2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
3 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.schemabinding.version2;
20 //---------------------------------/
21 //- Imported classes and packages -/
22 //---------------------------------/
24 import org.exolab.castor.xml.Marshaller;
25 import org.exolab.castor.xml.Unmarshaller;
30 * @version $Revision$ $Date$
32 public class SequenceType implements java.io.Serializable
35 // --------------------------/
36 // - Class/Member Variables -/
37 // --------------------------/
42 private java.lang.String _id;
47 private java.lang.String _description;
52 private java.lang.String _sequence;
57 private java.lang.String _name;
73 * Returns the value of field 'description'.
75 * @return the value of field 'Description'.
77 public java.lang.String getDescription()
79 return this._description;
83 * Returns the value of field 'id'.
85 * @return the value of field 'Id'.
87 public java.lang.String getId()
93 * Returns the value of field 'name'.
95 * @return the value of field 'Name'.
97 public java.lang.String getName()
103 * Returns the value of field 'sequence'.
105 * @return the value of field 'Sequence'.
107 public java.lang.String getSequence()
109 return this._sequence;
115 * @return true if this object is valid according to the schema
117 public boolean isValid()
122 } catch (org.exolab.castor.xml.ValidationException vex)
133 * @throws org.exolab.castor.xml.MarshalException
134 * if object is null or if any SAXException is thrown during
136 * @throws org.exolab.castor.xml.ValidationException
137 * if this object is an invalid instance according to the schema
139 public void marshal(final java.io.Writer out)
140 throws org.exolab.castor.xml.MarshalException,
141 org.exolab.castor.xml.ValidationException
143 Marshaller.marshal(this, out);
150 * @throws java.io.IOException
151 * if an IOException occurs during marshaling
152 * @throws org.exolab.castor.xml.ValidationException
153 * if this object is an invalid instance according to the schema
154 * @throws org.exolab.castor.xml.MarshalException
155 * if object is null or if any SAXException is thrown during
158 public void marshal(final org.xml.sax.ContentHandler handler)
159 throws java.io.IOException,
160 org.exolab.castor.xml.MarshalException,
161 org.exolab.castor.xml.ValidationException
163 Marshaller.marshal(this, handler);
167 * Sets the value of field 'description'.
170 * the value of field 'description'.
172 public void setDescription(final java.lang.String description)
174 this._description = description;
178 * Sets the value of field 'id'.
181 * the value of field 'id'.
183 public void setId(final java.lang.String id)
189 * Sets the value of field 'name'.
192 * the value of field 'name'.
194 public void setName(final java.lang.String name)
200 * Sets the value of field 'sequence'.
203 * the value of field 'sequence'.
205 public void setSequence(final java.lang.String sequence)
207 this._sequence = sequence;
214 * @throws org.exolab.castor.xml.MarshalException
215 * if object is null or if any SAXException is thrown during
217 * @throws org.exolab.castor.xml.ValidationException
218 * if this object is an invalid instance according to the schema
219 * @return the unmarshaled jalview.schemabinding.version2.SequenceType
221 public static jalview.schemabinding.version2.SequenceType unmarshal(
222 final java.io.Reader reader)
223 throws org.exolab.castor.xml.MarshalException,
224 org.exolab.castor.xml.ValidationException
226 return (jalview.schemabinding.version2.SequenceType) Unmarshaller
227 .unmarshal(jalview.schemabinding.version2.SequenceType.class,
234 * @throws org.exolab.castor.xml.ValidationException
235 * if this object is an invalid instance according to the schema
237 public void validate() throws org.exolab.castor.xml.ValidationException
239 org.exolab.castor.xml.Validator validator = new org.exolab.castor.xml.Validator();
240 validator.validate(this);