2 * Jalview - A Sequence Alignment Editor and Viewer (Development Version 2.4.1)
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3 * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.schemabinding.version2.descriptors;
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21 //---------------------------------/
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22 //- Imported classes and packages -/
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23 //---------------------------------/
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25 import jalview.schemabinding.version2.AnnotationElement;
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28 * Class AnnotationElementDescriptor.
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30 * @version $Revision$ $Date$
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32 public class AnnotationElementDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
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35 //--------------------------/
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36 //- Class/Member Variables -/
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37 //--------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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64 public AnnotationElementDescriptor() {
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66 _nsURI = "www.vamsas.ac.uk/jalview/version2";
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67 _xmlName = "annotationElement";
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68 _elementDefinition = true;
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70 //-- set grouping compositor
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71 setCompositorAsSequence();
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 //-- initialize attribute descriptors
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78 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_position", "position", org.exolab.castor.xml.NodeType.Attribute);
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79 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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80 public java.lang.Object getValue( java.lang.Object object )
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81 throws IllegalStateException
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83 AnnotationElement target = (AnnotationElement) object;
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84 if (!target.hasPosition()) { return null; }
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85 return new java.lang.Integer(target.getPosition());
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87 public void setValue( java.lang.Object object, java.lang.Object value)
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88 throws IllegalStateException, IllegalArgumentException
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91 AnnotationElement target = (AnnotationElement) object;
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92 // ignore null values for non optional primitives
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93 if (value == null) { return; }
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95 target.setPosition( ((java.lang.Integer) value).intValue());
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96 } catch (java.lang.Exception ex) {
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97 throw new IllegalStateException(ex.toString());
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100 public java.lang.Object newInstance(java.lang.Object parent) {
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104 desc.setHandler(handler);
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105 desc.setRequired(true);
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106 desc.setMultivalued(false);
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107 addFieldDescriptor(desc);
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109 //-- validation code for: _position
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110 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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111 fieldValidator.setMinOccurs(1);
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113 org.exolab.castor.xml.validators.IntValidator typeValidator;
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114 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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115 fieldValidator.setValidator(typeValidator);
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116 typeValidator.setMinInclusive(-2147483648);
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117 typeValidator.setMaxInclusive(2147483647);
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119 desc.setValidator(fieldValidator);
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121 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Integer.TYPE, "_colour", "colour", org.exolab.castor.xml.NodeType.Attribute);
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122 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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123 public java.lang.Object getValue( java.lang.Object object )
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124 throws IllegalStateException
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126 AnnotationElement target = (AnnotationElement) object;
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127 if (!target.hasColour()) { return null; }
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128 return new java.lang.Integer(target.getColour());
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130 public void setValue( java.lang.Object object, java.lang.Object value)
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131 throws IllegalStateException, IllegalArgumentException
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134 AnnotationElement target = (AnnotationElement) object;
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135 // if null, use delete method for optional primitives
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136 if (value == null) {
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137 target.deleteColour();
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140 target.setColour( ((java.lang.Integer) value).intValue());
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141 } catch (java.lang.Exception ex) {
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142 throw new IllegalStateException(ex.toString());
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145 public java.lang.Object newInstance(java.lang.Object parent) {
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149 desc.setHandler(handler);
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150 desc.setMultivalued(false);
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151 addFieldDescriptor(desc);
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153 //-- validation code for: _colour
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154 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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156 org.exolab.castor.xml.validators.IntValidator typeValidator;
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157 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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158 fieldValidator.setValidator(typeValidator);
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159 typeValidator.setMinInclusive(-2147483648);
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160 typeValidator.setMaxInclusive(2147483647);
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162 desc.setValidator(fieldValidator);
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163 //-- initialize element descriptors
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165 //-- _displayCharacter
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166 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_displayCharacter", "displayCharacter", org.exolab.castor.xml.NodeType.Element);
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167 desc.setImmutable(true);
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168 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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169 public java.lang.Object getValue( java.lang.Object object )
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170 throws IllegalStateException
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172 AnnotationElement target = (AnnotationElement) object;
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173 return target.getDisplayCharacter();
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175 public void setValue( java.lang.Object object, java.lang.Object value)
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176 throws IllegalStateException, IllegalArgumentException
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179 AnnotationElement target = (AnnotationElement) object;
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180 target.setDisplayCharacter( (java.lang.String) value);
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181 } catch (java.lang.Exception ex) {
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182 throw new IllegalStateException(ex.toString());
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185 public java.lang.Object newInstance(java.lang.Object parent) {
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189 desc.setHandler(handler);
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190 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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191 desc.setMultivalued(false);
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192 addFieldDescriptor(desc);
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194 //-- validation code for: _displayCharacter
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195 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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197 org.exolab.castor.xml.validators.StringValidator typeValidator;
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198 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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199 fieldValidator.setValidator(typeValidator);
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200 typeValidator.setWhiteSpace("preserve");
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202 desc.setValidator(fieldValidator);
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204 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Element);
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205 desc.setImmutable(true);
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206 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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207 public java.lang.Object getValue( java.lang.Object object )
