2 * This class was automatically generated with
3 * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
8 package jalview.schemabinding.version2.descriptors;
10 //---------------------------------/
11 //- Imported classes and packages -/
12 //---------------------------------/
14 import jalview.schemabinding.version2.Annotation;
17 * Class AnnotationDescriptor.
19 * @version $Revision$ $Date$
21 public class AnnotationDescriptor extends
22 org.exolab.castor.xml.util.XMLClassDescriptorImpl
25 // --------------------------/
26 // - Class/Member Variables -/
27 // --------------------------/
30 * Field _elementDefinition.
32 private boolean _elementDefinition;
37 private java.lang.String _nsPrefix;
42 private java.lang.String _nsURI;
47 private java.lang.String _xmlName;
53 public AnnotationDescriptor()
56 _nsURI = "www.vamsas.ac.uk/jalview/version2";
57 _xmlName = "Annotation";
58 _elementDefinition = true;
60 // -- set grouping compositor
61 setCompositorAsSequence();
62 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
63 org.exolab.castor.mapping.FieldHandler handler = null;
64 org.exolab.castor.xml.FieldValidator fieldValidator = null;
65 // -- initialize attribute descriptors
68 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
69 java.lang.Boolean.TYPE, "_graph", "graph",
70 org.exolab.castor.xml.NodeType.Attribute);
71 handler = new org.exolab.castor.xml.XMLFieldHandler()
73 public java.lang.Object getValue(java.lang.Object object)
74 throws IllegalStateException
76 Annotation target = (Annotation) object;
77 if (!target.hasGraph())
81 return (target.getGraph() ? java.lang.Boolean.TRUE
82 : java.lang.Boolean.FALSE);
85 public void setValue(java.lang.Object object, java.lang.Object value)
86 throws IllegalStateException, IllegalArgumentException
90 Annotation target = (Annotation) object;
91 // ignore null values for non optional primitives
97 target.setGraph(((java.lang.Boolean) value).booleanValue());
98 } catch (java.lang.Exception ex)
100 throw new IllegalStateException(ex.toString());
104 public java.lang.Object newInstance(java.lang.Object parent)
109 desc.setHandler(handler);
110 desc.setRequired(true);
111 desc.setMultivalued(false);
112 addFieldDescriptor(desc);
114 // -- validation code for: _graph
115 fieldValidator = new org.exolab.castor.xml.FieldValidator();
116 fieldValidator.setMinOccurs(1);
118 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
119 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
120 fieldValidator.setValidator(typeValidator);
122 desc.setValidator(fieldValidator);
124 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
125 java.lang.Integer.TYPE, "_graphType", "graphType",
126 org.exolab.castor.xml.NodeType.Attribute);
127 handler = new org.exolab.castor.xml.XMLFieldHandler()
129 public java.lang.Object getValue(java.lang.Object object)
130 throws IllegalStateException
132 Annotation target = (Annotation) object;
133 if (!target.hasGraphType())
137 return new java.lang.Integer(target.getGraphType());
140 public void setValue(java.lang.Object object, java.lang.Object value)
141 throws IllegalStateException, IllegalArgumentException
145 Annotation target = (Annotation) object;
146 // if null, use delete method for optional primitives
149 target.deleteGraphType();
152 target.setGraphType(((java.lang.Integer) value).intValue());
153 } catch (java.lang.Exception ex)
155 throw new IllegalStateException(ex.toString());
159 public java.lang.Object newInstance(java.lang.Object parent)
164 desc.setHandler(handler);
165 desc.setMultivalued(false);
166 addFieldDescriptor(desc);
168 // -- validation code for: _graphType
169 fieldValidator = new org.exolab.castor.xml.FieldValidator();
171 org.exolab.castor.xml.validators.IntValidator typeValidator;
172 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
173 fieldValidator.setValidator(typeValidator);
174 typeValidator.setMinInclusive(-2147483648);
175 typeValidator.setMaxInclusive(2147483647);
177 desc.setValidator(fieldValidator);
179 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
180 java.lang.String.class, "_sequenceRef", "sequenceRef",
181 org.exolab.castor.xml.NodeType.Attribute);
