src/jalview/schemabinding/version2/descriptors/AnnotationDescriptor.java

   1 /*******************************************************************************
   2  * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
   3  * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
   4  *
   5  * This file is part of Jalview.
   6  *
   7  * Jalview is free software: you can redistribute it and/or
   8  * modify it under the terms of the GNU General Public License
   9  * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
  10  *
  11  * Jalview is distributed in the hope that it will be useful, but
  12  * WITHOUT ANY WARRANTY; without even the implied warranty
  13  * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
  14  * PURPOSE.  See the GNU General Public License for more details.
  15  *
  16  * You should have received a copy of the GNU General Public License along with Jalview.  If not, see <http://www.gnu.org/licenses/>.
  17  *******************************************************************************/
  18 /*
  19  * This class was automatically generated with
  20  * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
  21  * Schema.
  22  * $Id$
  23  */
  24
  25 package jalview.schemabinding.version2.descriptors;
  26
  27   //---------------------------------/
  28  //- Imported classes and packages -/
  29 //---------------------------------/
  30
  31 import jalview.schemabinding.version2.Annotation;
  32
  33 /**
  34  * Class AnnotationDescriptor.
  35  *
  36  * @version $Revision$ $Date$
  37  */
  38 public class AnnotationDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
  39
  40
  41       //--------------------------/
  42      //- Class/Member Variables -/
  43     //--------------------------/
  44
  45     /**
  46      * Field _elementDefinition.
  47      */
  48     private boolean _elementDefinition;
  49
  50     /**
  51      * Field _nsPrefix.
  52      */
  53     private java.lang.String _nsPrefix;
  54
  55     /**
  56      * Field _nsURI.
  57      */
  58     private java.lang.String _nsURI;
  59
  60     /**
  61      * Field _xmlName.
  62      */
  63     private java.lang.String _xmlName;
  64
  65
  66       //----------------/
  67      //- Constructors -/
  68     //----------------/
  69
  70     public AnnotationDescriptor() {
  71         super();
  72         _nsURI = "www.vamsas.ac.uk/jalview/version2";
  73         _xmlName = "Annotation";
  74         _elementDefinition = true;
  75
  76         //-- set grouping compositor
  77         setCompositorAsSequence();
  78         org.exolab.castor.xml.util.XMLFieldDescriptorImpl  desc           = null;
  79         org.exolab.castor.mapping.FieldHandler             handler        = null;
  80         org.exolab.castor.xml.FieldValidator               fieldValidator = null;
  81         //-- initialize attribute descriptors
  82
  83         //-- _graph
  84         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_graph", "graph", org.exolab.castor.xml.NodeType.Attribute);
  85         handler = new org.exolab.castor.xml.XMLFieldHandler() {
  86             public java.lang.Object getValue( java.lang.Object object )
  87                 throws IllegalStateException
  88             {
  89                 Annotation target = (Annotation) object;
  90                 if (!target.hasGraph()) { return null; }
  91                 return (target.getGraph() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
  92             }
  93             public void setValue( java.lang.Object object, java.lang.Object value)
  94                 throws IllegalStateException, IllegalArgumentException
  95             {
  96                 try {
  97                     Annotation target = (Annotation) object;
  98                     // ignore null values for non optional primitives
  99                     if (value == null) { return; }
 100
 101                     target.setGraph( ((java.lang.Boolean) value).booleanValue());
 102                 } catch (java.lang.Exception ex) {
 103                     throw new IllegalStateException(ex.toString());
 104                 }
 105             }
 106             public java.lang.Object newInstance(java.lang.Object parent) {
 107                 return null;
 108             }
 109         };
 110         desc.setHandler(handler);
 111         desc.setRequired(true);
 112         desc.setMultivalued(false);
 113         addFieldDescriptor(desc);
 114
 115         //-- validation code for: _graph
 116         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 117         fieldValidator.setMinOccurs(1);
 118         { //-- local scope
 119             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 120             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 121             fieldValidator.setValidator(typeValidator);
 122         }
 123         desc.setValidator(fieldValidator);
 124         //-- _graphType
 125         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphType", "graphType", org.exolab.castor.xml.NodeType.Attribute);
 126         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 127             public java.lang.Object getValue( java.lang.Object object )
 128                 throws IllegalStateException
 129             {
 130                 Annotation target = (Annotation) object;
 131                 if (!target.hasGraphType()) { return null; }
 132                 return new java.lang.Integer(target.getGraphType());
