2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
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3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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5 * This file is part of Jalview.
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7 * Jalview is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License
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9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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11 * Jalview is distributed in the hope that it will be useful, but
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12 * WITHOUT ANY WARRANTY; without even the implied warranty
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13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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14 * PURPOSE. See the GNU General Public License for more details.
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16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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18 package jalview.schemabinding.version2;
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20 //---------------------------------/
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21 //- Imported classes and packages -/
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22 //---------------------------------/
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24 import org.exolab.castor.xml.Marshaller;
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25 import org.exolab.castor.xml.Unmarshaller;
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28 * Class SequenceType.
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30 * @version $Revision$ $Date$
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32 public class SequenceType implements java.io.Serializable
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35 // --------------------------/
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36 // - Class/Member Variables -/
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37 // --------------------------/
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42 private java.lang.String _id;
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45 * Field _description.
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47 private java.lang.String _description;
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52 private java.lang.String _sequence;
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57 private java.lang.String _name;
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59 // ----------------/
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60 // - Constructors -/
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61 // ----------------/
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63 public SequenceType()
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73 * Returns the value of field 'description'.
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75 * @return the value of field 'Description'.
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77 public java.lang.String getDescription()
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79 return this._description;
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83 * Returns the value of field 'id'.
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85 * @return the value of field 'Id'.
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87 public java.lang.String getId()
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93 * Returns the value of field 'name'.
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95 * @return the value of field 'Name'.
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97 public java.lang.String getName()
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103 * Returns the value of field 'sequence'.
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105 * @return the value of field 'Sequence'.
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107 public java.lang.String getSequence()
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109 return this._sequence;
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115 * @return true if this object is valid according to the schema
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117 public boolean isValid()
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122 } catch (org.exolab.castor.xml.ValidationException vex)
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133 * @throws org.exolab.castor.xml.MarshalException
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134 * if object is null or if any SAXException is thrown during
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136 * @throws org.exolab.castor.xml.ValidationException
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137 * if this object is an invalid instance according to the schema
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139 public void marshal(final java.io.Writer out)
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140 throws org.exolab.castor.xml.MarshalException,
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141 org.exolab.castor.xml.ValidationException
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143 Marshaller.marshal(this, out);
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150 * @throws java.io.IOException
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151 * if an IOException occurs during marshaling
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152 * @throws org.exolab.castor.xml.ValidationException
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153 * if this object is an invalid instance according to the schema
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154 * @throws org.exolab.castor.xml.MarshalException
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155 * if object is null or if any SAXException is thrown during
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158 public void marshal(final org.xml.sax.ContentHandler handler)
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159 throws java.io.IOException,
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160 org.exolab.castor.xml.MarshalException,
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161 org.exolab.castor.xml.ValidationException
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163 Marshaller.marshal(this, handler);
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167 * Sets the value of field 'description'.
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169 * @param description
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170 * the value of field 'description'.
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172 public void setDescription(final java.lang.String description)
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174 this._description = description;
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178 * Sets the value of field 'id'.
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181 * the value of field 'id'.
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183 public void setId(final java.lang.String id)
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189 * Sets the value of field 'name'.
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192 * the value of field 'name'.
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194 public void setName(final java.lang.String name)
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200 * Sets the value of field 'sequence'.
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203 * the value of field 'sequence'.
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205 public void setSequence(final java.lang.String sequence)
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207 this._sequence = sequence;
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211 * Method unmarshal.
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214 * @throws org.exolab.castor.xml.MarshalException
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215 * if object is null or if any SAXException is thrown during
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217 * @throws org.exolab.castor.xml.ValidationException
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218 * if this object is an invalid instance according to the schema
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219 * @return the unmarshaled jalview.schemabinding.version2.SequenceType
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221 public static jalview.schemabinding.version2.SequenceType unmarshal(
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222 final java.io.Reader reader)
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223 throws org.exolab.castor.xml.MarshalException,
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224 org.exolab.castor.xml.ValidationException
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226 return (jalview.schemabinding.version2.SequenceType) Unmarshaller
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227 .unmarshal(jalview.schemabinding.version2.SequenceType.class,
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234 * @throws org.exolab.castor.xml.ValidationException
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235 * if this object is an invalid instance according to the schema
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237 public void validate() throws org.exolab.castor.xml.ValidationException
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239 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
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240 validator.validate(this);
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