2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
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3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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5 * This file is part of Jalview.
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7 * Jalview is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License
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9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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11 * Jalview is distributed in the hope that it will be useful, but
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12 * WITHOUT ANY WARRANTY; without even the implied warranty
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13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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14 * PURPOSE. See the GNU General Public License for more details.
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16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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18 package jalview.schemabinding.version2.descriptors;
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20 //---------------------------------/
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21 //- Imported classes and packages -/
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22 //---------------------------------/
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24 import jalview.schemabinding.version2.AnnotationElement;
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27 * Class AnnotationElementDescriptor.
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29 * @version $Revision$ $Date$
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31 public class AnnotationElementDescriptor extends
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32 org.exolab.castor.xml.util.XMLClassDescriptorImpl
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35 // --------------------------/
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36 // - Class/Member Variables -/
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37 // --------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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59 // ----------------/
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60 // - Constructors -/
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61 // ----------------/
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63 public AnnotationElementDescriptor()
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66 _nsURI = "www.vamsas.ac.uk/jalview/version2";
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67 _xmlName = "annotationElement";
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68 _elementDefinition = true;
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70 // -- set grouping compositor
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71 setCompositorAsSequence();
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 // -- initialize attribute descriptors
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78 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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79 java.lang.Integer.TYPE, "_position", "position",
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80 org.exolab.castor.xml.NodeType.Attribute);
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81 handler = new org.exolab.castor.xml.XMLFieldHandler()
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83 public java.lang.Object getValue(java.lang.Object object)
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84 throws IllegalStateException
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86 AnnotationElement target = (AnnotationElement) object;
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87 if (!target.hasPosition())
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91 return new java.lang.Integer(target.getPosition());
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94 public void setValue(java.lang.Object object, java.lang.Object value)
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95 throws IllegalStateException, IllegalArgumentException
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99 AnnotationElement target = (AnnotationElement) object;
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100 // ignore null values for non optional primitives
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106 target.setPosition(((java.lang.Integer) value).intValue());
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107 } catch (java.lang.Exception ex)
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109 throw new IllegalStateException(ex.toString());
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113 public java.lang.Object newInstance(java.lang.Object parent)
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118 desc.setHandler(handler);
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119 desc.setRequired(true);
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120 desc.setMultivalued(false);
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121 addFieldDescriptor(desc);
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123 // -- validation code for: _position
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124 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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125 fieldValidator.setMinOccurs(1);
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126 { // -- local scope
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127 org.exolab.castor.xml.validators.IntValidator typeValidator;
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128 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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129 fieldValidator.setValidator(typeValidator);
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130 typeValidator.setMinInclusive(-2147483648);
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131 typeValidator.setMaxInclusive(2147483647);
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133 desc.setValidator(fieldValidator);
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135 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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136 java.lang.Integer.TYPE, "_colour", "colour",
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137 org.exolab.castor.xml.NodeType.Attribute);
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138 handler = new org.exolab.castor.xml.XMLFieldHandler()
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140 public java.lang.Object getValue(java.lang.Object object)
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141 throws IllegalStateException
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143 AnnotationElement target = (AnnotationElement) object;
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144 if (!target.hasColour())
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148 return new java.lang.Integer(target.getColour());
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151 public void setValue(java.lang.Object object, java.lang.Object value)
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152 throws IllegalStateException, IllegalArgumentException
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156 AnnotationElement target = (AnnotationElement) object;
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157 // if null, use delete method for optional primitives
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160 target.deleteColour();
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163 target.setColour(((java.lang.Integer) value).intValue());
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164 } catch (java.lang.Exception ex)
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166 throw new IllegalStateException(ex.toString());
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170 public java.lang.Object newInstance(java.lang.Object parent)
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175 desc.setHandler(handler);
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176 desc.setMultivalued(false);
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177 addFieldDescriptor(desc);
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179 // -- validation code for: _colour
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180 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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181 { // -- local scope
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182 org.exolab.castor.xml.validators.IntValidator typeValidator;
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183 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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184 fieldValidator.setValidator(typeValidator);
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185 typeValidator.setMinInclusive(-2147483648);
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186 typeValidator.setMaxInclusive(2147483647);
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188 desc.setValidator(fieldValidator);
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189 // -- initialize element descriptors
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191 // -- _displayCharacter
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192 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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193 java.lang.String.class, "_displayCharacter",
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194 "displayCharacter", org.exolab.castor.xml.NodeType.Element);
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195 desc.setImmutable(true);
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196 handler = new org.exolab.castor.xml.XMLFieldHandler()
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198 public java.lang.Object getValue(java.lang.Object object)
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199 throws IllegalStateException
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201 AnnotationElement target = (AnnotationElement) object;
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202 return target.getDisplayCharacter();
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205 public void setValue(java.lang.Object object, java.lang.Object value)
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206 throws IllegalStateException, IllegalArgumentException
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210 AnnotationElement target = (AnnotationElement) object;
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211 target.setDisplayCharacter((java.lang.String) value);
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212 } catch (java.lang.Exception ex)
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214 throw new IllegalStateException(ex.toString());
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218 public java.lang.Object newInstance(java.lang.Object parent)
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223 desc.setHandler(handler);
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224 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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225 desc.setMultivalued(false);
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226 addFieldDescriptor(desc);
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228 // -- validation code for: _displayCharacter
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229 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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230 { // -- local scope
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231 org.exolab.castor.xml.validators.StringValidator typeValidator;
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232 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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233 fieldValidator.setValidator(typeValidator);