182 desc.setImmutable(true);
183 handler = new org.exolab.castor.xml.XMLFieldHandler()
185 public java.lang.Object getValue(java.lang.Object object)
186 throws IllegalStateException
188 Annotation target = (Annotation) object;
189 return target.getSequenceRef();
192 public void setValue(java.lang.Object object, java.lang.Object value)
193 throws IllegalStateException, IllegalArgumentException
197 Annotation target = (Annotation) object;
198 target.setSequenceRef((java.lang.String) value);
199 } catch (java.lang.Exception ex)
201 throw new IllegalStateException(ex.toString());
205 public java.lang.Object newInstance(java.lang.Object parent)
210 desc.setHandler(handler);
211 desc.setMultivalued(false);
212 addFieldDescriptor(desc);
214 // -- validation code for: _sequenceRef
215 fieldValidator = new org.exolab.castor.xml.FieldValidator();
217 org.exolab.castor.xml.validators.StringValidator typeValidator;
218 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
219 fieldValidator.setValidator(typeValidator);
220 typeValidator.setWhiteSpace("preserve");
222 desc.setValidator(fieldValidator);
224 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
225 java.lang.String.class, "_groupRef", "groupRef",
226 org.exolab.castor.xml.NodeType.Attribute);
227 desc.setImmutable(true);
228 handler = new org.exolab.castor.xml.XMLFieldHandler()
230 public java.lang.Object getValue(java.lang.Object object)
231 throws IllegalStateException
233 Annotation target = (Annotation) object;
234 return target.getGroupRef();
237 public void setValue(java.lang.Object object, java.lang.Object value)
238 throws IllegalStateException, IllegalArgumentException
242 Annotation target = (Annotation) object;
243 target.setGroupRef((java.lang.String) value);
244 } catch (java.lang.Exception ex)
246 throw new IllegalStateException(ex.toString());
250 public java.lang.Object newInstance(java.lang.Object parent)
255 desc.setHandler(handler);
256 desc.setMultivalued(false);
257 addFieldDescriptor(desc);
259 // -- validation code for: _groupRef
260 fieldValidator = new org.exolab.castor.xml.FieldValidator();
262 org.exolab.castor.xml.validators.StringValidator typeValidator;
263 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
264 fieldValidator.setValidator(typeValidator);
265 typeValidator.setWhiteSpace("preserve");
267 desc.setValidator(fieldValidator);
269 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
270 java.lang.Integer.TYPE, "_graphColour", "graphColour",
271 org.exolab.castor.xml.NodeType.Attribute);
272 handler = new org.exolab.castor.xml.XMLFieldHandler()
274 public java.lang.Object getValue(java.lang.Object object)
275 throws IllegalStateException
277 Annotation target = (Annotation) object;
278 if (!target.hasGraphColour())
282 return new java.lang.Integer(target.getGraphColour());
285 public void setValue(java.lang.Object object, java.lang.Object value)
286 throws IllegalStateException, IllegalArgumentException
290 Annotation target = (Annotation) object;
291 // if null, use delete method for optional primitives
294 target.deleteGraphColour();
297 target.setGraphColour(((java.lang.Integer) value).intValue());
298 } catch (java.lang.Exception ex)
300 throw new IllegalStateException(ex.toString());
304 public java.lang.Object newInstance(java.lang.Object parent)
309 desc.setHandler(handler);
310 desc.setMultivalued(false);
311 addFieldDescriptor(desc);
313 // -- validation code for: _graphColour
314 fieldValidator = new org.exolab.castor.xml.FieldValidator();
316 org.exolab.castor.xml.validators.IntValidator typeValidator;
317 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
318 fieldValidator.setValidator(typeValidator);
319 typeValidator.setMinInclusive(-2147483648);
320 typeValidator.setMaxInclusive(2147483647);
322 desc.setValidator(fieldValidator);
324 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
325 java.lang.Integer.TYPE, "_graphGroup", "graphGroup",
326 org.exolab.castor.xml.NodeType.Attribute);
327 handler = new org.exolab.castor.xml.XMLFieldHandler()
329 public java.lang.Object getValue(java.lang.Object object)
330 throws IllegalStateException
