2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
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3 * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.schemabinding.version2.descriptors;
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21 // ---------------------------------/
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22 // - Imported classes and packages -/
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23 // ---------------------------------/
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25 import jalview.schemabinding.version2.AnnotationElement;
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28 * Class AnnotationElementDescriptor.
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30 * @version $Revision$ $Date$
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32 public class AnnotationElementDescriptor extends
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33 org.exolab.castor.xml.util.XMLClassDescriptorImpl
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36 // --------------------------/
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37 // - Class/Member Variables -/
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38 // --------------------------/
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41 * Field _elementDefinition.
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43 private boolean _elementDefinition;
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48 private java.lang.String _nsPrefix;
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53 private java.lang.String _nsURI;
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58 private java.lang.String _xmlName;
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60 // ----------------/
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61 // - Constructors -/
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62 // ----------------/
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64 public AnnotationElementDescriptor()
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67 _nsURI = "www.vamsas.ac.uk/jalview/version2";
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68 _xmlName = "annotationElement";
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69 _elementDefinition = true;
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71 // -- set grouping compositor
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72 setCompositorAsSequence();
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73 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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74 org.exolab.castor.mapping.FieldHandler handler = null;
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75 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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76 // -- initialize attribute descriptors
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79 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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80 java.lang.Integer.TYPE, "_position", "position",
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81 org.exolab.castor.xml.NodeType.Attribute);
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82 handler = new org.exolab.castor.xml.XMLFieldHandler()
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84 public java.lang.Object getValue(java.lang.Object object)
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85 throws IllegalStateException
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87 AnnotationElement target = (AnnotationElement) object;
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88 if (!target.hasPosition())
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92 return new java.lang.Integer(target.getPosition());
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95 public void setValue(java.lang.Object object, java.lang.Object value)
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96 throws IllegalStateException, IllegalArgumentException
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100 AnnotationElement target = (AnnotationElement) object;
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101 // ignore null values for non optional primitives
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107 target.setPosition(((java.lang.Integer) value).intValue());
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108 } catch (java.lang.Exception ex)
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110 throw new IllegalStateException(ex.toString());
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114 public java.lang.Object newInstance(java.lang.Object parent)
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119 desc.setHandler(handler);
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120 desc.setRequired(true);
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121 desc.setMultivalued(false);
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122 addFieldDescriptor(desc);
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124 // -- validation code for: _position
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125 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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126 fieldValidator.setMinOccurs(1);
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127 { // -- local scope
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128 org.exolab.castor.xml.validators.IntValidator typeValidator;
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129 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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130 fieldValidator.setValidator(typeValidator);
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131 typeValidator.setMinInclusive(-2147483648);
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132 typeValidator.setMaxInclusive(2147483647);
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134 desc.setValidator(fieldValidator);
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136 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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137 java.lang.Integer.TYPE, "_colour", "colour",
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138 org.exolab.castor.xml.NodeType.Attribute);
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139 handler = new org.exolab.castor.xml.XMLFieldHandler()
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141 public java.lang.Object getValue(java.lang.Object object)
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142 throws IllegalStateException
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144 AnnotationElement target = (AnnotationElement) object;
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145 if (!target.hasColour())
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149 return new java.lang.Integer(target.getColour());
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152 public void setValue(java.lang.Object object, java.lang.Object value)
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153 throws IllegalStateException, IllegalArgumentException
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157 AnnotationElement target = (AnnotationElement) object;
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158 // if null, use delete method for optional primitives
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161 target.deleteColour();
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164 target.setColour(((java.lang.Integer) value).intValue());
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165 } catch (java.lang.Exception ex)
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167 throw new IllegalStateException(ex.toString());
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171 public java.lang.Object newInstance(java.lang.Object parent)
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176 desc.setHandler(handler);
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177 desc.setMultivalued(false);
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178 addFieldDescriptor(desc);
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180 // -- validation code for: _colour
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181 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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182 { // -- local scope
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183 org.exolab.castor.xml.validators.IntValidator typeValidator;
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184 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
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185 fieldValidator.setValidator(typeValidator);
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186 typeValidator.setMinInclusive(-2147483648);
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187 typeValidator.setMaxInclusive(2147483647);
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189 desc.setValidator(fieldValidator);
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190 // -- initialize element descriptors
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192 // -- _displayCharacter
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193 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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194 java.lang.String.class, "_displayCharacter",
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195 "displayCharacter", org.exolab.castor.xml.NodeType.Element);
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196 desc.setImmutable(true);
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197 handler = new org.exolab.castor.xml.XMLFieldHandler()
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199 public java.lang.Object getValue(java.lang.Object object)
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200 throws IllegalStateException
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202 AnnotationElement target = (AnnotationElement) object;
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203 return target.getDisplayCharacter();
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206 public void setValue(java.lang.Object object, java.lang.Object value)
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207 throws IllegalStateException, IllegalArgumentException
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211 AnnotationElement target = (AnnotationElement) object;
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212 target.setDisplayCharacter((java.lang.String) value);
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213 } catch (java.lang.Exception ex)
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215 throw new IllegalStateException(ex.toString());
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219 public java.lang.Object newInstance(java.lang.Object parent)
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224 desc.setHandler(handler);
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225 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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226 desc.setMultivalued(false);
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227 addFieldDescriptor(desc);
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229 // -- validation code for: _displayCharacter
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230 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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231 { // -- local scope
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232 org.exolab.castor.xml.validators.StringValidator typeValidator;
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233 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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234 fieldValidator.setValidator(typeValidator);
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235 typeValidator.setWhiteSpace("preserve");
