2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
\r
3 * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
5 * This program is free software; you can redistribute it and/or
\r
6 * modify it under the terms of the GNU General Public License
\r
7 * as published by the Free Software Foundation; either version 2
\r
8 * of the License, or (at your option) any later version.
\r
10 * This program is distributed in the hope that it will be useful,
\r
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
\r
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
\r
13 * GNU General Public License for more details.
\r
15 * You should have received a copy of the GNU General Public License
\r
16 * along with this program; if not, write to the Free Software
\r
17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
\r
19 package jalview.schemabinding.version2;
\r
21 //---------------------------------/
\r
22 //- Imported classes and packages -/
\r
23 //---------------------------------/
\r
25 import org.exolab.castor.xml.Marshaller;
\r
26 import org.exolab.castor.xml.Unmarshaller;
\r
29 * Class SequenceType.
\r
31 * @version $Revision$ $Date$
\r
33 public class SequenceType implements java.io.Serializable {
\r
36 //--------------------------/
\r
37 //- Class/Member Variables -/
\r
38 //--------------------------/
\r
43 private java.lang.String _id;
\r
46 * Field _description.
\r
48 private java.lang.String _description;
\r
53 private java.lang.String _sequence;
\r
58 private java.lang.String _name;
\r
65 public SequenceType() {
\r
75 * Returns the value of field 'description'.
\r
77 * @return the value of field 'Description'.
\r
79 public java.lang.String getDescription(
\r
81 return this._description;
\r
85 * Returns the value of field 'id'.
\r
87 * @return the value of field 'Id'.
\r
89 public java.lang.String getId(
\r
95 * Returns the value of field 'name'.
\r
97 * @return the value of field 'Name'.
\r
99 public java.lang.String getName(
\r
105 * Returns the value of field 'sequence'.
\r
107 * @return the value of field 'Sequence'.
\r
109 public java.lang.String getSequence(
\r
111 return this._sequence;
\r
117 * @return true if this object is valid according to the schema
\r
119 public boolean isValid(
\r
123 } catch (org.exolab.castor.xml.ValidationException vex) {
\r
133 * @throws org.exolab.castor.xml.MarshalException if object is
\r
134 * null or if any SAXException is thrown during marshaling
\r
135 * @throws org.exolab.castor.xml.ValidationException if this
\r
136 * object is an invalid instance according to the schema
\r
138 public void marshal(
\r
139 final java.io.Writer out)
\r
140 throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
\r
141 Marshaller.marshal(this, out);
\r
148 * @throws java.io.IOException if an IOException occurs during
\r
150 * @throws org.exolab.castor.xml.ValidationException if this
\r
151 * object is an invalid instance according to the schema
\r
152 * @throws org.exolab.castor.xml.MarshalException if object is
\r
153 * null or if any SAXException is thrown during marshaling
\r
155 public void marshal(
\r
156 final org.xml.sax.ContentHandler handler)
\r
157 throws java.io.IOException, org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
\r
158 Marshaller.marshal(this, handler);
\r
162 * Sets the value of field 'description'.
\r
164 * @param description the value of field 'description'.
\r
166 public void setDescription(
\r
167 final java.lang.String description) {
\r
168 this._description = description;
\r
172 * Sets the value of field 'id'.
\r
174 * @param id the value of field 'id'.
\r
177 final java.lang.String id) {
\r
182 * Sets the value of field 'name'.
\r
184 * @param name the value of field 'name'.
\r
186 public void setName(
\r
187 final java.lang.String name) {
\r
192 * Sets the value of field 'sequence'.
\r
194 * @param sequence the value of field 'sequence'.
\r
196 public void setSequence(
\r
197 final java.lang.String sequence) {
\r
198 this._sequence = sequence;
\r
202 * Method unmarshal.
\r
205 * @throws org.exolab.castor.xml.MarshalException if object is
\r
206 * null or if any SAXException is thrown during marshaling
\r
207 * @throws org.exolab.castor.xml.ValidationException if this
\r
208 * object is an invalid instance according to the schema
\r
209 * @return the unmarshaled
\r
210 * jalview.schemabinding.version2.SequenceType
\r
212 public static jalview.schemabinding.version2.SequenceType unmarshal(
\r
213 final java.io.Reader reader)
\r
214 throws org.exolab.castor.xml.MarshalException, org.exolab.castor.xml.ValidationException {
\r
215 return (jalview.schemabinding.version2.SequenceType) Unmarshaller.unmarshal(jalview.schemabinding.version2.SequenceType.class, reader);
\r
221 * @throws org.exolab.castor.xml.ValidationException if this
\r
222 * object is an invalid instance according to the schema
\r
224 public void validate(
\r
226 throws org.exolab.castor.xml.ValidationException {
\r
227 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
\r
228 validator.validate(this);
\r