2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
3 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.schemabinding.version2.descriptors;
20 //---------------------------------/
21 //- Imported classes and packages -/
22 //---------------------------------/
24 import jalview.schemabinding.version2.AlcodonFrame;
27 * Class AlcodonFrameDescriptor.
29 * @version $Revision$ $Date$
31 public class AlcodonFrameDescriptor extends
32 org.exolab.castor.xml.util.XMLClassDescriptorImpl
35 // --------------------------/
36 // - Class/Member Variables -/
37 // --------------------------/
40 * Field _elementDefinition.
42 private boolean _elementDefinition;
47 private java.lang.String _nsPrefix;
52 private java.lang.String _nsURI;
57 private java.lang.String _xmlName;
63 public AlcodonFrameDescriptor()
66 _nsURI = "www.vamsas.ac.uk/jalview/version2";
67 _xmlName = "AlcodonFrame";
68 _elementDefinition = true;
70 // -- set grouping compositor
71 setCompositorAsSequence();
72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
73 org.exolab.castor.mapping.FieldHandler handler = null;
74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
75 // -- initialize attribute descriptors
77 // -- initialize element descriptors
80 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
81 jalview.schemabinding.version2.Alcodon.class, "_alcodonList",
82 "alcodon", org.exolab.castor.xml.NodeType.Element);
83 handler = new org.exolab.castor.xml.XMLFieldHandler()
85 public java.lang.Object getValue(java.lang.Object object)
86 throws IllegalStateException
88 AlcodonFrame target = (AlcodonFrame) object;
89 return target.getAlcodon();
92 public void setValue(java.lang.Object object, java.lang.Object value)
93 throws IllegalStateException, IllegalArgumentException
97 AlcodonFrame target = (AlcodonFrame) object;
98 target.addAlcodon((jalview.schemabinding.version2.Alcodon) value);
99 } catch (java.lang.Exception ex)
101 throw new IllegalStateException(ex.toString());
105 public void resetValue(Object object) throws IllegalStateException,
106 IllegalArgumentException
110 AlcodonFrame target = (AlcodonFrame) object;
111 target.removeAllAlcodon();
112 } catch (java.lang.Exception ex)
114 throw new IllegalStateException(ex.toString());
118 public java.lang.Object newInstance(java.lang.Object parent)
120 return new jalview.schemabinding.version2.Alcodon();
123 desc.setHandler(handler);
124 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
125 desc.setMultivalued(true);
126 addFieldDescriptor(desc);
128 // -- validation code for: _alcodonList
129 fieldValidator = new org.exolab.castor.xml.FieldValidator();
130 fieldValidator.setMinOccurs(0);
133 desc.setValidator(fieldValidator);
135 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
136 jalview.schemabinding.version2.AlcodMap.class, "_alcodMapList",
137 "alcodMap", org.exolab.castor.xml.NodeType.Element);
138 handler = new org.exolab.castor.xml.XMLFieldHandler()
140 public java.lang.Object getValue(java.lang.Object object)
141 throws IllegalStateException
143 AlcodonFrame target = (AlcodonFrame) object;
144 return target.getAlcodMap();
147 public void setValue(java.lang.Object object, java.lang.Object value)
148 throws IllegalStateException, IllegalArgumentException
152 AlcodonFrame target = (AlcodonFrame) object;
153 target.addAlcodMap((jalview.schemabinding.version2.AlcodMap) value);
154 } catch (java.lang.Exception ex)
156 throw new IllegalStateException(ex.toString());
160 public void resetValue(Object object) throws IllegalStateException,
161 IllegalArgumentException
165 AlcodonFrame target = (AlcodonFrame) object;
166 target.removeAllAlcodMap();
167 } catch (java.lang.Exception ex)
169 throw new IllegalStateException(ex.toString());
173 public java.lang.Object newInstance(java.lang.Object parent)
175 return new jalview.schemabinding.version2.AlcodMap();
178 desc.setHandler(handler);
179 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
180 desc.setMultivalued(true);
181 addFieldDescriptor(desc);
183 // -- validation code for: _alcodMapList
184 fieldValidator = new org.exolab.castor.xml.FieldValidator();
185 fieldValidator.setMinOccurs(0);
188 desc.setValidator(fieldValidator);
196 * Method getAccessMode.
198 * @return the access mode specified for this class.
200 public org.exolab.castor.mapping.AccessMode getAccessMode()
206 * Method getIdentity.
208 * @return the identity field, null if this class has no identity.
210 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
212 return super.getIdentity();
216 * Method getJavaClass.
218 * @return the Java class represented by this descriptor.
220 public java.lang.Class getJavaClass()
222 return jalview.schemabinding.version2.AlcodonFrame.class;
226 * Method getNameSpacePrefix.
228 * @return the namespace prefix to use when marshaling as XML.
230 public java.lang.String getNameSpacePrefix()
236 * Method getNameSpaceURI.
238 * @return the namespace URI used when marshaling and unmarshaling as XML.
240 public java.lang.String getNameSpaceURI()
246 * Method getValidator.
248 * @return a specific validator for the class described by this
251 public org.exolab.castor.xml.TypeValidator getValidator()
259 * @return the XML Name for the Class being described.
261 public java.lang.String getXMLName()
267 * Method isElementDefinition.
269 * @return true if XML schema definition of this Class is that of a global
270 * element or element with anonymous type definition.
272 public boolean isElementDefinition()
274 return _elementDefinition;