2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
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3 * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.schemabinding.version2.descriptors;
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21 //---------------------------------/
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22 //- Imported classes and packages -/
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23 //---------------------------------/
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25 import jalview.schemabinding.version2.Annotation;
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28 * Class AnnotationDescriptor.
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30 * @version $Revision$ $Date$
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32 public class AnnotationDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
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35 //--------------------------/
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36 //- Class/Member Variables -/
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37 //--------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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64 public AnnotationDescriptor() {
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66 _nsURI = "www.vamsas.ac.uk/jalview/version2";
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67 _xmlName = "Annotation";
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68 _elementDefinition = true;
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70 //-- set grouping compositor
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71 setCompositorAsSequence();
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 //-- initialize attribute descriptors
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78 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_graph", "graph", org.exolab.castor.xml.NodeType.Attribute);
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79 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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80 public java.lang.Object getValue( java.lang.Object object )
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81 throws IllegalStateException
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83 Annotation target = (Annotation) object;
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84 if (!target.hasGraph()) { return null; }
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85 return (target.getGraph() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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87 public void setValue( java.lang.Object object, java.lang.Object value)
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88 throws IllegalStateException, IllegalArgumentException
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91 Annotation target = (Annotation) object;
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92 // ignore null values for non optional primitives
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93 if (value == null) { return; }
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95 target.setGraph( ((java.lang.Boolean) value).booleanValue());
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96 } catch (java.lang.Exception ex) {
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97 throw new IllegalStateException(ex.toString());
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100 public java.lang.Object newInstance(java.lang.Object parent) {
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104 desc.setHandler(handler);
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105 desc.setRequired(true);
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106 desc.setMultivalued(false);
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107 addFieldDescriptor(desc);
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109 //-- validation code for: _graph
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110 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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111 fieldValidator.setMinOccurs(1);
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113 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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114 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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115 fieldValidator.setValidator(typeValidator);
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117 desc.setValidator(fieldValidator);
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119 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphType", "graphType", org.exolab.castor.xml.NodeType.Attribute);
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120 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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121 public java.lang.Object getValue( java.lang.Object object )
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122 throws IllegalStateException
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124 Annotation target = (Annotation) object;
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125 if (!target.hasGraphType()) { return null; }
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126 return new java.lang.Integer(target.getGraphType());
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128 public void setValue( java.lang.Object object, java.lang.Object value)
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129 throws IllegalStateException, IllegalArgumentException
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132 Annotation target = (Annotation) object;
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133 // if null, use delete method for optional primitives
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134 if (value == null) {
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135 target.deleteGraphType();
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138 target.setGraphType( ((java.lang.Integer) value).intValue());
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139 } catch (java.lang.Exception ex) {
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140 throw new IllegalStateException(ex.toString());
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143 public java.lang.Object newInstance(java.lang.Object parent) {
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147 desc.setHandler(handler);
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148 desc.setMultivalued(false);
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149 addFieldDescriptor(desc);
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151 //-- validation code for: _graphType
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152 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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154 org.exolab.castor.xml.validators.IntValidator typeValidator;
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155 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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156 fieldValidator.setValidator(typeValidator);
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157 typeValidator.setMinInclusive(-2147483648);
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158 typeValidator.setMaxInclusive(2147483647);
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160 desc.setValidator(fieldValidator);
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162 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_sequenceRef", "sequenceRef", org.exolab.castor.xml.NodeType.Attribute);
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163 desc.setImmutable(true);