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237 desc.setValidator(fieldValidator);
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239 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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240 java.lang.String.class, "_description", "description",
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241 org.exolab.castor.xml.NodeType.Element);
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242 desc.setImmutable(true);
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243 handler = new org.exolab.castor.xml.XMLFieldHandler()
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245 public java.lang.Object getValue(java.lang.Object object)
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246 throws IllegalStateException
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248 AnnotationElement target = (AnnotationElement) object;
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249 return target.getDescription();
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252 public void setValue(java.lang.Object object, java.lang.Object value)
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253 throws IllegalStateException, IllegalArgumentException
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257 AnnotationElement target = (AnnotationElement) object;
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258 target.setDescription((java.lang.String) value);
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259 } catch (java.lang.Exception ex)
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261 throw new IllegalStateException(ex.toString());
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265 public java.lang.Object newInstance(java.lang.Object parent)
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270 desc.setHandler(handler);
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271 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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272 desc.setMultivalued(false);
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273 addFieldDescriptor(desc);
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275 // -- validation code for: _description
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276 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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277 { // -- local scope
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278 org.exolab.castor.xml.validators.StringValidator typeValidator;
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279 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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280 fieldValidator.setValidator(typeValidator);
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281 typeValidator.setWhiteSpace("preserve");
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283 desc.setValidator(fieldValidator);
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284 // -- _secondaryStructure
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285 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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286 java.lang.String.class, "_secondaryStructure",
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287 "secondaryStructure", org.exolab.castor.xml.NodeType.Element);
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288 desc.setImmutable(true);
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289 handler = new org.exolab.castor.xml.XMLFieldHandler()
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291 public java.lang.Object getValue(java.lang.Object object)
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292 throws IllegalStateException
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294 AnnotationElement target = (AnnotationElement) object;
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295 return target.getSecondaryStructure();
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298 public void setValue(java.lang.Object object, java.lang.Object value)
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299 throws IllegalStateException, IllegalArgumentException
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303 AnnotationElement target = (AnnotationElement) object;
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304 target.setSecondaryStructure((java.lang.String) value);
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305 } catch (java.lang.Exception ex)
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307 throw new IllegalStateException(ex.toString());
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311 public java.lang.Object newInstance(java.lang.Object parent)
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316 desc.setHandler(handler);
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317 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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318 desc.setMultivalued(false);
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319 addFieldDescriptor(desc);
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321 // -- validation code for: _secondaryStructure
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322 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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323 { // -- local scope
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324 org.exolab.castor.xml.validators.StringValidator typeValidator;
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325 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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326 fieldValidator.setValidator(typeValidator);
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327 typeValidator.setWhiteSpace("preserve");
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328 typeValidator.setLength(1);
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330 desc.setValidator(fieldValidator);
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332 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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333 java.lang.Float.TYPE, "_value", "value",
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334 org.exolab.castor.xml.NodeType.Element);
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335 handler = new org.exolab.castor.xml.XMLFieldHandler()
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337 public java.lang.Object getValue(java.lang.Object object)
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338 throws IllegalStateException
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340 AnnotationElement target = (AnnotationElement) object;
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341 if (!target.hasValue())
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345 return new java.lang.Float(target.getValue());
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348 public void setValue(java.lang.Object object, java.lang.Object value)
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349 throws IllegalStateException, IllegalArgumentException
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353 AnnotationElement target = (AnnotationElement) object;
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354 // if null, use delete method for optional primitives
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357 target.deleteValue();
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360 target.setValue(((java.lang.Float) value).floatValue());
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361 } catch (java.lang.Exception ex)
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363 throw new IllegalStateException(ex.toString());
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367 public java.lang.Object newInstance(java.lang.Object parent)
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372 desc.setHandler(handler);
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373 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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374 desc.setMultivalued(false);
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375 addFieldDescriptor(desc);
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377 // -- validation code for: _value
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378 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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379 { // -- local scope
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380 org.exolab.castor.xml.validators.FloatValidator typeValidator;
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381 typeValidator = new org.exolab.castor.xml.validators.FloatValidator();
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382 fieldValidator.setValidator(typeValidator);
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383 typeValidator.setMinInclusive((float) -3.4028235E38);
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384 typeValidator.setMaxInclusive((float) 3.4028235E38);
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386 desc.setValidator(fieldValidator);
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394 * Method getAccessMode.
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396 * @return the access mode specified for this class.
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398 public org.exolab.castor.mapping.AccessMode getAccessMode()
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404 * Method getIdentity.
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406 * @return the identity field, null if this class has no identity.
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408 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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410 return super.getIdentity();
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414 * Method getJavaClass.
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416 * @return the Java class represented by this descriptor.
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418 public java.lang.Class getJavaClass()
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420 return jalview.schemabinding.version2.AnnotationElement.class;
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424 * Method getNameSpacePrefix.
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426 * @return the namespace prefix to use when marshaling as XML.
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428 public java.lang.String getNameSpacePrefix()
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434 * Method getNameSpaceURI.
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436 * @return the namespace URI used when marshaling and unmarshaling as XML.
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438 public java.lang.String getNameSpaceURI()
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444 * Method getValidator.
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446 * @return a specific validator for the class described by this
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449 public org.exolab.castor.xml.TypeValidator getValidator()
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455 * Method getXMLName.
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457 * @return the XML Name for the Class being described.
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459 public java.lang.String getXMLName()
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465 * Method isElementDefinition.
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467 * @return true if XML schema definition of this Class is that of a global
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468 * element or element with anonymous type definition.
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470 public boolean isElementDefinition()
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472 return _elementDefinition;
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