332 Annotation target = (Annotation) object;
333 if (!target.hasGraphGroup())
337 return new java.lang.Integer(target.getGraphGroup());
340 public void setValue(java.lang.Object object, java.lang.Object value)
341 throws IllegalStateException, IllegalArgumentException
345 Annotation target = (Annotation) object;
346 // if null, use delete method for optional primitives
349 target.deleteGraphGroup();
352 target.setGraphGroup(((java.lang.Integer) value).intValue());
353 } catch (java.lang.Exception ex)
355 throw new IllegalStateException(ex.toString());
359 public java.lang.Object newInstance(java.lang.Object parent)
364 desc.setHandler(handler);
365 desc.setMultivalued(false);
366 addFieldDescriptor(desc);
368 // -- validation code for: _graphGroup
369 fieldValidator = new org.exolab.castor.xml.FieldValidator();
371 org.exolab.castor.xml.validators.IntValidator typeValidator;
372 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
373 fieldValidator.setValidator(typeValidator);
374 typeValidator.setMinInclusive(-2147483648);
375 typeValidator.setMaxInclusive(2147483647);
377 desc.setValidator(fieldValidator);
379 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
380 java.lang.Integer.TYPE, "_graphHeight", "graphHeight",
381 org.exolab.castor.xml.NodeType.Attribute);
382 handler = new org.exolab.castor.xml.XMLFieldHandler()
384 public java.lang.Object getValue(java.lang.Object object)
385 throws IllegalStateException
387 Annotation target = (Annotation) object;
388 if (!target.hasGraphHeight())
392 return new java.lang.Integer(target.getGraphHeight());
395 public void setValue(java.lang.Object object, java.lang.Object value)
396 throws IllegalStateException, IllegalArgumentException
400 Annotation target = (Annotation) object;
401 // if null, use delete method for optional primitives
404 target.deleteGraphHeight();
407 target.setGraphHeight(((java.lang.Integer) value).intValue());
408 } catch (java.lang.Exception ex)
410 throw new IllegalStateException(ex.toString());
414 public java.lang.Object newInstance(java.lang.Object parent)
419 desc.setHandler(handler);
420 desc.setMultivalued(false);
421 addFieldDescriptor(desc);
423 // -- validation code for: _graphHeight
424 fieldValidator = new org.exolab.castor.xml.FieldValidator();
426 org.exolab.castor.xml.validators.IntValidator typeValidator;
427 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
428 fieldValidator.setValidator(typeValidator);
429 typeValidator.setMinInclusive(-2147483648);
430 typeValidator.setMaxInclusive(2147483647);
432 desc.setValidator(fieldValidator);
434 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
435 java.lang.String.class, "_id", "id",
436 org.exolab.castor.xml.NodeType.Attribute);
437 desc.setImmutable(true);
438 handler = new org.exolab.castor.xml.XMLFieldHandler()
440 public java.lang.Object getValue(java.lang.Object object)
441 throws IllegalStateException
443 Annotation target = (Annotation) object;
444 return target.getId();
447 public void setValue(java.lang.Object object, java.lang.Object value)
448 throws IllegalStateException, IllegalArgumentException
452 Annotation target = (Annotation) object;
453 target.setId((java.lang.String) value);
454 } catch (java.lang.Exception ex)
456 throw new IllegalStateException(ex.toString());
460 public java.lang.Object newInstance(java.lang.Object parent)
465 desc.setHandler(handler);
466 desc.setMultivalued(false);
467 addFieldDescriptor(desc);
469 // -- validation code for: _id
470 fieldValidator = new org.exolab.castor.xml.FieldValidator();
472 org.exolab.castor.xml.validators.StringValidator typeValidator;
473 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
474 fieldValidator.setValidator(typeValidator);
475 typeValidator.setWhiteSpace("preserve");
477 desc.setValidator(fieldValidator);
479 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
480 java.lang.Boolean.TYPE, "_scoreOnly", "scoreOnly",
481 org.exolab.castor.xml.NodeType.Attribute);
482 handler = new org.exolab.castor.xml.XMLFieldHandler()
484 public java.lang.Object getValue(java.lang.Object object)
485 throws IllegalStateException
487 Annotation target = (Annotation) object;