 133             }
 134             public void setValue( java.lang.Object object, java.lang.Object value)
 135                 throws IllegalStateException, IllegalArgumentException
 136             {
 137                 try {
 138                     Annotation target = (Annotation) object;
 139                     // if null, use delete method for optional primitives
 140                     if (value == null) {
 141                         target.deleteGraphType();
 142                         return;
 143                     }
 144                     target.setGraphType( ((java.lang.Integer) value).intValue());
 145                 } catch (java.lang.Exception ex) {
 146                     throw new IllegalStateException(ex.toString());
 147                 }
 148             }
 149             public java.lang.Object newInstance(java.lang.Object parent) {
 150                 return null;
 151             }
 152         };
 153         desc.setHandler(handler);
 154         desc.setMultivalued(false);
 155         addFieldDescriptor(desc);
 156
 157         //-- validation code for: _graphType
 158         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 159         { //-- local scope
 160             org.exolab.castor.xml.validators.IntValidator typeValidator;
 161             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 162             fieldValidator.setValidator(typeValidator);
 163             typeValidator.setMinInclusive(-2147483648);
 164             typeValidator.setMaxInclusive(2147483647);
 165         }
 166         desc.setValidator(fieldValidator);
 167         //-- _sequenceRef
 168         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_sequenceRef", "sequenceRef", org.exolab.castor.xml.NodeType.Attribute);
 169         desc.setImmutable(true);
 170         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 171             public java.lang.Object getValue( java.lang.Object object )
 172                 throws IllegalStateException
 173             {
 174                 Annotation target = (Annotation) object;
 175                 return target.getSequenceRef();
 176             }
 177             public void setValue( java.lang.Object object, java.lang.Object value)
 178                 throws IllegalStateException, IllegalArgumentException
 179             {
 180                 try {
 181                     Annotation target = (Annotation) object;
 182                     target.setSequenceRef( (java.lang.String) value);
 183                 } catch (java.lang.Exception ex) {
 184                     throw new IllegalStateException(ex.toString());
 185                 }
 186             }
 187             public java.lang.Object newInstance(java.lang.Object parent) {
 188                 return null;
 189             }
 190         };
 191         desc.setHandler(handler);
 192         desc.setMultivalued(false);
 193         addFieldDescriptor(desc);
 194
 195         //-- validation code for: _sequenceRef
 196         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 197         { //-- local scope
 198             org.exolab.castor.xml.validators.StringValidator typeValidator;
 199             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 200             fieldValidator.setValidator(typeValidator);
 201             typeValidator.setWhiteSpace("preserve");
 202         }
 203         desc.setValidator(fieldValidator);
 204         //-- _groupRef
 205         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_groupRef", "groupRef", org.exolab.castor.xml.NodeType.Attribute);
 206         desc.setImmutable(true);
 207         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 208             public java.lang.Object getValue( java.lang.Object object )
 209                 throws IllegalStateException
 210             {
 211                 Annotation target = (Annotation) object;
 212                 return target.getGroupRef();
 213             }
 214             public void setValue( java.lang.Object object, java.lang.Object value)
 215                 throws IllegalStateException, IllegalArgumentException
 216             {
 217                 try {
 218                     Annotation target = (Annotation) object;
 219                     target.setGroupRef( (java.lang.String) value);
 220                 } catch (java.lang.Exception ex) {
 221                     throw new IllegalStateException(ex.toString());
 222                 }
 223             }
 224             public java.lang.Object newInstance(java.lang.Object parent) {
 225                 return null;
 226             }
 227         };
 228         desc.setHandler(handler);
 229         desc.setMultivalued(false);
 230         addFieldDescriptor(desc);
 231
 232         //-- validation code for: _groupRef
 233         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 234         { //-- local scope
 235             org.exolab.castor.xml.validators.StringValidator typeValidator;
 236             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 237             fieldValidator.setValidator(typeValidator);
 238             typeValidator.setWhiteSpace("preserve");
 239         }
 240         desc.setValidator(fieldValidator);
 241         //-- _graphColour
 242         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphColour", "graphColour", org.exolab.castor.xml.NodeType.Attribute);
 243         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 244             public java.lang.Object getValue( java.lang.Object object )
