2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
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3 * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.schemabinding.version2;
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21 // ---------------------------------/
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22 // - Imported classes and packages -/
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23 // ---------------------------------/
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25 import org.exolab.castor.xml.Marshaller;
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26 import org.exolab.castor.xml.Unmarshaller;
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29 * Class SequenceType.
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31 * @version $Revision$ $Date$
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33 public class SequenceType implements java.io.Serializable
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36 // --------------------------/
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37 // - Class/Member Variables -/
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38 // --------------------------/
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43 private java.lang.String _id;
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46 * Field _description.
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48 private java.lang.String _description;
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53 private java.lang.String _sequence;
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58 private java.lang.String _name;
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60 // ----------------/
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61 // - Constructors -/
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62 // ----------------/
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64 public SequenceType()
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74 * Returns the value of field 'description'.
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76 * @return the value of field 'Description'.
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78 public java.lang.String getDescription()
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80 return this._description;
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84 * Returns the value of field 'id'.
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86 * @return the value of field 'Id'.
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88 public java.lang.String getId()
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94 * Returns the value of field 'name'.
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96 * @return the value of field 'Name'.
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98 public java.lang.String getName()
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104 * Returns the value of field 'sequence'.
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106 * @return the value of field 'Sequence'.
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108 public java.lang.String getSequence()
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110 return this._sequence;
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116 * @return true if this object is valid according to the schema
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118 public boolean isValid()
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123 } catch (org.exolab.castor.xml.ValidationException vex)
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134 * @throws org.exolab.castor.xml.MarshalException
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135 * if object is null or if any SAXException is thrown during
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137 * @throws org.exolab.castor.xml.ValidationException
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138 * if this object is an invalid instance according to the
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141 public void marshal(final java.io.Writer out)
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142 throws org.exolab.castor.xml.MarshalException,
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143 org.exolab.castor.xml.ValidationException
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145 Marshaller.marshal(this, out);
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152 * @throws java.io.IOException
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153 * if an IOException occurs during marshaling
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154 * @throws org.exolab.castor.xml.ValidationException
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155 * if this object is an invalid instance according to the
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157 * @throws org.exolab.castor.xml.MarshalException
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158 * if object is null or if any SAXException is thrown during
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161 public void marshal(final org.xml.sax.ContentHandler handler)
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162 throws java.io.IOException,
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163 org.exolab.castor.xml.MarshalException,
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164 org.exolab.castor.xml.ValidationException
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166 Marshaller.marshal(this, handler);
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170 * Sets the value of field 'description'.
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172 * @param description
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173 * the value of field 'description'.
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175 public void setDescription(final java.lang.String description)
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177 this._description = description;
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181 * Sets the value of field 'id'.
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184 * the value of field 'id'.
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186 public void setId(final java.lang.String id)
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192 * Sets the value of field 'name'.
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195 * the value of field 'name'.
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197 public void setName(final java.lang.String name)
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203 * Sets the value of field 'sequence'.
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206 * the value of field 'sequence'.
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208 public void setSequence(final java.lang.String sequence)
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210 this._sequence = sequence;
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214 * Method unmarshal.
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217 * @throws org.exolab.castor.xml.MarshalException
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218 * if object is null or if any SAXException is thrown during
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220 * @throws org.exolab.castor.xml.ValidationException
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221 * if this object is an invalid instance according to the
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223 * @return the unmarshaled jalview.schemabinding.version2.SequenceType
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225 public static jalview.schemabinding.version2.SequenceType unmarshal(
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226 final java.io.Reader reader)
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227 throws org.exolab.castor.xml.MarshalException,
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228 org.exolab.castor.xml.ValidationException
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230 return (jalview.schemabinding.version2.SequenceType) Unmarshaller
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231 .unmarshal(jalview.schemabinding.version2.SequenceType.class,
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238 * @throws org.exolab.castor.xml.ValidationException
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239 * if this object is an invalid instance according to the
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242 public void validate() throws org.exolab.castor.xml.ValidationException
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244 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
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245 validator.validate(this);
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