2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.6)
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3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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5 * This file is part of Jalview.
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7 * Jalview is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License
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9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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11 * Jalview is distributed in the hope that it will be useful, but
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12 * WITHOUT ANY WARRANTY; without even the implied warranty
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13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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14 * PURPOSE. See the GNU General Public License for more details.
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16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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18 package jalview.schemabinding.version2.descriptors;
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20 //---------------------------------/
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21 //- Imported classes and packages -/
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22 //---------------------------------/
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24 import jalview.schemabinding.version2.DBRef;
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27 * Class DBRefDescriptor.
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29 * @version $Revision$ $Date$
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31 public class DBRefDescriptor extends
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32 org.exolab.castor.xml.util.XMLClassDescriptorImpl
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35 // --------------------------/
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36 // - Class/Member Variables -/
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37 // --------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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59 // ----------------/
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60 // - Constructors -/
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61 // ----------------/
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63 public DBRefDescriptor()
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66 _nsURI = "www.vamsas.ac.uk/jalview/version2";
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68 _elementDefinition = true;
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70 // -- set grouping compositor
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71 setCompositorAsSequence();
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 // -- initialize attribute descriptors
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78 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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79 java.lang.String.class, "_source", "source",
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80 org.exolab.castor.xml.NodeType.Attribute);
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81 desc.setImmutable(true);
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82 handler = new org.exolab.castor.xml.XMLFieldHandler()
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84 public java.lang.Object getValue(java.lang.Object object)
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85 throws IllegalStateException
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87 DBRef target = (DBRef) object;
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88 return target.getSource();
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91 public void setValue(java.lang.Object object, java.lang.Object value)
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92 throws IllegalStateException, IllegalArgumentException
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96 DBRef target = (DBRef) object;
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97 target.setSource((java.lang.String) value);
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98 } catch (java.lang.Exception ex)
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100 throw new IllegalStateException(ex.toString());
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104 public java.lang.Object newInstance(java.lang.Object parent)
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109 desc.setHandler(handler);
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110 desc.setMultivalued(false);
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111 addFieldDescriptor(desc);
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113 // -- validation code for: _source
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114 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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115 { // -- local scope
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116 org.exolab.castor.xml.validators.StringValidator typeValidator;
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117 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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118 fieldValidator.setValidator(typeValidator);
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119 typeValidator.setWhiteSpace("preserve");
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121 desc.setValidator(fieldValidator);
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123 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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124 java.lang.String.class, "_version", "version",
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125 org.exolab.castor.xml.NodeType.Attribute);
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126 desc.setImmutable(true);
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127 handler = new org.exolab.castor.xml.XMLFieldHandler()
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129 public java.lang.Object getValue(java.lang.Object object)
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130 throws IllegalStateException
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132 DBRef target = (DBRef) object;
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133 return target.getVersion();
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136 public void setValue(java.lang.Object object, java.lang.Object value)
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137 throws IllegalStateException, IllegalArgumentException
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141 DBRef target = (DBRef) object;
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142 target.setVersion((java.lang.String) value);
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143 } catch (java.lang.Exception ex)
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145 throw new IllegalStateException(ex.toString());
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149 public java.lang.Object newInstance(java.lang.Object parent)
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154 desc.setHandler(handler);
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155 desc.setMultivalued(false);
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156 addFieldDescriptor(desc);
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158 // -- validation code for: _version
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159 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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160 { // -- local scope
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161 org.exolab.castor.xml.validators.StringValidator typeValidator;
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162 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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163 fieldValidator.setValidator(typeValidator);
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164 typeValidator.setWhiteSpace("preserve");
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166 desc.setValidator(fieldValidator);
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168 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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169 java.lang.String.class, "_accessionId", "accessionId",
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170 org.exolab.castor.xml.NodeType.Attribute);
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171 desc.setImmutable(true);
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172 handler = new org.exolab.castor.xml.XMLFieldHandler()
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174 public java.lang.Object getValue(java.lang.Object object)
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175 throws IllegalStateException
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177 DBRef target = (DBRef) object;
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178 return target.getAccessionId();
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181 public void setValue(java.lang.Object object, java.lang.Object value)
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182 throws IllegalStateException, IllegalArgumentException
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186 DBRef target = (DBRef) object;
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187 target.setAccessionId((java.lang.String) value);
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188 } catch (java.lang.Exception ex)
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190 throw new IllegalStateException(ex.toString());
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194 public java.lang.Object newInstance(java.lang.Object parent)
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199 desc.setHandler(handler);
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200 desc.setMultivalued(false);
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201 addFieldDescriptor(desc);
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203 // -- validation code for: _accessionId
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204 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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205 { // -- local scope
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206 org.exolab.castor.xml.validators.StringValidator typeValidator;
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207 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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208 fieldValidator.setValidator(typeValidator);
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209 typeValidator.setWhiteSpace("preserve");
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211 desc.setValidator(fieldValidator);
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212 // -- initialize element descriptors
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215 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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216 jalview.schemabinding.version2.Mapping.class, "_mapping",
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217 "Mapping", org.exolab.castor.xml.NodeType.Element);
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218 handler = new org.exolab.castor.xml.XMLFieldHandler()
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220 public java.lang.Object getValue(java.lang.Object object)
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221 throws IllegalStateException
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223 DBRef target = (DBRef) object;
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224 return target.getMapping();
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227 public void setValue(java.lang.Object object, java.lang.Object value)
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228 throws IllegalStateException, IllegalArgumentException
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232 DBRef target = (DBRef) object;
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233 target.setMapping((jalview.schemabinding.version2.Mapping) value);
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234 } catch (java.lang.Exception ex)
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236 throw new IllegalStateException(ex.toString());
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240 public java.lang.Object newInstance(java.lang.Object parent)
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242 return new jalview.schemabinding.version2.Mapping();
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245 desc.setHandler(handler);
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246 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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247 desc.setMultivalued(false);
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248 addFieldDescriptor(desc);
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250 // -- validation code for: _mapping
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251 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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252 { // -- local scope
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254 desc.setValidator(fieldValidator);
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262 * Method getAccessMode.
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264 * @return the access mode specified for this class.
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266 public org.exolab.castor.mapping.AccessMode getAccessMode()
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272 * Method getIdentity.
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274 * @return the identity field, null if this class has no identity.
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276 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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278 return super.getIdentity();
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282 * Method getJavaClass.
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284 * @return the Java class represented by this descriptor.
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286 public java.lang.Class getJavaClass()
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288 return jalview.schemabinding.version2.DBRef.class;
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292 * Method getNameSpacePrefix.
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294 * @return the namespace prefix to use when marshaling as XML.
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296 public java.lang.String getNameSpacePrefix()
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302 * Method getNameSpaceURI.
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304 * @return the namespace URI used when marshaling and unmarshaling as XML.
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306 public java.lang.String getNameSpaceURI()
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312 * Method getValidator.
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314 * @return a specific validator for the class described by this
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317 public org.exolab.castor.xml.TypeValidator getValidator()
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323 * Method getXMLName.
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325 * @return the XML Name for the Class being described.
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327 public java.lang.String getXMLName()
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333 * Method isElementDefinition.
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335 * @return true if XML schema definition of this Class is that of a global
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336 * element or element with anonymous type definition.
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338 public boolean isElementDefinition()
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340 return _elementDefinition;
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