 245                 throws IllegalStateException
 246             {
 247                 Annotation target = (Annotation) object;
 248                 if (!target.hasGraphColour()) { return null; }
 249                 return new java.lang.Integer(target.getGraphColour());
 250             }
 251             public void setValue( java.lang.Object object, java.lang.Object value)
 252                 throws IllegalStateException, IllegalArgumentException
 253             {
 254                 try {
 255                     Annotation target = (Annotation) object;
 256                     // if null, use delete method for optional primitives
 257                     if (value == null) {
 258                         target.deleteGraphColour();
 259                         return;
 260                     }
 261                     target.setGraphColour( ((java.lang.Integer) value).intValue());
 262                 } catch (java.lang.Exception ex) {
 263                     throw new IllegalStateException(ex.toString());
 264                 }
 265             }
 266             public java.lang.Object newInstance(java.lang.Object parent) {
 267                 return null;
 268             }
 269         };
 270         desc.setHandler(handler);
 271         desc.setMultivalued(false);
 272         addFieldDescriptor(desc);
 273
 274         //-- validation code for: _graphColour
 275         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 276         { //-- local scope
 277             org.exolab.castor.xml.validators.IntValidator typeValidator;
 278             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 279             fieldValidator.setValidator(typeValidator);
 280             typeValidator.setMinInclusive(-2147483648);
 281             typeValidator.setMaxInclusive(2147483647);
 282         }
 283         desc.setValidator(fieldValidator);
 284         //-- _graphGroup
 285         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphGroup", "graphGroup", org.exolab.castor.xml.NodeType.Attribute);
 286         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 287             public java.lang.Object getValue( java.lang.Object object )
 288                 throws IllegalStateException
 289             {
 290                 Annotation target = (Annotation) object;
 291                 if (!target.hasGraphGroup()) { return null; }
 292                 return new java.lang.Integer(target.getGraphGroup());
 293             }
 294             public void setValue( java.lang.Object object, java.lang.Object value)
 295                 throws IllegalStateException, IllegalArgumentException
 296             {
 297                 try {
 298                     Annotation target = (Annotation) object;
 299                     // if null, use delete method for optional primitives
 300                     if (value == null) {
 301                         target.deleteGraphGroup();
 302                         return;
 303                     }
 304                     target.setGraphGroup( ((java.lang.Integer) value).intValue());
 305                 } catch (java.lang.Exception ex) {
 306                     throw new IllegalStateException(ex.toString());
 307                 }
 308             }
 309             public java.lang.Object newInstance(java.lang.Object parent) {
 310                 return null;
 311             }
 312         };
 313         desc.setHandler(handler);
 314         desc.setMultivalued(false);
 315         addFieldDescriptor(desc);
 316
 317         //-- validation code for: _graphGroup
 318         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 319         { //-- local scope
 320             org.exolab.castor.xml.validators.IntValidator typeValidator;
 321             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 322             fieldValidator.setValidator(typeValidator);
 323             typeValidator.setMinInclusive(-2147483648);
 324             typeValidator.setMaxInclusive(2147483647);
 325         }
 326         desc.setValidator(fieldValidator);
 327         //-- _graphHeight
 328         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphHeight", "graphHeight", org.exolab.castor.xml.NodeType.Attribute);
 329         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 330             public java.lang.Object getValue( java.lang.Object object )
 331                 throws IllegalStateException
 332             {
 333                 Annotation target = (Annotation) object;
 334                 if (!target.hasGraphHeight()) { return null; }
 335                 return new java.lang.Integer(target.getGraphHeight());
 336             }
 337             public void setValue( java.lang.Object object, java.lang.Object value)
 338                 throws IllegalStateException, IllegalArgumentException
 339             {
 340                 try {
 341                     Annotation target = (Annotation) object;
 342                     // if null, use delete method for optional primitives
 343                     if (value == null) {
 344                         target.deleteGraphHeight();
 345                         return;
 346                     }
 347                     target.setGraphHeight( ((java.lang.Integer) value).intValue());
 348                 } catch (java.lang.Exception ex) {
 349                     throw new IllegalStateException(ex.toString());
 350                 }
 351             }
