2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
3 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.schemabinding.version2;
20 //---------------------------------/
21 //- Imported classes and packages -/
22 //---------------------------------/
24 import org.exolab.castor.xml.Marshaller;
25 import org.exolab.castor.xml.Unmarshaller;
28 * Class MappingChoice.
30 * @version $Revision$ $Date$
32 public class MappingChoice implements java.io.Serializable
35 // --------------------------/
36 // - Class/Member Variables -/
37 // --------------------------/
42 private jalview.schemabinding.version2.Sequence _sequence;
47 private java.lang.String _dseqFor;
53 public MappingChoice()
63 * Returns the value of field 'dseqFor'.
65 * @return the value of field 'DseqFor'.
67 public java.lang.String getDseqFor()
73 * Returns the value of field 'sequence'.
75 * @return the value of field 'Sequence'.
77 public jalview.schemabinding.version2.Sequence getSequence()
79 return this._sequence;
85 * @return true if this object is valid according to the schema
87 public boolean isValid()
92 } catch (org.exolab.castor.xml.ValidationException vex)
103 * @throws org.exolab.castor.xml.MarshalException
104 * if object is null or if any SAXException is thrown during
106 * @throws org.exolab.castor.xml.ValidationException
107 * if this object is an invalid instance according to the schema
109 public void marshal(final java.io.Writer out)
110 throws org.exolab.castor.xml.MarshalException,
111 org.exolab.castor.xml.ValidationException
113 Marshaller.marshal(this, out);
120 * @throws java.io.IOException
121 * if an IOException occurs during marshaling
122 * @throws org.exolab.castor.xml.ValidationException
123 * if this object is an invalid instance according to the schema
124 * @throws org.exolab.castor.xml.MarshalException
125 * if object is null or if any SAXException is thrown during
128 public void marshal(final org.xml.sax.ContentHandler handler)
129 throws java.io.IOException,
130 org.exolab.castor.xml.MarshalException,
131 org.exolab.castor.xml.ValidationException
133 Marshaller.marshal(this, handler);
137 * Sets the value of field 'dseqFor'.
140 * the value of field 'dseqFor'.
142 public void setDseqFor(final java.lang.String dseqFor)
144 this._dseqFor = dseqFor;
148 * Sets the value of field 'sequence'.
151 * the value of field 'sequence'.
153 public void setSequence(
154 final jalview.schemabinding.version2.Sequence sequence)
156 this._sequence = sequence;
163 * @throws org.exolab.castor.xml.MarshalException
164 * if object is null or if any SAXException is thrown during
166 * @throws org.exolab.castor.xml.ValidationException
167 * if this object is an invalid instance according to the schema
168 * @return the unmarshaled jalview.schemabinding.version2.MappingChoice
170 public static jalview.schemabinding.version2.MappingChoice unmarshal(
171 final java.io.Reader reader)
172 throws org.exolab.castor.xml.MarshalException,
173 org.exolab.castor.xml.ValidationException
175 return (jalview.schemabinding.version2.MappingChoice) Unmarshaller
176 .unmarshal(jalview.schemabinding.version2.MappingChoice.class,
183 * @throws org.exolab.castor.xml.ValidationException
184 * if this object is an invalid instance according to the schema
186 public void validate() throws org.exolab.castor.xml.ValidationException
188 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
189 validator.validate(this);