488 if (!target.hasScoreOnly())
492 return (target.getScoreOnly() ? java.lang.Boolean.TRUE
493 : java.lang.Boolean.FALSE);
496 public void setValue(java.lang.Object object, java.lang.Object value)
497 throws IllegalStateException, IllegalArgumentException
501 Annotation target = (Annotation) object;
502 // if null, use delete method for optional primitives
505 target.deleteScoreOnly();
508 target.setScoreOnly(((java.lang.Boolean) value).booleanValue());
509 } catch (java.lang.Exception ex)
511 throw new IllegalStateException(ex.toString());
515 public java.lang.Object newInstance(java.lang.Object parent)
520 desc.setHandler(handler);
521 desc.setMultivalued(false);
522 addFieldDescriptor(desc);
524 // -- validation code for: _scoreOnly
525 fieldValidator = new org.exolab.castor.xml.FieldValidator();
527 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
528 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
529 fieldValidator.setValidator(typeValidator);
531 desc.setValidator(fieldValidator);
533 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
534 java.lang.Double.TYPE, "_score", "score",
535 org.exolab.castor.xml.NodeType.Attribute);
536 handler = new org.exolab.castor.xml.XMLFieldHandler()
538 public java.lang.Object getValue(java.lang.Object object)
539 throws IllegalStateException
541 Annotation target = (Annotation) object;
542 if (!target.hasScore())
546 return new java.lang.Double(target.getScore());
549 public void setValue(java.lang.Object object, java.lang.Object value)
550 throws IllegalStateException, IllegalArgumentException
554 Annotation target = (Annotation) object;
555 // if null, use delete method for optional primitives
558 target.deleteScore();
561 target.setScore(((java.lang.Double) value).doubleValue());
562 } catch (java.lang.Exception ex)
564 throw new IllegalStateException(ex.toString());
568 public java.lang.Object newInstance(java.lang.Object parent)
573 desc.setHandler(handler);
574 desc.setMultivalued(false);
575 addFieldDescriptor(desc);
577 // -- validation code for: _score
578 fieldValidator = new org.exolab.castor.xml.FieldValidator();
580 org.exolab.castor.xml.validators.DoubleValidator typeValidator;
581 typeValidator = new org.exolab.castor.xml.validators.DoubleValidator();
582 fieldValidator.setValidator(typeValidator);
583 typeValidator.setMinInclusive(-1.7976931348623157E308);
584 typeValidator.setMaxInclusive(1.7976931348623157E308);
586 desc.setValidator(fieldValidator);
588 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
589 java.lang.Boolean.TYPE, "_visible", "visible",
590 org.exolab.castor.xml.NodeType.Attribute);
591 handler = new org.exolab.castor.xml.XMLFieldHandler()
593 public java.lang.Object getValue(java.lang.Object object)
594 throws IllegalStateException
596 Annotation target = (Annotation) object;
597 if (!target.hasVisible())
601 return (target.getVisible() ? java.lang.Boolean.TRUE
602 : java.lang.Boolean.FALSE);
605 public void setValue(java.lang.Object object, java.lang.Object value)
606 throws IllegalStateException, IllegalArgumentException
610 Annotation target = (Annotation) object;
611 // if null, use delete method for optional primitives
614 target.deleteVisible();
617 target.setVisible(((java.lang.Boolean) value).booleanValue());
618 } catch (java.lang.Exception ex)
620 throw new IllegalStateException(ex.toString());
624 public java.lang.Object newInstance(java.lang.Object parent)
629 desc.setHandler(handler);
630 desc.setMultivalued(false);
631 addFieldDescriptor(desc);
633 // -- validation code for: _visible
634 fieldValidator = new org.exolab.castor.xml.FieldValidator();
636 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
637 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
638 fieldValidator.setValidator(typeValidator);
640 desc.setValidator(fieldValidator);
641 // -- _centreColLabels
642 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
643 java.lang.Boolean.TYPE, "_centreColLabels", "centreColLabels",
644 org.exolab.castor.xml.NodeType.Attribute);
645 handler = new org.exolab.castor.xml.XMLFieldHandler()
647 public java.lang.Object getValue(java.lang.Object object)