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164 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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165 public java.lang.Object getValue( java.lang.Object object )
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166 throws IllegalStateException
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168 Annotation target = (Annotation) object;
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169 return target.getSequenceRef();
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171 public void setValue( java.lang.Object object, java.lang.Object value)
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172 throws IllegalStateException, IllegalArgumentException
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175 Annotation target = (Annotation) object;
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176 target.setSequenceRef( (java.lang.String) value);
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177 } catch (java.lang.Exception ex) {
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178 throw new IllegalStateException(ex.toString());
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181 public java.lang.Object newInstance(java.lang.Object parent) {
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185 desc.setHandler(handler);
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186 desc.setMultivalued(false);
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187 addFieldDescriptor(desc);
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189 //-- validation code for: _sequenceRef
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190 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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192 org.exolab.castor.xml.validators.StringValidator typeValidator;
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193 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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194 fieldValidator.setValidator(typeValidator);
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195 typeValidator.setWhiteSpace("preserve");
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197 desc.setValidator(fieldValidator);
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199 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_groupRef", "groupRef", org.exolab.castor.xml.NodeType.Attribute);
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200 desc.setImmutable(true);
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201 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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202 public java.lang.Object getValue( java.lang.Object object )
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203 throws IllegalStateException
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205 Annotation target = (Annotation) object;
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206 return target.getGroupRef();
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208 public void setValue( java.lang.Object object, java.lang.Object value)
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209 throws IllegalStateException, IllegalArgumentException
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212 Annotation target = (Annotation) object;
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213 target.setGroupRef( (java.lang.String) value);
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214 } catch (java.lang.Exception ex) {
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215 throw new IllegalStateException(ex.toString());
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218 public java.lang.Object newInstance(java.lang.Object parent) {
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222 desc.setHandler(handler);
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223 desc.setMultivalued(false);
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224 addFieldDescriptor(desc);
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226 //-- validation code for: _groupRef
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227 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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229 org.exolab.castor.xml.validators.StringValidator typeValidator;
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230 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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231 fieldValidator.setValidator(typeValidator);
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232 typeValidator.setWhiteSpace("preserve");
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234 desc.setValidator(fieldValidator);
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236 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphColour", "graphColour", org.exolab.castor.xml.NodeType.Attribute);
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237 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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238 public java.lang.Object getValue( java.lang.Object object )
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239 throws IllegalStateException
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241 Annotation target = (Annotation) object;
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242 if (!target.hasGraphColour()) { return null; }
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243 return new java.lang.Integer(target.getGraphColour());
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245 public void setValue( java.lang.Object object, java.lang.Object value)
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246 throws IllegalStateException, IllegalArgumentException
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249 Annotation target = (Annotation) object;
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250 // if null, use delete method for optional primitives
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251 if (value == null) {
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252 target.deleteGraphColour();
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255 target.setGraphColour( ((java.lang.Integer) value).intValue());
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256 } catch (java.lang.Exception ex) {
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257 throw new IllegalStateException(ex.toString());
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260 public java.lang.Object newInstance(java.lang.Object parent) {
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264 desc.setHandler(handler);
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265 desc.setMultivalued(false);
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266 addFieldDescriptor(desc);
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268 //-- validation code for: _graphColour
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269 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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271 org.exolab.castor.xml.validators.IntValidator typeValidator;
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272 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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273 fieldValidator.setValidator(typeValidator);
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274 typeValidator.setMinInclusive(-2147483648);
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275 typeValidator.setMaxInclusive(2147483647);
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277 desc.setValidator(fieldValidator);
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279 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_graphGroup", "graphGroup", org.exolab.castor.xml.NodeType.Attribute);
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280 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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281 public java.lang.Object getValue( java.lang.Object object )
