2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
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3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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5 * This file is part of Jalview.
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7 * Jalview is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License
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9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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11 * Jalview is distributed in the hope that it will be useful, but
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12 * WITHOUT ANY WARRANTY; without even the implied warranty
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13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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14 * PURPOSE. See the GNU General Public License for more details.
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16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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18 package jalview.schemabinding.version2.descriptors;
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20 //---------------------------------/
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21 //- Imported classes and packages -/
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22 //---------------------------------/
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24 import jalview.schemabinding.version2.AnnotationColours;
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27 * Class AnnotationColoursDescriptor.
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29 * @version $Revision$ $Date$
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31 public class AnnotationColoursDescriptor extends
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32 org.exolab.castor.xml.util.XMLClassDescriptorImpl
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35 // --------------------------/
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36 // - Class/Member Variables -/
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37 // --------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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59 // ----------------/
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60 // - Constructors -/
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61 // ----------------/
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63 public AnnotationColoursDescriptor()
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66 _nsURI = "www.jalview.org";
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67 _xmlName = "AnnotationColours";
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68 _elementDefinition = true;
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69 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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70 org.exolab.castor.mapping.FieldHandler handler = null;
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71 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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72 // -- initialize attribute descriptors
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74 // -- _aboveThreshold
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75 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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76 java.lang.Integer.TYPE, "_aboveThreshold", "aboveThreshold",
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77 org.exolab.castor.xml.NodeType.Attribute);
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78 handler = new org.exolab.castor.xml.XMLFieldHandler()
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80 public java.lang.Object getValue(java.lang.Object object)
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81 throws IllegalStateException
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83 AnnotationColours target = (AnnotationColours) object;
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84 if (!target.hasAboveThreshold())
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88 return new java.lang.Integer(target.getAboveThreshold());
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91 public void setValue(java.lang.Object object, java.lang.Object value)
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92 throws IllegalStateException, IllegalArgumentException
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96 AnnotationColours target = (AnnotationColours) object;
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97 // if null, use delete method for optional primitives
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100 target.deleteAboveThreshold();
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103 target.setAboveThreshold(((java.lang.Integer) value).intValue());
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104 } catch (java.lang.Exception ex)
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106 throw new IllegalStateException(ex.toString());
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110 public java.lang.Object newInstance(java.lang.Object parent)
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115 desc.setHandler(handler);
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116 desc.setMultivalued(false);
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117 addFieldDescriptor(desc);
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119 // -- validation code for: _aboveThreshold
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120 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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121 { // -- local scope
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122 org.exolab.castor.xml.validators.IntValidator typeValidator;
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123 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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124 fieldValidator.setValidator(typeValidator);
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125 typeValidator.setMinInclusive(-2147483648);
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126 typeValidator.setMaxInclusive(2147483647);
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128 desc.setValidator(fieldValidator);
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130 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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131 java.lang.String.class, "_annotation", "annotation",
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132 org.exolab.castor.xml.NodeType.Attribute);
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133 desc.setImmutable(true);
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134 handler = new org.exolab.castor.xml.XMLFieldHandler()
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136 public java.lang.Object getValue(java.lang.Object object)
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137 throws IllegalStateException
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139 AnnotationColours target = (AnnotationColours) object;
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140 return target.getAnnotation();
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143 public void setValue(java.lang.Object object, java.lang.Object value)
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144 throws IllegalStateException, IllegalArgumentException
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148 AnnotationColours target = (AnnotationColours) object;
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149 target.setAnnotation((java.lang.String) value);
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150 } catch (java.lang.Exception ex)
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152 throw new IllegalStateException(ex.toString());
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156 public java.lang.Object newInstance(java.lang.Object parent)
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161 desc.setHandler(handler);
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162 desc.setMultivalued(false);
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163 addFieldDescriptor(desc);
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165 // -- validation code for: _annotation
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166 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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167 { // -- local scope
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168 org.exolab.castor.xml.validators.StringValidator typeValidator;
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169 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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170 fieldValidator.setValidator(typeValidator);
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171 typeValidator.setWhiteSpace("preserve");
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173 desc.setValidator(fieldValidator);
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175 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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176 java.lang.Integer.TYPE, "_minColour", "minColour",
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177 org.exolab.castor.xml.NodeType.Attribute);
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178 handler = new org.exolab.castor.xml.XMLFieldHandler()
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180 public java.lang.Object getValue(java.lang.Object object)
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181 throws IllegalStateException
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183 AnnotationColours target = (AnnotationColours) object;
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184 if (!target.hasMinColour())
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188 return new java.lang.Integer(target.getMinColour());
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191 public void setValue(java.lang.Object object, java.lang.Object value)
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192 throws IllegalStateException, IllegalArgumentException
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196 AnnotationColours target = (AnnotationColours) object;
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197 // if null, use delete method for optional primitives
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200 target.deleteMinColour();
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203 target.setMinColour(((java.lang.Integer) value).intValue());
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204 } catch (java.lang.Exception ex)
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206 throw new IllegalStateException(ex.toString());
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210 public java.lang.Object newInstance(java.lang.Object parent)
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215 desc.setHandler(handler);
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216 desc.setMultivalued(false);
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217 addFieldDescriptor(desc);
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219 // -- validation code for: _minColour
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220 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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221 { // -- local scope
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222 org.exolab.castor.xml.validators.IntValidator typeValidator;
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223 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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224 fieldValidator.setValidator(typeValidator);
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225 typeValidator.setMinInclusive(-2147483648);
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226 typeValidator.setMaxInclusive(2147483647);