 352             public java.lang.Object newInstance(java.lang.Object parent) {
 353                 return null;
 354             }
 355         };
 356         desc.setHandler(handler);
 357         desc.setMultivalued(false);
 358         addFieldDescriptor(desc);
 359
 360         //-- validation code for: _graphHeight
 361         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 362         { //-- local scope
 363             org.exolab.castor.xml.validators.IntValidator typeValidator;
 364             typeValidator = new org.exolab.castor.xml.validators.IntValidator();
 365             fieldValidator.setValidator(typeValidator);
 366             typeValidator.setMinInclusive(-2147483648);
 367             typeValidator.setMaxInclusive(2147483647);
 368         }
 369         desc.setValidator(fieldValidator);
 370         //-- _id
 371         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
 372         desc.setImmutable(true);
 373         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 374             public java.lang.Object getValue( java.lang.Object object )
 375                 throws IllegalStateException
 376             {
 377                 Annotation target = (Annotation) object;
 378                 return target.getId();
 379             }
 380             public void setValue( java.lang.Object object, java.lang.Object value)
 381                 throws IllegalStateException, IllegalArgumentException
 382             {
 383                 try {
 384                     Annotation target = (Annotation) object;
 385                     target.setId( (java.lang.String) value);
 386                 } catch (java.lang.Exception ex) {
 387                     throw new IllegalStateException(ex.toString());
 388                 }
 389             }
 390             public java.lang.Object newInstance(java.lang.Object parent) {
 391                 return null;
 392             }
 393         };
 394         desc.setHandler(handler);
 395         desc.setMultivalued(false);
 396         addFieldDescriptor(desc);
 397
 398         //-- validation code for: _id
 399         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 400         { //-- local scope
 401             org.exolab.castor.xml.validators.StringValidator typeValidator;
 402             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 403             fieldValidator.setValidator(typeValidator);
 404             typeValidator.setWhiteSpace("preserve");
 405         }
 406         desc.setValidator(fieldValidator);
 407         //-- _scoreOnly
 408         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_scoreOnly", "scoreOnly", org.exolab.castor.xml.NodeType.Attribute);
 409         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 410             public java.lang.Object getValue( java.lang.Object object )
 411                 throws IllegalStateException
 412             {
 413                 Annotation target = (Annotation) object;
 414                 if (!target.hasScoreOnly()) { return null; }
 415                 return (target.getScoreOnly() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 416             }
 417             public void setValue( java.lang.Object object, java.lang.Object value)
 418                 throws IllegalStateException, IllegalArgumentException
 419             {
 420                 try {
 421                     Annotation target = (Annotation) object;
 422                     // if null, use delete method for optional primitives
 423                     if (value == null) {
 424                         target.deleteScoreOnly();
 425                         return;
 426                     }
 427                     target.setScoreOnly( ((java.lang.Boolean) value).booleanValue());
 428                 } catch (java.lang.Exception ex) {
 429                     throw new IllegalStateException(ex.toString());
 430                 }
 431             }
 432             public java.lang.Object newInstance(java.lang.Object parent) {
 433                 return null;
 434             }
 435         };
 436         desc.setHandler(handler);
 437         desc.setMultivalued(false);
 438         addFieldDescriptor(desc);
 439
 440         //-- validation code for: _scoreOnly
 441         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 442         { //-- local scope
 443             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 444             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 445             fieldValidator.setValidator(typeValidator);
 446         }
 447         desc.setValidator(fieldValidator);
 448         //-- _score
 449         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Double.TYPE, "_score", "score", org.exolab.castor.xml.NodeType.Attribute);
 450         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 451             public java.lang.Object getValue( java.lang.Object object )
 452                 throws IllegalStateException
 453             {
 454                 Annotation target = (Annotation) object;
 455                 if (!target.hasScore()) { return null; }
 456                 return new java.lang.Double(target.getScore());
 457             }
 458             public void setValue( java.lang.Object object, java.lang.Object value)
 459                 throws IllegalStateException, IllegalArgumentException
 460             {
 461                 try {
 462                     Annotation target = (Annotation) object;