648 throws IllegalStateException
650 Annotation target = (Annotation) object;
651 if (!target.hasCentreColLabels())
655 return (target.getCentreColLabels() ? java.lang.Boolean.TRUE
656 : java.lang.Boolean.FALSE);
659 public void setValue(java.lang.Object object, java.lang.Object value)
660 throws IllegalStateException, IllegalArgumentException
664 Annotation target = (Annotation) object;
665 // if null, use delete method for optional primitives
668 target.deleteCentreColLabels();
671 target.setCentreColLabels(((java.lang.Boolean) value)
673 } catch (java.lang.Exception ex)
675 throw new IllegalStateException(ex.toString());
679 public java.lang.Object newInstance(java.lang.Object parent)
684 desc.setHandler(handler);
685 desc.setMultivalued(false);
686 addFieldDescriptor(desc);
688 // -- validation code for: _centreColLabels
689 fieldValidator = new org.exolab.castor.xml.FieldValidator();
691 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
692 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
693 fieldValidator.setValidator(typeValidator);
695 desc.setValidator(fieldValidator);
696 // -- _scaleColLabels
697 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
698 java.lang.Boolean.TYPE, "_scaleColLabels", "scaleColLabels",
699 org.exolab.castor.xml.NodeType.Attribute);
700 handler = new org.exolab.castor.xml.XMLFieldHandler()
702 public java.lang.Object getValue(java.lang.Object object)
703 throws IllegalStateException
705 Annotation target = (Annotation) object;
706 if (!target.hasScaleColLabels())
710 return (target.getScaleColLabels() ? java.lang.Boolean.TRUE
711 : java.lang.Boolean.FALSE);
714 public void setValue(java.lang.Object object, java.lang.Object value)
715 throws IllegalStateException, IllegalArgumentException
719 Annotation target = (Annotation) object;
720 // if null, use delete method for optional primitives
723 target.deleteScaleColLabels();
726 target.setScaleColLabels(((java.lang.Boolean) value)
728 } catch (java.lang.Exception ex)
730 throw new IllegalStateException(ex.toString());
734 public java.lang.Object newInstance(java.lang.Object parent)
739 desc.setHandler(handler);
740 desc.setMultivalued(false);
741 addFieldDescriptor(desc);
743 // -- validation code for: _scaleColLabels
744 fieldValidator = new org.exolab.castor.xml.FieldValidator();
746 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
747 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
748 fieldValidator.setValidator(typeValidator);
750 desc.setValidator(fieldValidator);
751 // -- _showAllColLabels
752 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
753 java.lang.Boolean.TYPE, "_showAllColLabels",
754 "showAllColLabels", org.exolab.castor.xml.NodeType.Attribute);
755 handler = new org.exolab.castor.xml.XMLFieldHandler()
757 public java.lang.Object getValue(java.lang.Object object)
758 throws IllegalStateException
760 Annotation target = (Annotation) object;
761 if (!target.hasShowAllColLabels())
765 return (target.getShowAllColLabels() ? java.lang.Boolean.TRUE
766 : java.lang.Boolean.FALSE);
769 public void setValue(java.lang.Object object, java.lang.Object value)
770 throws IllegalStateException, IllegalArgumentException
774 Annotation target = (Annotation) object;
775 // if null, use delete method for optional primitives
778 target.deleteShowAllColLabels();
781 target.setShowAllColLabels(((java.lang.Boolean) value)
783 } catch (java.lang.Exception ex)
785 throw new IllegalStateException(ex.toString());
789 public java.lang.Object newInstance(java.lang.Object parent)
794 desc.setHandler(handler);
795 desc.setMultivalued(false);
796 addFieldDescriptor(desc);
798 // -- validation code for: _showAllColLabels
799 fieldValidator = new org.exolab.castor.xml.FieldValidator();
801 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
802 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
803 fieldValidator.setValidator(typeValidator);
805 desc.setValidator(fieldValidator);
806 // -- _autoCalculated
807 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
808 java.lang.Boolean.TYPE, "_autoCalculated", "autoCalculated",
809 org.exolab.castor.xml.NodeType.Attribute);