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282 throws IllegalStateException
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284 Annotation target = (Annotation) object;
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285 if (!target.hasGraphGroup()) { return null; }
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286 return new java.lang.Integer(target.getGraphGroup());
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288 public void setValue( java.lang.Object object, java.lang.Object value)
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289 throws IllegalStateException, IllegalArgumentException
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292 Annotation target = (Annotation) object;
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293 // if null, use delete method for optional primitives
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294 if (value == null) {
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295 target.deleteGraphGroup();
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298 target.setGraphGroup( ((java.lang.Integer) value).intValue());
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299 } catch (java.lang.Exception ex) {
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300 throw new IllegalStateException(ex.toString());
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303 public java.lang.Object newInstance(java.lang.Object parent) {
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307 desc.setHandler(handler);
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308 desc.setMultivalued(false);
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309 addFieldDescriptor(desc);
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311 //-- validation code for: _graphGroup
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312 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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314 org.exolab.castor.xml.validators.IntValidator typeValidator;
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315 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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316 fieldValidator.setValidator(typeValidator);
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317 typeValidator.setMinInclusive(-2147483648);
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318 typeValidator.setMaxInclusive(2147483647);
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320 desc.setValidator(fieldValidator);
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322 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
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323 desc.setImmutable(true);
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324 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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325 public java.lang.Object getValue( java.lang.Object object )
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326 throws IllegalStateException
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328 Annotation target = (Annotation) object;
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329 return target.getId();
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331 public void setValue( java.lang.Object object, java.lang.Object value)
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332 throws IllegalStateException, IllegalArgumentException
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335 Annotation target = (Annotation) object;
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336 target.setId( (java.lang.String) value);
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337 } catch (java.lang.Exception ex) {
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338 throw new IllegalStateException(ex.toString());
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341 public java.lang.Object newInstance(java.lang.Object parent) {
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345 desc.setHandler(handler);
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346 desc.setMultivalued(false);
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347 addFieldDescriptor(desc);
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349 //-- validation code for: _id
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350 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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352 org.exolab.castor.xml.validators.StringValidator typeValidator;
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353 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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354 fieldValidator.setValidator(typeValidator);
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355 typeValidator.setWhiteSpace("preserve");
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357 desc.setValidator(fieldValidator);
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359 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_scoreOnly", "scoreOnly", org.exolab.castor.xml.NodeType.Attribute);
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360 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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361 public java.lang.Object getValue( java.lang.Object object )
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362 throws IllegalStateException
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364 Annotation target = (Annotation) object;
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365 if (!target.hasScoreOnly()) { return null; }
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366 return (target.getScoreOnly() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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368 public void setValue( java.lang.Object object, java.lang.Object value)
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369 throws IllegalStateException, IllegalArgumentException
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372 Annotation target = (Annotation) object;
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373 // if null, use delete method for optional primitives
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374 if (value == null) {
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375 target.deleteScoreOnly();
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378 target.setScoreOnly( ((java.lang.Boolean) value).booleanValue());
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379 } catch (java.lang.Exception ex) {
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380 throw new IllegalStateException(ex.toString());
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383 public java.lang.Object newInstance(java.lang.Object parent) {
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387 desc.setHandler(handler);
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388 desc.setMultivalued(false);
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389 addFieldDescriptor(desc);
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391 //-- validation code for: _scoreOnly
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392 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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394 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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395 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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396 fieldValidator.setValidator(typeValidator);
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398 desc.setValidator(fieldValidator);
