2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
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3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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5 * This file is part of Jalview.
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7 * Jalview is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License
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9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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11 * Jalview is distributed in the hope that it will be useful, but
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12 * WITHOUT ANY WARRANTY; without even the implied warranty
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13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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14 * PURPOSE. See the GNU General Public License for more details.
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16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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18 package jalview.schemabinding.version2.descriptors;
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20 //---------------------------------/
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21 //- Imported classes and packages -/
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22 //---------------------------------/
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24 import jalview.schemabinding.version2.AlcodonFrame;
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27 * Class AlcodonFrameDescriptor.
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29 * @version $Revision$ $Date$
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31 public class AlcodonFrameDescriptor extends
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32 org.exolab.castor.xml.util.XMLClassDescriptorImpl
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35 // --------------------------/
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36 // - Class/Member Variables -/
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37 // --------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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59 // ----------------/
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60 // - Constructors -/
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61 // ----------------/
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63 public AlcodonFrameDescriptor()
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66 _nsURI = "www.vamsas.ac.uk/jalview/version2";
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67 _xmlName = "AlcodonFrame";
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68 _elementDefinition = true;
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70 // -- set grouping compositor
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71 setCompositorAsSequence();
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 // -- initialize attribute descriptors
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77 // -- initialize element descriptors
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80 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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81 jalview.schemabinding.version2.Alcodon.class, "_alcodonList",
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82 "alcodon", org.exolab.castor.xml.NodeType.Element);
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83 handler = new org.exolab.castor.xml.XMLFieldHandler()
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85 public java.lang.Object getValue(java.lang.Object object)
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86 throws IllegalStateException
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88 AlcodonFrame target = (AlcodonFrame) object;
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89 return target.getAlcodon();
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92 public void setValue(java.lang.Object object, java.lang.Object value)
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93 throws IllegalStateException, IllegalArgumentException
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97 AlcodonFrame target = (AlcodonFrame) object;
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98 target.addAlcodon((jalview.schemabinding.version2.Alcodon) value);
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99 } catch (java.lang.Exception ex)
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101 throw new IllegalStateException(ex.toString());
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105 public void resetValue(Object object) throws IllegalStateException,
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106 IllegalArgumentException
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110 AlcodonFrame target = (AlcodonFrame) object;
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111 target.removeAllAlcodon();
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112 } catch (java.lang.Exception ex)
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114 throw new IllegalStateException(ex.toString());
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118 public java.lang.Object newInstance(java.lang.Object parent)
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120 return new jalview.schemabinding.version2.Alcodon();
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123 desc.setHandler(handler);
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124 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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125 desc.setMultivalued(true);
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126 addFieldDescriptor(desc);
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128 // -- validation code for: _alcodonList
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129 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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130 fieldValidator.setMinOccurs(0);
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131 { // -- local scope
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133 desc.setValidator(fieldValidator);
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134 // -- _alcodMapList
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135 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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136 jalview.schemabinding.version2.AlcodMap.class, "_alcodMapList",
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137 "alcodMap", org.exolab.castor.xml.NodeType.Element);
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138 handler = new org.exolab.castor.xml.XMLFieldHandler()
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140 public java.lang.Object getValue(java.lang.Object object)
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141 throws IllegalStateException
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143 AlcodonFrame target = (AlcodonFrame) object;
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144 return target.getAlcodMap();
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147 public void setValue(java.lang.Object object, java.lang.Object value)
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148 throws IllegalStateException, IllegalArgumentException
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152 AlcodonFrame target = (AlcodonFrame) object;
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153 target.addAlcodMap((jalview.schemabinding.version2.AlcodMap) value);
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154 } catch (java.lang.Exception ex)
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156 throw new IllegalStateException(ex.toString());
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160 public void resetValue(Object object) throws IllegalStateException,
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161 IllegalArgumentException
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165 AlcodonFrame target = (AlcodonFrame) object;
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166 target.removeAllAlcodMap();
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167 } catch (java.lang.Exception ex)
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169 throw new IllegalStateException(ex.toString());
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173 public java.lang.Object newInstance(java.lang.Object parent)
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175 return new jalview.schemabinding.version2.AlcodMap();
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178 desc.setHandler(handler);
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179 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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180 desc.setMultivalued(true);
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181 addFieldDescriptor(desc);
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183 // -- validation code for: _alcodMapList
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184 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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185 fieldValidator.setMinOccurs(0);
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186 { // -- local scope
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188 desc.setValidator(fieldValidator);
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196 * Method getAccessMode.
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198 * @return the access mode specified for this class.
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200 public org.exolab.castor.mapping.AccessMode getAccessMode()
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206 * Method getIdentity.
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208 * @return the identity field, null if this class has no identity.
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210 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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212 return super.getIdentity();
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216 * Method getJavaClass.
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218 * @return the Java class represented by this descriptor.
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220 public java.lang.Class getJavaClass()
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222 return jalview.schemabinding.version2.AlcodonFrame.class;
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226 * Method getNameSpacePrefix.
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228 * @return the namespace prefix to use when marshaling as XML.
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230 public java.lang.String getNameSpacePrefix()
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236 * Method getNameSpaceURI.
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238 * @return the namespace URI used when marshaling and unmarshaling as XML.
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240 public java.lang.String getNameSpaceURI()
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246 * Method getValidator.
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248 * @return a specific validator for the class described by this
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251 public org.exolab.castor.xml.TypeValidator getValidator()
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257 * Method getXMLName.
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259 * @return the XML Name for the Class being described.
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261 public java.lang.String getXMLName()
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267 * Method isElementDefinition.
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269 * @return true if XML schema definition of this Class is that of a global
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270 * element or element with anonymous type definition.
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272 public boolean isElementDefinition()
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274 return _elementDefinition;
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