810 handler = new org.exolab.castor.xml.XMLFieldHandler()
812 public java.lang.Object getValue(java.lang.Object object)
813 throws IllegalStateException
815 Annotation target = (Annotation) object;
816 if (!target.hasAutoCalculated())
820 return (target.getAutoCalculated() ? java.lang.Boolean.TRUE
821 : java.lang.Boolean.FALSE);
824 public void setValue(java.lang.Object object, java.lang.Object value)
825 throws IllegalStateException, IllegalArgumentException
829 Annotation target = (Annotation) object;
830 // if null, use delete method for optional primitives
833 target.deleteAutoCalculated();
836 target.setAutoCalculated(((java.lang.Boolean) value)
838 } catch (java.lang.Exception ex)
840 throw new IllegalStateException(ex.toString());
844 public java.lang.Object newInstance(java.lang.Object parent)
849 desc.setHandler(handler);
850 desc.setMultivalued(false);
851 addFieldDescriptor(desc);
853 // -- validation code for: _autoCalculated
854 fieldValidator = new org.exolab.castor.xml.FieldValidator();
856 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
857 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
858 fieldValidator.setValidator(typeValidator);
860 desc.setValidator(fieldValidator);
861 // -- _belowAlignment
862 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
863 java.lang.Boolean.TYPE, "_belowAlignment", "belowAlignment",
864 org.exolab.castor.xml.NodeType.Attribute);
865 handler = new org.exolab.castor.xml.XMLFieldHandler()
867 public java.lang.Object getValue(java.lang.Object object)
868 throws IllegalStateException
870 Annotation target = (Annotation) object;
871 if (!target.hasBelowAlignment())
875 return (target.getBelowAlignment() ? java.lang.Boolean.TRUE
876 : java.lang.Boolean.FALSE);
879 public void setValue(java.lang.Object object, java.lang.Object value)
880 throws IllegalStateException, IllegalArgumentException
884 Annotation target = (Annotation) object;
885 // if null, use delete method for optional primitives
888 target.deleteBelowAlignment();
891 target.setBelowAlignment(((java.lang.Boolean) value)
893 } catch (java.lang.Exception ex)
895 throw new IllegalStateException(ex.toString());
899 public java.lang.Object newInstance(java.lang.Object parent)
904 desc.setHandler(handler);
905 desc.setMultivalued(false);
906 addFieldDescriptor(desc);
908 // -- validation code for: _belowAlignment
909 fieldValidator = new org.exolab.castor.xml.FieldValidator();
911 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
912 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
913 fieldValidator.setValidator(typeValidator);
915 desc.setValidator(fieldValidator);
917 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
918 java.lang.String.class, "_calcId", "calcId",
919 org.exolab.castor.xml.NodeType.Attribute);
920 desc.setImmutable(true);
921 handler = new org.exolab.castor.xml.XMLFieldHandler()
923 public java.lang.Object getValue(java.lang.Object object)
924 throws IllegalStateException
926 Annotation target = (Annotation) object;
927 return target.getCalcId();
930 public void setValue(java.lang.Object object, java.lang.Object value)
931 throws IllegalStateException, IllegalArgumentException
935 Annotation target = (Annotation) object;
936 target.setCalcId((java.lang.String) value);
937 } catch (java.lang.Exception ex)
939 throw new IllegalStateException(ex.toString());
943 public java.lang.Object newInstance(java.lang.Object parent)
948 desc.setHandler(handler);
949 desc.setMultivalued(false);
950 addFieldDescriptor(desc);
952 // -- validation code for: _calcId
953 fieldValidator = new org.exolab.castor.xml.FieldValidator();
955 org.exolab.castor.xml.validators.StringValidator typeValidator;
956 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
957 fieldValidator.setValidator(typeValidator);
958 typeValidator.setWhiteSpace("preserve");
960 desc.setValidator(fieldValidator);
961 // -- initialize element descriptors
963 // -- _annotationElementList
964 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
965 jalview.schemabinding.version2.AnnotationElement.class,
966 "_annotationElementList", "annotationElement",