 463                     // if null, use delete method for optional primitives
 464                     if (value == null) {
 465                         target.deleteScore();
 466                         return;
 467                     }
 468                     target.setScore( ((java.lang.Double) value).doubleValue());
 469                 } catch (java.lang.Exception ex) {
 470                     throw new IllegalStateException(ex.toString());
 471                 }
 472             }
 473             public java.lang.Object newInstance(java.lang.Object parent) {
 474                 return null;
 475             }
 476         };
 477         desc.setHandler(handler);
 478         desc.setMultivalued(false);
 479         addFieldDescriptor(desc);
 480
 481         //-- validation code for: _score
 482         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 483         { //-- local scope
 484             org.exolab.castor.xml.validators.DoubleValidator typeValidator;
 485             typeValidator = new org.exolab.castor.xml.validators.DoubleValidator();
 486             fieldValidator.setValidator(typeValidator);
 487             typeValidator.setMinInclusive(-1.7976931348623157E308);
 488             typeValidator.setMaxInclusive(1.7976931348623157E308);
 489         }
 490         desc.setValidator(fieldValidator);
 491         //-- _visible
 492         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_visible", "visible", org.exolab.castor.xml.NodeType.Attribute);
 493         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 494             public java.lang.Object getValue( java.lang.Object object )
 495                 throws IllegalStateException
 496             {
 497                 Annotation target = (Annotation) object;
 498                 if (!target.hasVisible()) { return null; }
 499                 return (target.getVisible() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 500             }
 501             public void setValue( java.lang.Object object, java.lang.Object value)
 502                 throws IllegalStateException, IllegalArgumentException
 503             {
 504                 try {
 505                     Annotation target = (Annotation) object;
 506                     // if null, use delete method for optional primitives
 507                     if (value == null) {
 508                         target.deleteVisible();
 509                         return;
 510                     }
 511                     target.setVisible( ((java.lang.Boolean) value).booleanValue());
 512                 } catch (java.lang.Exception ex) {
 513                     throw new IllegalStateException(ex.toString());
 514                 }
 515             }
 516             public java.lang.Object newInstance(java.lang.Object parent) {
 517                 return null;
 518             }
 519         };
 520         desc.setHandler(handler);
 521         desc.setMultivalued(false);
 522         addFieldDescriptor(desc);
 523
 524         //-- validation code for: _visible
 525         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 526         { //-- local scope
 527             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 528             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 529             fieldValidator.setValidator(typeValidator);
 530         }
 531         desc.setValidator(fieldValidator);
 532         //-- _centreColLabels
 533         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_centreColLabels", "centreColLabels", org.exolab.castor.xml.NodeType.Attribute);
 534         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 535             public java.lang.Object getValue( java.lang.Object object )
 536                 throws IllegalStateException
 537             {
 538                 Annotation target = (Annotation) object;
 539                 if (!target.hasCentreColLabels()) { return null; }
 540                 return (target.getCentreColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 541             }
 542             public void setValue( java.lang.Object object, java.lang.Object value)
 543                 throws IllegalStateException, IllegalArgumentException
 544             {
 545                 try {
 546                     Annotation target = (Annotation) object;
 547                     // if null, use delete method for optional primitives
 548                     if (value == null) {
 549                         target.deleteCentreColLabels();
 550                         return;
 551                     }
 552                     target.setCentreColLabels( ((java.lang.Boolean) value).booleanValue());
 553                 } catch (java.lang.Exception ex) {
 554                     throw new IllegalStateException(ex.toString());
 555                 }
 556             }
 557             public java.lang.Object newInstance(java.lang.Object parent) {
 558                 return null;
 559             }
 560         };
 561         desc.setHandler(handler);
 562         desc.setMultivalued(false);
 563         addFieldDescriptor(desc);
 564
 565         //-- validation code for: _centreColLabels
 566         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 567         { //-- local scope
 568             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 569             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 570             fieldValidator.setValidator(typeValidator);
 571         }