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400 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Double.TYPE, "_score", "score", org.exolab.castor.xml.NodeType.Attribute);
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401 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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402 public java.lang.Object getValue( java.lang.Object object )
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403 throws IllegalStateException
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405 Annotation target = (Annotation) object;
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406 if (!target.hasScore()) { return null; }
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407 return new java.lang.Double(target.getScore());
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409 public void setValue( java.lang.Object object, java.lang.Object value)
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410 throws IllegalStateException, IllegalArgumentException
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413 Annotation target = (Annotation) object;
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414 // if null, use delete method for optional primitives
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415 if (value == null) {
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416 target.deleteScore();
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419 target.setScore( ((java.lang.Double) value).doubleValue());
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420 } catch (java.lang.Exception ex) {
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421 throw new IllegalStateException(ex.toString());
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424 public java.lang.Object newInstance(java.lang.Object parent) {
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428 desc.setHandler(handler);
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429 desc.setMultivalued(false);
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430 addFieldDescriptor(desc);
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432 //-- validation code for: _score
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433 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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435 org.exolab.castor.xml.validators.DoubleValidator typeValidator;
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436 typeValidator = new org.exolab.castor.xml.validators.DoubleValidator();
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437 fieldValidator.setValidator(typeValidator);
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438 typeValidator.setMinInclusive(-1.7976931348623157E308);
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439 typeValidator.setMaxInclusive(1.7976931348623157E308);
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441 desc.setValidator(fieldValidator);
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443 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_visible", "visible", org.exolab.castor.xml.NodeType.Attribute);
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444 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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445 public java.lang.Object getValue( java.lang.Object object )
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446 throws IllegalStateException
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448 Annotation target = (Annotation) object;
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449 if (!target.hasVisible()) { return null; }
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450 return (target.getVisible() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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452 public void setValue( java.lang.Object object, java.lang.Object value)
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453 throws IllegalStateException, IllegalArgumentException
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456 Annotation target = (Annotation) object;
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457 // if null, use delete method for optional primitives
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458 if (value == null) {
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459 target.deleteVisible();
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462 target.setVisible( ((java.lang.Boolean) value).booleanValue());
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463 } catch (java.lang.Exception ex) {
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464 throw new IllegalStateException(ex.toString());
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467 public java.lang.Object newInstance(java.lang.Object parent) {
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471 desc.setHandler(handler);
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472 desc.setMultivalued(false);
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473 addFieldDescriptor(desc);
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475 //-- validation code for: _visible
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476 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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478 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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479 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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480 fieldValidator.setValidator(typeValidator);
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482 desc.setValidator(fieldValidator);
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483 //-- _centreColLabels
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484 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_centreColLabels", "centreColLabels", org.exolab.castor.xml.NodeType.Attribute);
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485 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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486 public java.lang.Object getValue( java.lang.Object object )
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487 throws IllegalStateException
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489 Annotation target = (Annotation) object;
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490 if (!target.hasCentreColLabels()) { return null; }
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491 return (target.getCentreColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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493 public void setValue( java.lang.Object object, java.lang.Object value)
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494 throws IllegalStateException, IllegalArgumentException
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497 Annotation target = (Annotation) object;
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498 // if null, use delete method for optional primitives
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499 if (value == null) {
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500 target.deleteCentreColLabels();
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503 target.setCentreColLabels( ((java.lang.Boolean) value).booleanValue());
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504 } catch (java.lang.Exception ex) {
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505 throw new IllegalStateException(ex.toString());
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508 public java.lang.Object newInstance(java.lang.Object parent) {
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512 desc.setHandler(handler);
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513 desc.setMultivalued(false);
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514 addFieldDescriptor(desc);