967 org.exolab.castor.xml.NodeType.Element);
968 handler = new org.exolab.castor.xml.XMLFieldHandler()
970 public java.lang.Object getValue(java.lang.Object object)
971 throws IllegalStateException
973 Annotation target = (Annotation) object;
974 return target.getAnnotationElement();
977 public void setValue(java.lang.Object object, java.lang.Object value)
978 throws IllegalStateException, IllegalArgumentException
982 Annotation target = (Annotation) object;
983 target.addAnnotationElement((jalview.schemabinding.version2.AnnotationElement) value);
984 } catch (java.lang.Exception ex)
986 throw new IllegalStateException(ex.toString());
990 public void resetValue(Object object) throws IllegalStateException,
991 IllegalArgumentException
995 Annotation target = (Annotation) object;
996 target.removeAllAnnotationElement();
997 } catch (java.lang.Exception ex)
999 throw new IllegalStateException(ex.toString());
1003 public java.lang.Object newInstance(java.lang.Object parent)
1005 return new jalview.schemabinding.version2.AnnotationElement();
1008 desc.setHandler(handler);
1009 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
1010 desc.setMultivalued(true);
1011 addFieldDescriptor(desc);
1013 // -- validation code for: _annotationElementList
1014 fieldValidator = new org.exolab.castor.xml.FieldValidator();
1015 fieldValidator.setMinOccurs(0);
1018 desc.setValidator(fieldValidator);
1020 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
1021 java.lang.String.class, "_label", "label",
1022 org.exolab.castor.xml.NodeType.Element);
1023 desc.setImmutable(true);
1024 handler = new org.exolab.castor.xml.XMLFieldHandler()
1026 public java.lang.Object getValue(java.lang.Object object)
1027 throws IllegalStateException
1029 Annotation target = (Annotation) object;
1030 return target.getLabel();
1033 public void setValue(java.lang.Object object, java.lang.Object value)
1034 throws IllegalStateException, IllegalArgumentException
1038 Annotation target = (Annotation) object;
1039 target.setLabel((java.lang.String) value);
1040 } catch (java.lang.Exception ex)
1042 throw new IllegalStateException(ex.toString());
1046 public java.lang.Object newInstance(java.lang.Object parent)
1051 desc.setHandler(handler);
1052 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
1053 desc.setRequired(true);
1054 desc.setMultivalued(false);
1055 addFieldDescriptor(desc);
1057 // -- validation code for: _label
1058 fieldValidator = new org.exolab.castor.xml.FieldValidator();
1059 fieldValidator.setMinOccurs(1);
1061 org.exolab.castor.xml.validators.StringValidator typeValidator;
1062 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
1063 fieldValidator.setValidator(typeValidator);
1064 typeValidator.setWhiteSpace("preserve");
1066 desc.setValidator(fieldValidator);
1068 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
1069 java.lang.String.class, "_description", "description",
1070 org.exolab.castor.xml.NodeType.Element);
1071 desc.setImmutable(true);
1072 handler = new org.exolab.castor.xml.XMLFieldHandler()
1074 public java.lang.Object getValue(java.lang.Object object)
1075 throws IllegalStateException
1077 Annotation target = (Annotation) object;
1078 return target.getDescription();
1081 public void setValue(java.lang.Object object, java.lang.Object value)
1082 throws IllegalStateException, IllegalArgumentException
1086 Annotation target = (Annotation) object;
1087 target.setDescription((java.lang.String) value);
1088 } catch (java.lang.Exception ex)
1090 throw new IllegalStateException(ex.toString());
1094 public java.lang.Object newInstance(java.lang.Object parent)
1099 desc.setHandler(handler);
1100 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
1101 desc.setMultivalued(false);
1102 addFieldDescriptor(desc);
1104 // -- validation code for: _description
1105 fieldValidator = new org.exolab.castor.xml.FieldValidator();
1107 org.exolab.castor.xml.validators.StringValidator typeValidator;
1108 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
1109 fieldValidator.setValidator(typeValidator);
1110 typeValidator.setWhiteSpace("preserve");
1112 desc.setValidator(fieldValidator);
