance( java.lang.Object parent ) {
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175 desc.setHandler(handler);
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176 addFieldDescriptor(desc);
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178 //-- validation code for: _sequenceRef
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179 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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181 StringValidator typeValidator = new StringValidator();
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182 typeValidator.setWhiteSpace("preserve");
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183 fieldValidator.setValidator(typeValidator);
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185 desc.setValidator(fieldValidator);
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187 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphColour", "graphColour", org.exolab.castor.xml.NodeType.Attribute);
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188 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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189 public java.lang.Object getValue( java.lang.Object object )
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190 throws IllegalStateException
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192 Annotation target = (Annotation) object;
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193 if(!target.hasGraphColour())
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195 return new java.lang.Integer(target.getGraphColour());
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197 public void setValue( java.lang.Object object, java.lang.Object value)
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198 throws IllegalStateException, IllegalArgumentException
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201 Annotation target = (Annotation) object;
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202 // if null, use delete method for optional primitives
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203 if (value == null) {
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204 target.deleteGraphColour();
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207 target.setGraphColour( ((java.lang.Integer)value).intValue());
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209 catch (java.lang.Exception ex) {
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210 throw new IllegalStateException(ex.toString());
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213 public java.lang.Object newInstance( java.lang.Object parent ) {
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217 desc.setHandler(handler);
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218 addFieldDescriptor(desc);
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220 //-- validation code for: _graphColour
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221 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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223 IntegerValidator typeValidator= new IntegerValidator();
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224 fieldValidator.setValidator(typeValidator);
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226 desc.setValidator(fieldValidator);
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228 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphGroup", "graphGroup", org.exolab.castor.xml.NodeType.Attribute);
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229 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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230 public java.lang.Object getValue( java.lang.Object object )
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231 throws IllegalStateException
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233 Annotation target = (Annotation) object;
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234 if(!target.hasGraphGroup())
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236 return new java.lang.Integer(target.getGraphGroup());
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238 public void setValue( java.lang.Object object, java.lang.Object value)
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239 throws IllegalStateException, IllegalArgumentException
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242 Annotation target = (Annotation) object;
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243 // if null, use delete method for optional primitives
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244 if (value == null) {
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245 target.deleteGraphGroup();
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248 target.setGraphGroup( ((java.lang.Integer)value).intValue());
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250 catch (java.lang.Exception ex) {
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251 throw new IllegalStateException(ex.toString());
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254 public java.lang.Object newInstance( java.lang.Object parent ) {
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258 desc.setHandler(handler);
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259 addFieldDescriptor(desc);
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261 //-- validation code for: _graphGroup
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262 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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264 IntegerValidator typeValidator= new IntegerValidator();
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265 fieldValidator.setValidator(typeValidator);
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267 desc.setValidator(fieldValidator);
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269 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
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270 desc.setImmutable(true);
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271 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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272 public java.lang.Object getValue( java.lang.Object object )
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273 throws IllegalStateException
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275 Annotation target = (Annotation) object;
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276 return target.getId();
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278 public void setValue( java.lang.Object object, java.lang.Object value)
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279 throws IllegalStateException, IllegalArgumentException
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282 Annotation target = (Annotation) object;
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283 target.setId( (java.lang.String) value);
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285 catch (java.lang.Exception ex) {
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286 throw new IllegalStateException(ex.toString());
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289 public java.lang.Object newInstance( java.lang.Object parent ) {
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293 desc.setHandler(handler);
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294 addFieldDescriptor(desc);
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296 //-- validation code for: _id
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297 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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299 StringValidator typeValidator = new StringValidator();
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300 typeValidator.setWhiteSpace("preserve");
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301 fieldValidator.setValidator(typeValidator);
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303 desc.setValidator(fieldValidator);
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305 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_scoreOnly", "scoreOnly", org.exolab.castor.xml.NodeType.Attribute);
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306 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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307 public java.lang.Object getValue( java.lang.Object object )
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308 throws IllegalStateException
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310 Annotation target = (Annotation) object;
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311 if(!target.hasScoreOnly())