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516 //-- validation code for: _centreColLabels
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517 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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519 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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520 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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521 fieldValidator.setValidator(typeValidator);
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523 desc.setValidator(fieldValidator);
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524 //-- _scaleColLabels
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525 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_scaleColLabels", "scaleColLabels", org.exolab.castor.xml.NodeType.Attribute);
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526 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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527 public java.lang.Object getValue( java.lang.Object object )
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528 throws IllegalStateException
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530 Annotation target = (Annotation) object;
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531 if (!target.hasScaleColLabels()) { return null; }
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532 return (target.getScaleColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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534 public void setValue( java.lang.Object object, java.lang.Object value)
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535 throws IllegalStateException, IllegalArgumentException
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538 Annotation target = (Annotation) object;
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539 // if null, use delete method for optional primitives
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540 if (value == null) {
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541 target.deleteScaleColLabels();
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544 target.setScaleColLabels( ((java.lang.Boolean) value).booleanValue());
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545 } catch (java.lang.Exception ex) {
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546 throw new IllegalStateException(ex.toString());
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549 public java.lang.Object newInstance(java.lang.Object parent) {
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553 desc.setHandler(handler);
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554 desc.setMultivalued(false);
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555 addFieldDescriptor(desc);
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557 //-- validation code for: _scaleColLabels
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558 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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560 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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561 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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562 fieldValidator.setValidator(typeValidator);
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564 desc.setValidator(fieldValidator);
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565 //-- _showAllColLabels
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566 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_showAllColLabels", "showAllColLabels", org.exolab.castor.xml.NodeType.Attribute);
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567 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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568 public java.lang.Object getValue( java.lang.Object object )
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569 throws IllegalStateException
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571 Annotation target = (Annotation) object;
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572 if (!target.hasShowAllColLabels()) { return null; }
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573 return (target.getShowAllColLabels() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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575 public void setValue( java.lang.Object object, java.lang.Object value)
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576 throws IllegalStateException, IllegalArgumentException
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579 Annotation target = (Annotation) object;
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580 // if null, use delete method for optional primitives
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581 if (value == null) {
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582 target.deleteShowAllColLabels();
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585 target.setShowAllColLabels( ((java.lang.Boolean) value).booleanValue());
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586 } catch (java.lang.Exception ex) {
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587 throw new IllegalStateException(ex.toString());
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590 public java.lang.Object newInstance(java.lang.Object parent) {
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594 desc.setHandler(handler);
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595 desc.setMultivalued(false);
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596 addFieldDescriptor(desc);
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598 //-- validation code for: _showAllColLabels
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599 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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601 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
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602 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
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603 fieldValidator.setValidator(typeValidator);
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605 desc.setValidator(fieldValidator);
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606 //-- _autoCalculated
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607 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Boolean.TYPE, "_autoCalculated", "autoCalculated", org.exolab.castor.xml.NodeType.Attribute);
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608 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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609 public java.lang.Object getValue( java.lang.Object object )
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610 throws IllegalStateException
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612 Annotation target = (Annotation) object;
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613 if (!target.hasAutoCalculated()) { return null; }
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614 return (target.getAutoCalculated() ? java.lang.Boolean.TRUE : java.lang.Boolean.FALSE);
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616 public void setValue( java.lang.Object object, java.lang.Object value)
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617 throws IllegalStateException, IllegalArgumentException
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620 Annotation target = (Annotation) object;
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621 // if null, use delete method for optional primitives
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622 if (value == null) {
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623 target.deleteAutoCalculated();