 572         desc.setValidator(fieldValidator);
 573         //-- _scaleColLabels
 574         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_scaleColLabels", "scaleColLabels", org.exolab.castor.xml.NodeType.Attribute);
 575         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 576             public java.lang.Object getValue( java.lang.Object object )
 577                 throws IllegalStateException
 578             {
 579                 Annotation target = (Annotation) object;
 580                 if (!target.hasScaleColLabels()) { return null; }
 581                 return (target.getScaleColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 582             }
 583             public void setValue( java.lang.Object object, java.lang.Object value)
 584                 throws IllegalStateException, IllegalArgumentException
 585             {
 586                 try {
 587                     Annotation target = (Annotation) object;
 588                     // if null, use delete method for optional primitives
 589                     if (value == null) {
 590                         target.deleteScaleColLabels();
 591                         return;
 592                     }
 593                     target.setScaleColLabels( ((java.lang.Boolean) value).booleanValue());
 594                 } catch (java.lang.Exception ex) {
 595                     throw new IllegalStateException(ex.toString());
 596                 }
 597             }
 598             public java.lang.Object newInstance(java.lang.Object parent) {
 599                 return null;
 600             }
 601         };
 602         desc.setHandler(handler);
 603         desc.setMultivalued(false);
 604         addFieldDescriptor(desc);
 605
 606         //-- validation code for: _scaleColLabels
 607         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 608         { //-- local scope
 609             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 610             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 611             fieldValidator.setValidator(typeValidator);
 612         }
 613         desc.setValidator(fieldValidator);
 614         //-- _showAllColLabels
 615         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showAllColLabels", "showAllColLabels", org.exolab.castor.xml.NodeType.Attribute);
 616         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 617             public java.lang.Object getValue( java.lang.Object object )
 618                 throws IllegalStateException
 619             {
 620                 Annotation target = (Annotation) object;
 621                 if (!target.hasShowAllColLabels()) { return null; }
 622                 return (target.getShowAllColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 623             }
 624             public void setValue( java.lang.Object object, java.lang.Object value)
 625                 throws IllegalStateException, IllegalArgumentException
 626             {
 627                 try {
 628                     Annotation target = (Annotation) object;
 629                     // if null, use delete method for optional primitives
 630                     if (value == null) {
 631                         target.deleteShowAllColLabels();
 632                         return;
 633                     }
 634                     target.setShowAllColLabels( ((java.lang.Boolean) value).booleanValue());
 635                 } catch (java.lang.Exception ex) {
 636                     throw new IllegalStateException(ex.toString());
 637                 }
 638             }
 639             public java.lang.Object newInstance(java.lang.Object parent) {
 640                 return null;
 641             }
 642         };
 643         desc.setHandler(handler);
 644         desc.setMultivalued(false);
 645         addFieldDescriptor(desc);
 646
 647         //-- validation code for: _showAllColLabels
 648         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 649         { //-- local scope
 650             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 651             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 652             fieldValidator.setValidator(typeValidator);
 653         }
 654         desc.setValidator(fieldValidator);
 655         //-- _autoCalculated
 656         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_autoCalculated", "autoCalculated", org.exolab.castor.xml.NodeType.Attribute);
 657         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 658             public java.lang.Object getValue( java.lang.Object object )
 659                 throws IllegalStateException
 660             {
 661                 Annotation target = (Annotation) object;
 662                 if (!target.hasAutoCalculated()) { return null; }
 663                 return (target.getAutoCalculated() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
 664             }
 665             public void setValue( java.lang.Object object, java.lang.Object value)
 666                 throws IllegalStateException, IllegalArgumentException
 667             {
 668                 try {
 669                     Annotation target = (Annotation) object;
 670                     // if null, use delete method for optional primitives
 671                     if (value == null) {
 672                         target.deleteAutoCalculated();
 673                         return;
 674                     }
 675                     target.setAutoCalculated( ((java.lang.Boolean) value).booleanValue());