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313 return (target.getScoreOnly() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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315 public void setValue( java.lang.Object object, java.lang.Object value)
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316 throws IllegalStateException, IllegalArgumentException
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319 Annotation target = (Annotation) object;
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320 // if null, use delete method for optional primitives
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321 if (value == null) {
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322 target.deleteScoreOnly();
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325 target.setScoreOnly( ((java.lang.Boolean)value).booleanValue());
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327 catch (java.lang.Exception ex) {
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328 throw new IllegalStateException(ex.toString());
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331 public java.lang.Object newInstance( java.lang.Object parent ) {
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335 desc.setHandler(handler);
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336 addFieldDescriptor(desc);
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338 //-- validation code for: _scoreOnly
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339 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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341 BooleanValidator typeValidator = new BooleanValidator();
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342 fieldValidator.setValidator(typeValidator);
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344 desc.setValidator(fieldValidator);
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346 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(float.class, "_score", "score", org.exolab.castor.xml.NodeType.Attribute);
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347 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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348 public java.lang.Object getValue( java.lang.Object object )
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349 throws IllegalStateException
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351 Annotation target = (Annotation) object;
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352 if(!target.hasScore())
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354 return new java.lang.Float(target.getScore());
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356 public void setValue( java.lang.Object object, java.lang.Object value)
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357 throws IllegalStateException, IllegalArgumentException
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360 Annotation target = (Annotation) object;
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361 // if null, use delete method for optional primitives
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362 if (value == null) {
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363 target.deleteScore();
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366 target.setScore( ((java.lang.Float)value).floatValue());
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368 catch (java.lang.Exception ex) {
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369 throw new IllegalStateException(ex.toString());
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372 public java.lang.Object newInstance( java.lang.Object parent ) {
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376 desc.setHandler(handler);
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377 addFieldDescriptor(desc);
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379 //-- validation code for: _score
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380 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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382 FloatValidator typeValidator = new FloatValidator();
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383 fieldValidator.setValidator(typeValidator);
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385 desc.setValidator(fieldValidator);
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386 //-- initialize element descriptors
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388 //-- _annotationElementList
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389 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AnnotationElement.class, "_annotationElementList", "annotationElement", org.exolab.castor.xml.NodeType.Element);
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390 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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391 public java.lang.Object getValue( java.lang.Object object )
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392 throws IllegalStateException
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394 Annotation target = (Annotation) object;
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395 return target.getAnnotationElement();
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397 public void setValue( java.lang.Object object, java.lang.Object value)
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398 throws IllegalStateException, IllegalArgumentException
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401 Annotation target = (Annotation) object;
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402 target.addAnnotationElement( (jalview.schemabinding.version2.AnnotationElement) value);
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404 catch (java.lang.Exception ex) {
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405 throw new IllegalStateException(ex.toString());
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408 public java.lang.Object newInstance( java.lang.Object parent ) {
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409 return new jalview.schemabinding.version2.AnnotationElement();
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412 desc.setHandler(handler);
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413 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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414 desc.setMultivalued(true);
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415 addFieldDescriptor(desc);
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417 //-- validation code for: _annotationElementList
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418 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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419 fieldValidator.setMinOccurs(0);
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422 desc.setValidator(fieldValidator);
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424 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_label", "label", org.exolab.castor.xml.NodeType.Element);
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425 desc.setImmutable(true);
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426 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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427 public java.lang.Object getValue( java.lang.Object object )
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428 throws IllegalStateException
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430 Annotation target = (Annotation) object;
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431 return target.getLabel();
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433 public void setValue( java.lang.Object object, java.lang.Object value)
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434 throws IllegalStateException, IllegalArgumentException
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437 Annotation target = (Annotation) object;
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438 target.setLabel( (java.lang.String) value);
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440 catch (java.lang.Exception ex) {
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441 throw new IllegalStateException(ex.toString());
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444 public java.lang.Object newInstance( java.lang.Object parent ) {
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448 desc.setHandler(handler);
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449 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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450 desc.setRequired(true);