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228 desc.setValidator(fieldValidator);
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230 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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231 java.lang.Integer.TYPE, "_maxColour", "maxColour",
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232 org.exolab.castor.xml.NodeType.Attribute);
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233 handler = new org.exolab.castor.xml.XMLFieldHandler()
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235 public java.lang.Object getValue(java.lang.Object object)
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236 throws IllegalStateException
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238 AnnotationColours target = (AnnotationColours) object;
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239 if (!target.hasMaxColour())
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243 return new java.lang.Integer(target.getMaxColour());
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246 public void setValue(java.lang.Object object, java.lang.Object value)
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247 throws IllegalStateException, IllegalArgumentException
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251 AnnotationColours target = (AnnotationColours) object;
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252 // if null, use delete method for optional primitives
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255 target.deleteMaxColour();
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258 target.setMaxColour(((java.lang.Integer) value).intValue());
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259 } catch (java.lang.Exception ex)
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261 throw new IllegalStateException(ex.toString());
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265 public java.lang.Object newInstance(java.lang.Object parent)
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270 desc.setHandler(handler);
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271 desc.setMultivalued(false);
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272 addFieldDescriptor(desc);
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274 // -- validation code for: _maxColour
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275 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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276 { // -- local scope
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277 org.exolab.castor.xml.validators.IntValidator typeValidator;
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278 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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279 fieldValidator.setValidator(typeValidator);
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280 typeValidator.setMinInclusive(-2147483648);
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281 typeValidator.setMaxInclusive(2147483647);
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283 desc.setValidator(fieldValidator);
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284 // -- _colourScheme
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285 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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286 java.lang.String.class, "_colourScheme", "colourScheme",
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287 org.exolab.castor.xml.NodeType.Attribute);
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288 desc.setImmutable(true);
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289 handler = new org.exolab.castor.xml.XMLFieldHandler()
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291 public java.lang.Object getValue(java.lang.Object object)
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292 throws IllegalStateException
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294 AnnotationColours target = (AnnotationColours) object;
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295 return target.getColourScheme();
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298 public void setValue(java.lang.Object object, java.lang.Object value)
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299 throws IllegalStateException, IllegalArgumentException
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303 AnnotationColours target = (AnnotationColours) object;
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304 target.setColourScheme((java.lang.String) value);
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305 } catch (java.lang.Exception ex)
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307 throw new IllegalStateException(ex.toString());
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311 public java.lang.Object newInstance(java.lang.Object parent)
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316 desc.setHandler(handler);
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317 desc.setMultivalued(false);
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318 addFieldDescriptor(desc);
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320 // -- validation code for: _colourScheme
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321 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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322 { // -- local scope
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323 org.exolab.castor.xml.validators.StringValidator typeValidator;
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324 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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325 fieldValidator.setValidator(typeValidator);
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326 typeValidator.setWhiteSpace("preserve");
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328 desc.setValidator(fieldValidator);
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330 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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331 java.lang.Float.TYPE, "_threshold", "threshold",
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332 org.exolab.castor.xml.NodeType.Attribute);
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333 handler = new org.exolab.castor.xml.XMLFieldHandler()
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335 public java.lang.Object getValue(java.lang.Object object)
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336 throws IllegalStateException
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338 AnnotationColours target = (AnnotationColours) object;
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339 if (!target.hasThreshold())
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343 return new java.lang.Float(target.getThreshold());
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346 public void setValue(java.lang.Object object, java.lang.Object value)
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347 throws IllegalStateException, IllegalArgumentException
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351 AnnotationColours target = (AnnotationColours) object;
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352 // if null, use delete method for optional primitives
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355 target.deleteThreshold();
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358 target.setThreshold(((java.lang.Float) value).floatValue());
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359 } catch (java.lang.Exception ex)
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361 throw new IllegalStateException(ex.toString());
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365 public java.lang.Object newInstance(java.lang.Object parent)
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370 desc.setHandler(handler);
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371 desc.setMultivalued(false);
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372 addFieldDescriptor(desc);
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374 // -- validation code for: _threshold
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375 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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376 { // -- local scope
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377 org.exolab.castor.xml.validators.FloatValidator typeValidator;
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378 typeValidator = new org.exolab.castor.xml.validators.FloatValidator();
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379 fieldValidator.setValidator(typeValidator);
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380 typeValidator.setMinInclusive((float) -3.4028235E38);
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381 typeValidator.setMaxInclusive((float) 3.4028235E38);
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383 desc.setValidator(fieldValidator);
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384 // -- initialize element descriptors
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393 * Method getAccessMode.
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395 * @return the access mode specified for this class.
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397 public org.exolab.castor.mapping.AccessMode getAccessMode()
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403 * Method getIdentity.
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405 * @return the identity field, null if this class has no identity.
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407 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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409 return super.getIdentity();
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413 * Method getJavaClass.
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415 * @return the Java class represented by this descriptor.
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417 public java.lang.Class getJavaClass()
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419 return jalview.schemabinding.version2.AnnotationColours.class;
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423 * Method getNameSpacePrefix.
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425 * @return the namespace prefix to use when marshaling as XML.
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427 public java.lang.String getNameSpacePrefix()
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433 * Method getNameSpaceURI.
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435 * @return the namespace URI used when marshaling and unmarshaling as XML.
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437 public java.lang.String getNameSpaceURI()
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443 * Method getValidator.
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445 * @return a specific validator for the class described by this
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448 public org.exolab.castor.xml.TypeValidator getValidator()
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454 * Method getXMLName.
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456 * @return the XML Name for the Class being described.
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458 public java.lang.String getXMLName()
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464 * Method isElementDefinition.
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466 * @return true if XML schema definition of this Class is that of a global
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467 * element or element with anonymous type definition.
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469 public boolean isElementDefinition()
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471 return _elementDefinition;
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