 676                 } catch (java.lang.Exception ex) {
 677                     throw new IllegalStateException(ex.toString());
 678                 }
 679             }
 680             public java.lang.Object newInstance(java.lang.Object parent) {
 681                 return null;
 682             }
 683         };
 684         desc.setHandler(handler);
 685         desc.setMultivalued(false);
 686         addFieldDescriptor(desc);
 687
 688         //-- validation code for: _autoCalculated
 689         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 690         { //-- local scope
 691             org.exolab.castor.xml.validators.BooleanValidator typeValidator;
 692             typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
 693             fieldValidator.setValidator(typeValidator);
 694         }
 695         desc.setValidator(fieldValidator);
 696         //-- initialize element descriptors
 697
 698         //-- _annotationElementList
 699         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AnnotationElement.class, "_annotationElementList", "annotationElement", org.exolab.castor.xml.NodeType.Element);
 700         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 701             public java.lang.Object getValue( java.lang.Object object )
 702                 throws IllegalStateException
 703             {
 704                 Annotation target = (Annotation) object;
 705                 return target.getAnnotationElement();
 706             }
 707             public void setValue( java.lang.Object object, java.lang.Object value)
 708                 throws IllegalStateException, IllegalArgumentException
 709             {
 710                 try {
 711                     Annotation target = (Annotation) object;
 712                     target.addAnnotationElement( (jalview.schemabinding.version2.AnnotationElement) value);
 713                 } catch (java.lang.Exception ex) {
 714                     throw new IllegalStateException(ex.toString());
 715                 }
 716             }
 717             public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
 718                 try {
 719                     Annotation target = (Annotation) object;
 720                     target.removeAllAnnotationElement();
 721                 } catch (java.lang.Exception ex) {
 722                     throw new IllegalStateException(ex.toString());
 723                 }
 724             }
 725             public java.lang.Object newInstance(java.lang.Object parent) {
 726                 return new jalview.schemabinding.version2.AnnotationElement();
 727             }
 728         };
 729         desc.setHandler(handler);
 730         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 731         desc.setMultivalued(true);
 732         addFieldDescriptor(desc);
 733
 734         //-- validation code for: _annotationElementList
 735         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 736         fieldValidator.setMinOccurs(0);
 737         { //-- local scope
 738         }
 739         desc.setValidator(fieldValidator);
 740         //-- _label
 741         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_label", "label", org.exolab.castor.xml.NodeType.Element);
 742         desc.setImmutable(true);
 743         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 744             public java.lang.Object getValue( java.lang.Object object )
 745                 throws IllegalStateException
 746             {
 747                 Annotation target = (Annotation) object;
 748                 return target.getLabel();
 749             }
 750             public void setValue( java.lang.Object object, java.lang.Object value)
 751                 throws IllegalStateException, IllegalArgumentException
 752             {
 753                 try {
 754                     Annotation target = (Annotation) object;
 755                     target.setLabel( (java.lang.String) value);
 756                 } catch (java.lang.Exception ex) {
 757                     throw new IllegalStateException(ex.toString());
 758                 }
 759             }
 760             public java.lang.Object newInstance(java.lang.Object parent) {
 761                 return null;
 762             }
 763         };
 764         desc.setHandler(handler);
 765         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 766         desc.setRequired(true);
 767         desc.setMultivalued(false);
 768         addFieldDescriptor(desc);
 769
 770         //-- validation code for: _label
 771         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 772         fieldValidator.setMinOccurs(1);
 773         { //-- local scope
 774             org.exolab.castor.xml.validators.StringValidator typeValidator;
 775             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 776             fieldValidator.setValidator(typeValidator);
 777             typeValidator.setWhiteSpace("preserve");
 778         }
 779         desc.setValidator(fieldValidator);
 780         //-- _description
 781         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element);
 782         desc.setImmutable(true);
 783         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 784             public java.lang.Object getValue( java.lang.Object object )
 785                 throws IllegalStateException
 786             {
 787                 Annotation target = (Annotation) object;