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451 desc.setMultivalued(false);
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452 addFieldDescriptor(desc);
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454 //-- validation code for: _label
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455 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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456 fieldValidator.setMinOccurs(1);
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458 StringValidator typeValidator = new StringValidator();
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459 typeValidator.setWhiteSpace("preserve");
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460 fieldValidator.setValidator(typeValidator);
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462 desc.setValidator(fieldValidator);
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464 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element);
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465 desc.setImmutable(true);
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466 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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467 public java.lang.Object getValue( java.lang.Object object )
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468 throws IllegalStateException
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470 Annotation target = (Annotation) object;
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471 return target.getDescription();
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473 public void setValue( java.lang.Object object, java.lang.Object value)
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474 throws IllegalStateException, IllegalArgumentException
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477 Annotation target = (Annotation) object;
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478 target.setDescription( (java.lang.String) value);
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480 catch (java.lang.Exception ex) {
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481 throw new IllegalStateException(ex.toString());
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484 public java.lang.Object newInstance( java.lang.Object parent ) {
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488 desc.setHandler(handler);
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489 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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490 desc.setMultivalued(false);
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491 addFieldDescriptor(desc);
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493 //-- validation code for: _description
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494 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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496 StringValidator typeValidator = new StringValidator();
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497 typeValidator.setWhiteSpace("preserve");
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498 fieldValidator.setValidator(typeValidator);
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500 desc.setValidator(fieldValidator);
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501 //-- _thresholdLine
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502 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.ThresholdLine.class, "_thresholdLine", "thresholdLine", org.exolab.castor.xml.NodeType.Element);
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503 handler = (new org.exolab.castor.xml.XMLFieldHandler() {
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504 public java.lang.Object getValue( java.lang.Object object )
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505 throws IllegalStateException
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507 Annotation target = (Annotation) object;
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508 return target.getThresholdLine();
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510 public void setValue( java.lang.Object object, java.lang.Object value)
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511 throws IllegalStateException, IllegalArgumentException
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514 Annotation target = (Annotation) object;
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515 target.setThresholdLine( (jalview.schemabinding.version2.ThresholdLine) value);
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517 catch (java.lang.Exception ex) {
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518 throw new IllegalStateException(ex.toString());
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521 public java.lang.Object newInstance( java.lang.Object parent ) {
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522 return new jalview.schemabinding.version2.ThresholdLine();
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525 desc.setHandler(handler);
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526 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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527 desc.setMultivalued(false);
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528 addFieldDescriptor(desc);
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530 //-- validation code for: _thresholdLine
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531 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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534 desc.setValidator(fieldValidator);
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535 } //-- jalview.schemabinding.version2.AnnotationDescriptor()
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543 * Method getAccessMode
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547 * @return AccessMode
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549 public org.exolab.castor.mapping.AccessMode getAccessMode()
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552 } //-- org.exolab.castor.mapping.AccessMode getAccessMode()
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555 * Method getExtends
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559 * @return ClassDescriptor
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561 public org.exolab.castor.mapping.ClassDescriptor getExtends()
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564 } //-- org.exolab.castor.mapping.ClassDescriptor getExtends()
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567 * Method getIdentity
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571 * @return FieldDescriptor
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573 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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576 } //-- org.exolab.castor.mapping.FieldDescriptor getIdentity()
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579 * Method getJavaClass
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585 public java.lang.Class getJavaClass()
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587 return jalview.schemabinding.version2.Annotation.class;
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588 } //-- java.lang.Class getJavaClass()
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591 * Method getNameSpacePrefix
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597 public java.lang.String getNameSpacePrefix()
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600 } //-- java.lang.String getNameSpacePrefix()
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603 * Method getNameSpaceURI
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609 public java.lang.String getNameSpaceURI()
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612 } //-- java.lang.String getNameSpaceURI()
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615 * Method getValidator
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619 * @return TypeValidator
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621 public org.exolab.castor.xml.TypeValidator getValidator()
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624 } //-- org.exolab.castor.xml.TypeValidator getValidator()
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627 * Method getXMLName
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633 public java.lang.String getXMLName()
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636 } //-- java.lang.String getXMLName()
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