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626 target.setAutoCalculated( ((java.lang.Boolean) value).booleanValue());
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627 } catch (java.lang.Exception ex) {
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628 throw new IllegalStateException(ex.toString());
\r
631 public java.lang.Object newInstance(java.lang.Object parent) {
\r
635 desc.setHandler(handler);
\r
636 desc.setMultivalued(false);
\r
637 addFieldDescriptor(desc);
\r
639 //-- validation code for: _autoCalculated
\r
640 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
642 org.exolab.castor.xml.validators.BooleanValidator typeValidator;
\r
643 typeValidator = new org.exolab.castor.xml.validators.BooleanValidator();
\r
644 fieldValidator.setValidator(typeValidator);
\r
646 desc.setValidator(fieldValidator);
\r
647 //-- initialize element descriptors
\r
649 //-- _annotationElementList
\r
650 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AnnotationElement.class, "_annotationElementList", "annotationElement", org.exolab.castor.xml.NodeType.Element);
\r
651 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
652 public java.lang.Object getValue( java.lang.Object object )
\r
653 throws IllegalStateException
\r
655 Annotation target = (Annotation) object;
\r
656 return target.getAnnotationElement();
\r
658 public void setValue( java.lang.Object object, java.lang.Object value)
\r
659 throws IllegalStateException, IllegalArgumentException
\r
662 Annotation target = (Annotation) object;
\r
663 target.addAnnotationElement( (jalview.schemabinding.version2.AnnotationElement) value);
\r
664 } catch (java.lang.Exception ex) {
\r
665 throw new IllegalStateException(ex.toString());
\r
668 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
\r
670 Annotation target = (Annotation) object;
\r
671 target.removeAllAnnotationElement();
\r
672 } catch (java.lang.Exception ex) {
\r
673 throw new IllegalStateException(ex.toString());
\r
676 public java.lang.Object newInstance(java.lang.Object parent) {
\r
677 return new jalview.schemabinding.version2.AnnotationElement();
\r
680 desc.setHandler(handler);
\r
681 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
\r
682 desc.setMultivalued(true);
\r
683 addFieldDescriptor(desc);
\r
685 //-- validation code for: _annotationElementList
\r
686 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
687 fieldValidator.setMinOccurs(0);
\r
690 desc.setValidator(fieldValidator);
\r
692 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_label", "label", org.exolab.castor.xml.NodeType.Element);
\r
693 desc.setImmutable(true);
\r
694 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
695 public java.lang.Object getValue( java.lang.Object object )
\r
696 throws IllegalStateException
\r
698 Annotation target = (Annotation) object;
\r
699 return target.getLabel();
\r
701 public void setValue( java.lang.Object object, java.lang.Object value)
\r
702 throws IllegalStateException, IllegalArgumentException
\r
705 Annotation target = (Annotation) object;
\r
706 target.setLabel( (java.lang.String) value);
\r
707 } catch (java.lang.Exception ex) {
\r
708 throw new IllegalStateException(ex.toString());
\r
711 public java.lang.Object newInstance(java.lang.Object parent) {
\r
715 desc.setHandler(handler);
\r
716 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
\r
717 desc.setRequired(true);
\r
718 desc.setMultivalued(false);
\r
719 addFieldDescriptor(desc);
\r
721 //-- validation code for: _label
\r
722 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
723 fieldValidator.setMinOccurs(1);
\r
725 org.exolab.castor.xml.validators.StringValidator typeValidator;
\r
726 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
\r
727 fieldValidator.setValidator(typeValidator);
\r
728 typeValidator.setWhiteSpace("preserve");
\r
730 desc.setValidator(fieldValidator);
\r
732 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element);
\r
733 desc.setImmutable(true);
\r
734 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
735 public java.lang.Object getValue( java.lang.Object object )
\r
736 throws IllegalStateException
\r
738 Annotation target = (Annotation) object;
\r
739 return target.getDescription();
\r
741 public void setValue( java.lang.Object object, java.lang.Object value)
\r
742 throws IllegalStateException, IllegalArgumentException
\r
745 Annotation target = (Annotation) object;
\r
746 target.setDescription( (java.lang.String) value);
\r
747 } catch (java.lang.Exception ex) {
\r
748 throw new IllegalStateException(ex.toString());
\r
751 public java.lang.Object newInstance(java.lang.Object parent) {
\r
755 desc.setHandler(handler);
\r
756 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
\r
757 desc.setMultivalued(false);
\r
758 addFieldDescriptor(desc);
\r
760 //-- validation code for: _description
\r
761 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
763 org.exolab.castor.xml.validators.StringValidator typeValidator;
\r
764 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
\r
765 fieldValidator.setValidator(typeValidator);
\r
766 typeValidator.setWhiteSpace("preserve");
\r
768 desc.setValidator(fieldValidator);
\r
769 //-- _thresholdLine
\r
770 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.ThresholdLine.class, "_thresholdLine", "thresholdLine", org.exolab.castor.xml.NodeType.Element);
\r
771 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
772 public java.lang.Object getValue( java.lang.Object object )
\r
773 throws IllegalStateException
\r
775 Annotation target = (Annotation) object;
\r
776 return target.getThresholdLine();
\r
778 public void setValue( java.lang.Object object, java.lang.Object value)
\r
779 throws IllegalStateException, IllegalArgumentException
\r
782 Annotation target = (Annotation) object;
\r
783 target.setThresholdLine( (jalview.schemabinding.version2.ThresholdLine) value);
\r
784 } catch (java.lang.Exception ex) {
\r
785 throw new IllegalStateException(ex.toString());
\r
788 public java.lang.Object newInstance(java.lang.Object parent) {
\r
789 return new jalview.schemabinding.version2.ThresholdLine();
\r
792 desc.setHandler(handler);
\r
793 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
\r
794 desc.setMultivalued(false);
\r
795 addFieldDescriptor(desc);
\r
797 //-- validation code for: _thresholdLine
\r
798 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
801 desc.setValidator(fieldValidator);
\r
810 * Method getAccessMode.
\r
812 * @return the access mode specified for this class.
\r
814 public org.exolab.castor.mapping.AccessMode getAccessMode(
\r
820 * Method getIdentity.
\r
822 * @return the identity field, null if this class has no
\r
825 public org.exolab.castor.mapping.FieldDescriptor getIdentity(
\r
827 return super.getIdentity();
\r
831 * Method getJavaClass.
\r
833 * @return the Java class represented by this descriptor.
\r
835 public java.lang.Class getJavaClass(
\r
837 return jalview.schemabinding.version2.Annotation.class;
\r
841 * Method getNameSpacePrefix.
\r
843 * @return the namespace prefix to use when marshaling as XML.
\r
845 public java.lang.String getNameSpacePrefix(
\r
851 * Method getNameSpaceURI.
\r
853 * @return the namespace URI used when marshaling and
\r
854 * unmarshaling as XML.
\r
856 public java.lang.String getNameSpaceURI(
\r
862 * Method getValidator.
\r
864 * @return a specific validator for the class described by this
\r
867 public org.exolab.castor.xml.TypeValidator getValidator(
\r
873 * Method getXMLName.
\r
875 * @return the XML Name for the Class being described.
\r
877 public java.lang.String getXMLName(
\r
883 * Method isElementDefinition.
\r
885 * @return true if XML schema definition of this Class is that
\r
887 * element or element with anonymous type definition.
\r
889 public boolean isElementDefinition(
\r
891 return _elementDefinition;
\r