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208 throws IllegalStateException
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210 AnnotationElement target = (AnnotationElement) object;
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211 return target.getDescription();
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213 public void setValue( java.lang.Object object, java.lang.Object value)
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214 throws IllegalStateException, IllegalArgumentException
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217 AnnotationElement target = (AnnotationElement) object;
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218 target.setDescription( (java.lang.String) value);
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219 } catch (java.lang.Exception ex) {
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220 throw new IllegalStateException(ex.toString());
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223 public java.lang.Object newInstance(java.lang.Object parent) {
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227 desc.setHandler(handler);
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228 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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229 desc.setMultivalued(false);
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230 addFieldDescriptor(desc);
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232 //-- validation code for: _description
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233 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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235 org.exolab.castor.xml.validators.StringValidator typeValidator;
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236 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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237 fieldValidator.setValidator(typeValidator);
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238 typeValidator.setWhiteSpace("preserve");
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240 desc.setValidator(fieldValidator);
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241 //-- _secondaryStructure
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242 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_secondaryStructure", "secondaryStructure", org.exolab.castor.xml.NodeType.Element);
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243 desc.setImmutable(true);
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244 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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245 public java.lang.Object getValue( java.lang.Object object )
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246 throws IllegalStateException
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248 AnnotationElement target = (AnnotationElement) object;
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249 return target.getSecondaryStructure();
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251 public void setValue( java.lang.Object object, java.lang.Object value)
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252 throws IllegalStateException, IllegalArgumentException
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255 AnnotationElement target = (AnnotationElement) object;
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256 target.setSecondaryStructure( (java.lang.String) value);
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257 } catch (java.lang.Exception ex) {
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258 throw new IllegalStateException(ex.toString());
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261 public java.lang.Object newInstance(java.lang.Object parent) {
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265 desc.setHandler(handler);
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266 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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267 desc.setMultivalued(false);
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268 addFieldDescriptor(desc);
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270 //-- validation code for: _secondaryStructure
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271 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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273 org.exolab.castor.xml.validators.StringValidator typeValidator;
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274 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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275 fieldValidator.setValidator(typeValidator);
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276 typeValidator.setWhiteSpace("preserve");
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277 typeValidator.setLength(1);
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279 desc.setValidator(fieldValidator);
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281 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.Float.TYPE, "_value", "value", org.exolab.castor.xml.NodeType.Element);
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282 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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283 public java.lang.Object getValue( java.lang.Object object )
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284 throws IllegalStateException
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286 AnnotationElement target = (AnnotationElement) object;
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287 if (!target.hasValue()) { return null; }
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288 return new java.lang.Float(target.getValue());
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290 public void setValue( java.lang.Object object, java.lang.Object value)
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291 throws IllegalStateException, IllegalArgumentException
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294 AnnotationElement target = (AnnotationElement) object;
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295 // if null, use delete method for optional primitives
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296 if (value == null) {
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297 target.deleteValue();
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300 target.setValue( ((java.lang.Float) value).floatValue());
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301 } catch (java.lang.Exception ex) {
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302 throw new IllegalStateException(ex.toString());
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305 public java.lang.Object newInstance(java.lang.Object parent) {
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309 desc.setHandler(handler);
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310 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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311 desc.setMultivalued(false);
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312 addFieldDescriptor(desc);
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314 //-- validation code for: _value
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315 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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317 org.exolab.castor.xml.validators.FloatValidator typeValidator;
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318 typeValidator = new org.exolab.castor.xml.validators.FloatValidator();
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319 fieldValidator.setValidator(typeValidator);
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320 typeValidator.setMinInclusive((float) -3.4028235E38);
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321 typeValidator.setMaxInclusive((float) 3.4028235E38);
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323 desc.setValidator(fieldValidator);
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332 * Method getAccessMode.
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334 * @return the access mode specified for this class.
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336 public org.exolab.castor.mapping.AccessMode getAccessMode(
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342 * Method getIdentity.
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344 * @return the identity field, null if this class has no
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347 public org.exolab.castor.mapping.FieldDescriptor getIdentity(
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349 return super.getIdentity();
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353 * Method getJavaClass.
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355 * @return the Java class represented by this descriptor.
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357 public java.lang.Class getJavaClass(
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359 return jalview.schemabinding.version2.AnnotationElement.class;
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363 * Method getNameSpacePrefix.
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365 * @return the namespace prefix to use when marshaling as XML.
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367 public java.lang.String getNameSpacePrefix(
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373 * Method getNameSpaceURI.
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375 * @return the namespace URI used when marshaling and
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376 * unmarshaling as XML.
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378 public java.lang.String getNameSpaceURI(
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384 * Method getValidator.
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386 * @return a specific validator for the class described by this
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389 public org.exolab.castor.xml.TypeValidator getValidator(
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395 * Method getXMLName.
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397 * @return the XML Name for the Class being described.
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399 public java.lang.String getXMLName(
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405 * Method isElementDefinition.
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407 * @return true if XML schema definition of this Class is that
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409 * element or element with anonymous type definition.
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411 public boolean isElementDefinition(
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413 return _elementDefinition;
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