1 /*******************************************************************************
2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview.
17 * If not, see <http://www.gnu.org/licenses/>.
18 * The Jalview Authors are detailed in the 'AUTHORS' file.
19 ******************************************************************************/
21 * This class was automatically generated with
22 * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
27 package jalview.schemabinding.version2.descriptors;
29 //---------------------------------/
30 //- Imported classes and packages -/
31 //---------------------------------/
33 import jalview.schemabinding.version2.AnnotationElement;
36 * Class AnnotationElementDescriptor.
38 * @version $Revision$ $Date$
40 public class AnnotationElementDescriptor extends
41 org.exolab.castor.xml.util.XMLClassDescriptorImpl
44 // --------------------------/
45 // - Class/Member Variables -/
46 // --------------------------/
49 * Field _elementDefinition.
51 private boolean _elementDefinition;
56 private java.lang.String _nsPrefix;
61 private java.lang.String _nsURI;
66 private java.lang.String _xmlName;
72 public AnnotationElementDescriptor()
75 _nsURI = "www.vamsas.ac.uk/jalview/version2";
76 _xmlName = "annotationElement";
77 _elementDefinition = true;
79 // -- set grouping compositor
80 setCompositorAsSequence();
81 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
82 org.exolab.castor.mapping.FieldHandler handler = null;
83 org.exolab.castor.xml.FieldValidator fieldValidator = null;
84 // -- initialize attribute descriptors
87 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
88 java.lang.Integer.TYPE, "_position", "position",
89 org.exolab.castor.xml.NodeType.Attribute);
90 handler = new org.exolab.castor.xml.XMLFieldHandler()
92 public java.lang.Object getValue(java.lang.Object object)
93 throws IllegalStateException
95 AnnotationElement target = (AnnotationElement) object;
96 if (!target.hasPosition())
100 return new java.lang.Integer(target.getPosition());
103 public void setValue(java.lang.Object object, java.lang.Object value)
104 throws IllegalStateException, IllegalArgumentException
108 AnnotationElement target = (AnnotationElement) object;
109 // ignore null values for non optional primitives
115 target.setPosition(((java.lang.Integer) value).intValue());
116 } catch (java.lang.Exception ex)
118 throw new IllegalStateException(ex.toString());
122 public java.lang.Object newInstance(java.lang.Object parent)
127 desc.setHandler(handler);
128 desc.setRequired(true);
129 desc.setMultivalued(false);
130 addFieldDescriptor(desc);
132 // -- validation code for: _position
133 fieldValidator = new org.exolab.castor.xml.FieldValidator();
134 fieldValidator.setMinOccurs(1);
136 org.exolab.castor.xml.validators.IntValidator typeValidator;
137 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
138 fieldValidator.setValidator(typeValidator);
139 typeValidator.setMinInclusive(-2147483648);
140 typeValidator.setMaxInclusive(2147483647);
142 desc.setValidator(fieldValidator);
144 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
145 java.lang.Integer.TYPE, "_colour", "colour",
146 org.exolab.castor.xml.NodeType.Attribute);
147 handler = new org.exolab.castor.xml.XMLFieldHandler()
149 public java.lang.Object getValue(java.lang.Object object)
150 throws IllegalStateException
152 AnnotationElement target = (AnnotationElement) object;
153 if (!target.hasColour())
157 return new java.lang.Integer(target.getColour());
160 public void setValue(java.lang.Object object, java.lang.Object value)
161 throws IllegalStateException, IllegalArgumentException
165 AnnotationElement target = (AnnotationElement) object;
166 // if null, use delete method for optional primitives
169 target.deleteColour();
172 target.setColour(((java.lang.Integer) value).intValue());
173 } catch (java.lang.Exception ex)
175 throw new IllegalStateException(ex.toString());
179 public java.lang.Object newInstance(java.lang.Object parent)
184 desc.setHandler(handler);
185 desc.setMultivalued(false);
186 addFieldDescriptor(desc);
188 // -- validation code for: _colour
189 fieldValidator = new org.exolab.castor.xml.FieldValidator();
191 org.exolab.castor.xml.validators.IntValidator typeValidator;
192 typeValidator = new org.exolab.castor.xml.validators.IntValidator();
193 fieldValidator.setValidator(typeValidator);
194 typeValidator.setMinInclusive(-2147483648);
195 typeValidator.setMaxInclusive(2147483647);
197 desc.setValidator(fieldValidator);
198 // -- initialize element descriptors
200 // -- _displayCharacter
201 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
202 java.lang.String.class, "_displayCharacter",
203 "displayCharacter", org.exolab.castor.xml.NodeType.Element);
204 desc.setImmutable(true);
205 handler = new org.exolab.castor.xml.XMLFieldHandler()
207 public java.lang.Object getValue(java.lang.Object object)
208 throws IllegalStateException
210 AnnotationElement target = (AnnotationElement) object;
211 return target.getDisplayCharacter();
214 public void setValue(java.lang.Object object, java.lang.Object value)
215 throws IllegalStateException, IllegalArgumentException
219 AnnotationElement target = (AnnotationElement) object;
220 target.setDisplayCharacter((java.lang.String) value);
221 } catch (java.lang.Exception ex)
223 throw new IllegalStateException(ex.toString());
227 public java.lang.Object newInstance(java.lang.Object parent)
232 desc.setHandler(handler);
233 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
234 desc.setMultivalued(false);
235 addFieldDescriptor(desc);
237 // -- validation code for: _displayCharacter
238 fieldValidator = new org.exolab.castor.xml.FieldValidator();
240 org.exolab.castor.xml.validators.StringValidator typeValidator;
241 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
