2 * This class was automatically generated with
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3 * <a href="http://www.castor.org">Castor 0.9.6</a>, using an XML
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8 package jalview.schemabinding.version2;
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10 //---------------------------------/
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11 //- Imported classes and packages -/
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12 //---------------------------------/
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14 import java.io.IOException;
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15 import java.io.Reader;
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16 import java.io.Serializable;
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17 import java.io.Writer;
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18 import java.util.Enumeration;
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19 import java.util.Vector;
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20 import org.exolab.castor.xml.MarshalException;
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21 import org.exolab.castor.xml.Marshaller;
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22 import org.exolab.castor.xml.Unmarshaller;
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23 import org.exolab.castor.xml.ValidationException;
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24 import org.xml.sax.ContentHandler;
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29 * @version $Revision$ $Date$
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31 public class Sequence extends jalview.schemabinding.version2.SequenceType
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32 implements java.io.Serializable
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36 //--------------------------/
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37 //- Class/Member Variables -/
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38 //--------------------------/
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43 private java.util.Vector _DBRefList;
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52 _DBRefList = new Vector();
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53 } //-- jalview.schemabinding.version2.Sequence()
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67 public void addDBRef(jalview.schemabinding.version2.DBRef vDBRef)
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68 throws java.lang.IndexOutOfBoundsException
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70 _DBRefList.addElement(vDBRef);
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71 } //-- void addDBRef(jalview.schemabinding.version2.DBRef)
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81 public void addDBRef(int index, jalview.schemabinding.version2.DBRef vDBRef)
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82 throws java.lang.IndexOutOfBoundsException
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84 _DBRefList.insertElementAt(vDBRef, index);
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85 } //-- void addDBRef(int, jalview.schemabinding.version2.DBRef)
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88 * Method enumerateDBRef
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92 * @return Enumeration
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94 public java.util.Enumeration enumerateDBRef()
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96 return _DBRefList.elements();
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97 } //-- java.util.Enumeration enumerateDBRef()
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107 public jalview.schemabinding.version2.DBRef getDBRef(int index)
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108 throws java.lang.IndexOutOfBoundsException
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110 //-- check bounds for index
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111 if ((index < 0) || (index > _DBRefList.size())) {
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112 throw new IndexOutOfBoundsException();
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115 return (jalview.schemabinding.version2.DBRef) _DBRefList.elementAt(index);
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116 } //-- jalview.schemabinding.version2.DBRef getDBRef(int)
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125 public jalview.schemabinding.version2.DBRef[] getDBRef()
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127 int size = _DBRefList.size();
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128 jalview.schemabinding.version2.DBRef[] mArray = new jalview.schemabinding.version2.DBRef[size];
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129 for (int index = 0; index < size; index++) {
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130 mArray[index] = (jalview.schemabinding.version2.DBRef) _DBRefList.elementAt(index);
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133 } //-- jalview.schemabinding.version2.DBRef[] getDBRef()
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136 * Method getDBRefCount
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142 public int getDBRefCount()
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144 return _DBRefList.size();
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145 } //-- int getDBRefCount()
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154 public boolean isValid()
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159 catch (org.exolab.castor.xml.ValidationException vex) {
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163 } //-- boolean isValid()
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172 public void marshal(java.io.Writer out)
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173 throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
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176 Marshaller.marshal(this, out);
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177 } //-- void marshal(java.io.Writer)
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186 public void marshal(org.xml.sax.ContentHandler handler)
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187 throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
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190 Marshaller.marshal(this, handler);
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191 } //-- void marshal(org.xml.sax.ContentHandler)
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194 * Method removeAllDBRef
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197 public void removeAllDBRef()
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199 _DBRefList.removeAllElements();
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200 } //-- void removeAllDBRef()
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203 * Method removeDBRef
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210 public jalview.schemabinding.version2.DBRef removeDBRef(int index)
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212 java.lang.Object obj = _DBRefList.elementAt(index);
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213 _DBRefList.removeElementAt(index);
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214 return (jalview.schemabinding.version2.DBRef) obj;
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215 } //-- jalview.schemabinding.version2.DBRef removeDBRef(int)
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225 public void setDBRef(int index, jalview.schemabinding.version2.DBRef vDBRef)
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226 throws java.lang.IndexOutOfBoundsException
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228 //-- check bounds for index
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229 if ((index < 0) || (index > _DBRefList.size())) {
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230 throw new IndexOutOfBoundsException();
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232 _DBRefList.setElementAt(vDBRef, index);
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233 } //-- void setDBRef(int, jalview.schemabinding.version2.DBRef)
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240 * @param DBRefArray
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242 public void setDBRef(jalview.schemabinding.version2.DBRef[] DBRefArray)
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245 _DBRefList.removeAllElements();
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246 for (int i = 0; i < DBRefArray.length; i++) {
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247 _DBRefList.addElement(DBRefArray[i]);
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249 } //-- void setDBRef(jalview.schemabinding.version2.DBRef)
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259 public static java.lang.Object unmarshal(java.io.Reader reader)
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260 throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException
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262 return (jalview.schemabinding.version2.Sequence) Unmarshaller.unmarshal(jalview.schemabinding.version2.Sequence.class, reader);
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263 } //-- java.lang.Object unmarshal(java.io.Reader)
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269 public void validate()
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270 throws org.exolab.castor.xml.ValidationException
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272 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
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273 validator.validate(this);
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274 } //-- void validate()
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