 788                 return target.getDescription();
 789             }
 790             public void setValue( java.lang.Object object, java.lang.Object value)
 791                 throws IllegalStateException, IllegalArgumentException
 792             {
 793                 try {
 794                     Annotation target = (Annotation) object;
 795                     target.setDescription( (java.lang.String) value);
 796                 } catch (java.lang.Exception ex) {
 797                     throw new IllegalStateException(ex.toString());
 798                 }
 799             }
 800             public java.lang.Object newInstance(java.lang.Object parent) {
 801                 return null;
 802             }
 803         };
 804         desc.setHandler(handler);
 805         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 806         desc.setMultivalued(false);
 807         addFieldDescriptor(desc);
 808
 809         //-- validation code for: _description
 810         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 811         { //-- local scope
 812             org.exolab.castor.xml.validators.StringValidator typeValidator;
 813             typeValidator = new org.exolab.castor.xml.validators.StringValidator();
 814             fieldValidator.setValidator(typeValidator);
 815             typeValidator.setWhiteSpace("preserve");
 816         }
 817         desc.setValidator(fieldValidator);
 818         //-- _thresholdLine
 819         desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.ThresholdLine.class, "_thresholdLine", "thresholdLine", org.exolab.castor.xml.NodeType.Element);
 820         handler = new org.exolab.castor.xml.XMLFieldHandler() {
 821             public java.lang.Object getValue( java.lang.Object object )
 822                 throws IllegalStateException
 823             {
 824                 Annotation target = (Annotation) object;
 825                 return target.getThresholdLine();
 826             }
 827             public void setValue( java.lang.Object object, java.lang.Object value)
 828                 throws IllegalStateException, IllegalArgumentException
 829             {
 830                 try {
 831                     Annotation target = (Annotation) object;
 832                     target.setThresholdLine( (jalview.schemabinding.version2.ThresholdLine) value);
 833                 } catch (java.lang.Exception ex) {
 834                     throw new IllegalStateException(ex.toString());
 835                 }
 836             }
 837             public java.lang.Object newInstance(java.lang.Object parent) {
 838                 return new jalview.schemabinding.version2.ThresholdLine();
 839             }
 840         };
 841         desc.setHandler(handler);
 842         desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
 843         desc.setMultivalued(false);
 844         addFieldDescriptor(desc);
 845
 846         //-- validation code for: _thresholdLine
 847         fieldValidator = new org.exolab.castor.xml.FieldValidator();
 848         { //-- local scope
 849         }
 850         desc.setValidator(fieldValidator);
 851     }
 852
 853
 854       //-----------/
 855      //- Methods -/
 856     //-----------/
 857
 858     /**
 859      * Method getAccessMode.
 860      *
 861      * @return the access mode specified for this class.
 862      */
 863     public org.exolab.castor.mapping.AccessMode getAccessMode(
 864     ) {
 865         return null;
 866     }
 867
 868     /**
 869      * Method getIdentity.
 870      *
 871      * @return the identity field, null if this class has no
 872      * identity.
 873      */
 874     public org.exolab.castor.mapping.FieldDescriptor getIdentity(
 875     ) {
 876         return super.getIdentity();
 877     }
 878
 879     /**
 880      * Method getJavaClass.
 881      *
 882      * @return the Java class represented by this descriptor.
 883      */
 884     public java.lang.Class getJavaClass(
 885     ) {
 886         return jalview.schemabinding.version2.Annotation.class;
 887     }
 888
 889     /**
 890      * Method getNameSpacePrefix.
 891      *
 892      * @return the namespace prefix to use when marshaling as XML.
 893      */
 894     public java.lang.String getNameSpacePrefix(
 895     ) {
 896         return _nsPrefix;
 897     }
 898
 899     /**
 900      * Method getNameSpaceURI.
 901      *
 902      * @return the namespace URI used when marshaling and
 903      * unmarshaling as XML.
 904      */
 905     public java.lang.String getNameSpaceURI(
 906     ) {
 907         return _nsURI;
 908     }
 909
 910     /**
 911      * Method getValidator.
 912      *
 913      * @return a specific validator for the class described by this
 914      * ClassDescriptor.
 915      */
 916     public org.exolab.castor.xml.TypeValidator getValidator(
 917     ) {
 918         return this;
 919     }
 920
 921     /**
 922      * Method getXMLName.
 923      *
 924      * @return the XML Name for the Class being described.
 925      */
 926     public java.lang.String getXMLName(
 927     ) {
 928         return _xmlName;
 929     }
 930
 931     /**
 932      * Method isElementDefinition.
 933      *
 934      * @return true if XML schema definition of this Class is that
 935      * of a global
 936      * element or element with anonymous type definition.
 937      */
 938     public boolean isElementDefinition(
 939     ) {
 940         return _elementDefinition;
 941     }
 942
 943 }