1113 // -- _thresholdLine
1114 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
1115 jalview.schemabinding.version2.ThresholdLine.class,
1116 "_thresholdLine", "thresholdLine",
1117 org.exolab.castor.xml.NodeType.Element);
1118 handler = new org.exolab.castor.xml.XMLFieldHandler()
1120 public java.lang.Object getValue(java.lang.Object object)
1121 throws IllegalStateException
1123 Annotation target = (Annotation) object;
1124 return target.getThresholdLine();
1127 public void setValue(java.lang.Object object, java.lang.Object value)
1128 throws IllegalStateException, IllegalArgumentException
1132 Annotation target = (Annotation) object;
1133 target.setThresholdLine((jalview.schemabinding.version2.ThresholdLine) value);
1134 } catch (java.lang.Exception ex)
1136 throw new IllegalStateException(ex.toString());
1140 public java.lang.Object newInstance(java.lang.Object parent)
1142 return new jalview.schemabinding.version2.ThresholdLine();
1145 desc.setHandler(handler);
1146 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
1147 desc.setMultivalued(false);
1148 addFieldDescriptor(desc);
1150 // -- validation code for: _thresholdLine
1151 fieldValidator = new org.exolab.castor.xml.FieldValidator();
1154 desc.setValidator(fieldValidator);
1156 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
1157 jalview.schemabinding.version2.Property.class, "_propertyList",
1158 "property", org.exolab.castor.xml.NodeType.Element);
1159 handler = new org.exolab.castor.xml.XMLFieldHandler()
1161 public java.lang.Object getValue(java.lang.Object object)
1162 throws IllegalStateException
1164 Annotation target = (Annotation) object;
1165 return target.getProperty();
1168 public void setValue(java.lang.Object object, java.lang.Object value)
1169 throws IllegalStateException, IllegalArgumentException
1173 Annotation target = (Annotation) object;
1174 target.addProperty((jalview.schemabinding.version2.Property) value);
1175 } catch (java.lang.Exception ex)
1177 throw new IllegalStateException(ex.toString());
1181 public void resetValue(Object object) throws IllegalStateException,
1182 IllegalArgumentException
1186 Annotation target = (Annotation) object;
1187 target.removeAllProperty();
1188 } catch (java.lang.Exception ex)
1190 throw new IllegalStateException(ex.toString());
1194 public java.lang.Object newInstance(java.lang.Object parent)
1196 return new jalview.schemabinding.version2.Property();
1199 desc.setHandler(handler);
1200 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
1201 desc.setMultivalued(true);
1202 addFieldDescriptor(desc);
1204 // -- validation code for: _propertyList
1205 fieldValidator = new org.exolab.castor.xml.FieldValidator();
1206 fieldValidator.setMinOccurs(0);
1209 desc.setValidator(fieldValidator);
1217 * Method getAccessMode.
1219 * @return the access mode specified for this class.
1221 public org.exolab.castor.mapping.AccessMode getAccessMode()
1227 * Method getIdentity.
1229 * @return the identity field, null if this class has no identity.
1231 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
1233 return super.getIdentity();
1237 * Method getJavaClass.
1239 * @return the Java class represented by this descriptor.
1241 public java.lang.Class getJavaClass()
1243 return jalview.schemabinding.version2.Annotation.class;
1247 * Method getNameSpacePrefix.
1249 * @return the namespace prefix to use when marshaling as XML.
1251 public java.lang.String getNameSpacePrefix()
1257 * Method getNameSpaceURI.
1259 * @return the namespace URI used when marshaling and unmarshaling as XML.
1261 public java.lang.String getNameSpaceURI()
1267 * Method getValidator.
1269 * @return a specific validator for the class described by this
1272 public org.exolab.castor.xml.TypeValidator getValidator()
1278 * Method getXMLName.
1280 * @return the XML Name for the Class being described.
1282 public java.lang.String getXMLName()
1288 * Method isElementDefinition.
1290 * @return true if XML schema definition of this Class is that of a global
1291 * element or element with anonymous type definition.
1293 public boolean isElementDefinition()
1295 return _elementDefinition;