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234 typeValidator.setWhiteSpace("preserve");
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236 desc.setValidator(fieldValidator);
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238 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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239 java.lang.String.class, "_description", "description",
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240 org.exolab.castor.xml.NodeType.Element);
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241 desc.setImmutable(true);
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242 handler = new org.exolab.castor.xml.XMLFieldHandler()
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244 public java.lang.Object getValue(java.lang.Object object)
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245 throws IllegalStateException
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247 AnnotationElement target = (AnnotationElement) object;
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248 return target.getDescription();
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251 public void setValue(java.lang.Object object, java.lang.Object value)
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252 throws IllegalStateException, IllegalArgumentException
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256 AnnotationElement target = (AnnotationElement) object;
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257 target.setDescription((java.lang.String) value);
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258 } catch (java.lang.Exception ex)
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260 throw new IllegalStateException(ex.toString());
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264 public java.lang.Object newInstance(java.lang.Object parent)
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269 desc.setHandler(handler);
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270 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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271 desc.setMultivalued(false);
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272 addFieldDescriptor(desc);
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274 // -- validation code for: _description
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275 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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276 { // -- local scope
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277 org.exolab.castor.xml.validators.StringValidator typeValidator;
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278 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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279 fieldValidator.setValidator(typeValidator);
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280 typeValidator.setWhiteSpace("preserve");
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282 desc.setValidator(fieldValidator);
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283 // -- _secondaryStructure
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284 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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285 java.lang.String.class, "_secondaryStructure",
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286 "secondaryStructure", org.exolab.castor.xml.NodeType.Element);
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287 desc.setImmutable(true);
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288 handler = new org.exolab.castor.xml.XMLFieldHandler()
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290 public java.lang.Object getValue(java.lang.Object object)
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291 throws IllegalStateException
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293 AnnotationElement target = (AnnotationElement) object;
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294 return target.getSecondaryStructure();
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297 public void setValue(java.lang.Object object, java.lang.Object value)
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298 throws IllegalStateException, IllegalArgumentException
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302 AnnotationElement target = (AnnotationElement) object;
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303 target.setSecondaryStructure((java.lang.String) value);
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304 } catch (java.lang.Exception ex)
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306 throw new IllegalStateException(ex.toString());
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310 public java.lang.Object newInstance(java.lang.Object parent)
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315 desc.setHandler(handler);
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316 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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317 desc.setMultivalued(false);
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318 addFieldDescriptor(desc);
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320 // -- validation code for: _secondaryStructure
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321 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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322 { // -- local scope
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323 org.exolab.castor.xml.validators.StringValidator typeValidator;
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324 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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325 fieldValidator.setValidator(typeValidator);
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326 typeValidator.setWhiteSpace("preserve");
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327 typeValidator.setLength(1);
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329 desc.setValidator(fieldValidator);
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331 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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332 java.lang.Float.TYPE, "_value", "value",
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333 org.exolab.castor.xml.NodeType.Element);
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334 handler = new org.exolab.castor.xml.XMLFieldHandler()
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336 public java.lang.Object getValue(java.lang.Object object)
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337 throws IllegalStateException
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339 AnnotationElement target = (AnnotationElement) object;
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340 if (!target.hasValue())
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344 return new java.lang.Float(target.getValue());
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347 public void setValue(java.lang.Object object, java.lang.Object value)
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348 throws IllegalStateException, IllegalArgumentException
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352 AnnotationElement target = (AnnotationElement) object;
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353 // if null, use delete method for optional primitives
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356 target.deleteValue();
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359 target.setValue(((java.lang.Float) value).floatValue());
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360 } catch (java.lang.Exception ex)
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362 throw new IllegalStateException(ex.toString());
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366 public java.lang.Object newInstance(java.lang.Object parent)
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371 desc.setHandler(handler);
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372 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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373 desc.setMultivalued(false);
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374 addFieldDescriptor(desc);
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376 // -- validation code for: _value
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377 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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378 { // -- local scope
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379 org.exolab.castor.xml.validators.FloatValidator typeValidator;
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380 typeValidator = new org.exolab.castor.xml.validators.FloatValidator();
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381 fieldValidator.setValidator(typeValidator);
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382 typeValidator.setMinInclusive((float) -3.4028235E38);
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383 typeValidator.setMaxInclusive((float) 3.4028235E38);
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385 desc.setValidator(fieldValidator);
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393 * Method getAccessMode.
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395 * @return the access mode specified for this class.
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397 public org.exolab.castor.mapping.AccessMode getAccessMode()
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403 * Method getIdentity.
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405 * @return the identity field, null if this class has no identity.
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407 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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409 return super.getIdentity();
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413 * Method getJavaClass.
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415 * @return the Java class represented by this descriptor.
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417 public java.lang.Class getJavaClass()
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419 return jalview.schemabinding.version2.AnnotationElement.class;
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423 * Method getNameSpacePrefix.
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425 * @return the namespace prefix to use when marshaling as XML.
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427 public java.lang.String getNameSpacePrefix()
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433 * Method getNameSpaceURI.
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435 * @return the namespace URI used when marshaling and unmarshaling as XML.
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437 public java.lang.String getNameSpaceURI()
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443 * Method getValidator.
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445 * @return a specific validator for the class described by this
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448 public org.exolab.castor.xml.TypeValidator getValidator()
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454 * Method getXMLName.
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456 * @return the XML Name for the Class being described.
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458 public java.lang.String getXMLName()
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464 * Method isElementDefinition.
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466 * @return true if XML schema definition of this Class is that of a global
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467 * element or element with anonymous type definition.
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469 public boolean isElementDefinition()
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471 return _elementDefinition;
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