242 fieldValidator.setValidator(typeValidator);
243 typeValidator.setWhiteSpace("preserve");
245 desc.setValidator(fieldValidator);
247 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
248 java.lang.String.class, "_description", "description",
249 org.exolab.castor.xml.NodeType.Element);
250 desc.setImmutable(true);
251 handler = new org.exolab.castor.xml.XMLFieldHandler()
253 public java.lang.Object getValue(java.lang.Object object)
254 throws IllegalStateException
256 AnnotationElement target = (AnnotationElement) object;
257 return target.getDescription();
260 public void setValue(java.lang.Object object, java.lang.Object value)
261 throws IllegalStateException, IllegalArgumentException
265 AnnotationElement target = (AnnotationElement) object;
266 target.setDescription((java.lang.String) value);
267 } catch (java.lang.Exception ex)
269 throw new IllegalStateException(ex.toString());
273 public java.lang.Object newInstance(java.lang.Object parent)
278 desc.setHandler(handler);
279 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
280 desc.setMultivalued(false);
281 addFieldDescriptor(desc);
283 // -- validation code for: _description
284 fieldValidator = new org.exolab.castor.xml.FieldValidator();
286 org.exolab.castor.xml.validators.StringValidator typeValidator;
287 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
288 fieldValidator.setValidator(typeValidator);
289 typeValidator.setWhiteSpace("preserve");
291 desc.setValidator(fieldValidator);
292 // -- _secondaryStructure
293 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
294 java.lang.String.class, "_secondaryStructure",
295 "secondaryStructure", org.exolab.castor.xml.NodeType.Element);
296 desc.setImmutable(true);
297 handler = new org.exolab.castor.xml.XMLFieldHandler()
299 public java.lang.Object getValue(java.lang.Object object)
300 throws IllegalStateException
302 AnnotationElement target = (AnnotationElement) object;
303 return target.getSecondaryStructure();
306 public void setValue(java.lang.Object object, java.lang.Object value)
307 throws IllegalStateException, IllegalArgumentException
311 AnnotationElement target = (AnnotationElement) object;
312 target.setSecondaryStructure((java.lang.String) value);
313 } catch (java.lang.Exception ex)
315 throw new IllegalStateException(ex.toString());
319 public java.lang.Object newInstance(java.lang.Object parent)
324 desc.setHandler(handler);
325 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
326 desc.setMultivalued(false);
327 addFieldDescriptor(desc);
329 // -- validation code for: _secondaryStructure
330 fieldValidator = new org.exolab.castor.xml.FieldValidator();
332 org.exolab.castor.xml.validators.StringValidator typeValidator;
333 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
334 fieldValidator.setValidator(typeValidator);
335 typeValidator.setWhiteSpace("preserve");
336 typeValidator.setLength(1);
338 desc.setValidator(fieldValidator);
340 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
341 java.lang.Float.TYPE, "_value", "value",
342 org.exolab.castor.xml.NodeType.Element);
343 handler = new org.exolab.castor.xml.XMLFieldHandler()
345 public java.lang.Object getValue(java.lang.Object object)
346 throws IllegalStateException
348 AnnotationElement target = (AnnotationElement) object;
349 if (!target.hasValue())
353 return new java.lang.Float(target.getValue());
356 public void setValue(java.lang.Object object, java.lang.Object value)
357 throws IllegalStateException, IllegalArgumentException
361 AnnotationElement target = (AnnotationElement) object;
362 // if null, use delete method for optional primitives
365 target.deleteValue();
368 target.setValue(((java.lang.Float) value).floatValue());
369 } catch (java.lang.Exception ex)
371 throw new IllegalStateException(ex.toString());
375 public java.lang.Object newInstance(java.lang.Object parent)
380 desc.setHandler(handler);
381 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
382 desc.setMultivalued(false);
383 addFieldDescriptor(desc);
385 // -- validation code for: _value
386 fieldValidator = new org.exolab.castor.xml.FieldValidator();
388 org.exolab.castor.xml.validators.FloatValidator typeValidator;
389 typeValidator = new org.exolab.castor.xml.validators.FloatValidator();
390 fieldValidator.setValidator(typeValidator);
391 typeValidator.setMinInclusive((float) -3.4028235E38);
392 typeValidator.setMaxInclusive((float) 3.4028235E38);
394 desc.setValidator(fieldValidator);
402 * Method getAccessMode.
404 * @return the access mode specified for this class.
406 public org.exolab.castor.mapping.AccessMode getAccessMode()
412 * Method getIdentity.
414 * @return the identity field, null if this class has no identity.
416 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
418 return super.getIdentity();
422 * Method getJavaClass.
424 * @return the Java class represented by this descriptor.
426 public java.lang.Class getJavaClass()
428 return jalview.schemabinding.version2.AnnotationElement.class;
432 * Method getNameSpacePrefix.
434 * @return the namespace prefix to use when marshaling as XML.
436 public java.lang.String getNameSpacePrefix()
442 * Method getNameSpaceURI.
444 * @return the namespace URI used when marshaling and unmarshaling as XML.
446 public java.lang.String getNameSpaceURI()
452 * Method getValidator.
454 * @return a specific validator for the class described by this
457 public org.exolab.castor.xml.TypeValidator getValidator()
465 * @return the XML Name for the Class being described.
467 public java.lang.String getXMLName()
473 * Method isElementDefinition.
475 * @return true if XML schema definition of this Class is that of a global
476 * element or element with anonymous type definition.
478 public boolean isElementDefinition()
480 return _elementDefinition;