2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.2)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3
10 * of the License, or (at your option) any later version.
12 * Jalview is distributed in the hope that it will be useful, but
13 * WITHOUT ANY WARRANTY; without even the implied warranty
14 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
15 * PURPOSE. See the GNU General Public License for more details.
17 * You should have received a copy of the GNU General Public License
18 * along with Jalview. If not, see <http://www.gnu.org/licenses/>.
19 * The Jalview Authors are detailed in the 'AUTHORS' file.
21 package jalview.schemabinding.version2.descriptors;
23 //---------------------------------/
24 //- Imported classes and packages -/
25 //---------------------------------/
27 import jalview.schemabinding.version2.DBRef;
30 * Class DBRefDescriptor.
32 * @version $Revision$ $Date$
34 public class DBRefDescriptor extends
35 org.exolab.castor.xml.util.XMLClassDescriptorImpl
38 // --------------------------/
39 // - Class/Member Variables -/
40 // --------------------------/
43 * Field _elementDefinition.
45 private boolean _elementDefinition;
50 private java.lang.String _nsPrefix;
55 private java.lang.String _nsURI;
60 private java.lang.String _xmlName;
66 public DBRefDescriptor()
69 _nsURI = "www.vamsas.ac.uk/jalview/version2";
71 _elementDefinition = true;
73 // -- set grouping compositor
74 setCompositorAsSequence();
75 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
76 org.exolab.castor.mapping.FieldHandler handler = null;
77 org.exolab.castor.xml.FieldValidator fieldValidator = null;
78 // -- initialize attribute descriptors
81 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
82 java.lang.String.class, "_source", "source",
83 org.exolab.castor.xml.NodeType.Attribute);
84 desc.setImmutable(true);
85 handler = new org.exolab.castor.xml.XMLFieldHandler()
87 public java.lang.Object getValue(java.lang.Object object)
88 throws IllegalStateException
90 DBRef target = (DBRef) object;
91 return target.getSource();
94 public void setValue(java.lang.Object object, java.lang.Object value)
95 throws IllegalStateException, IllegalArgumentException
99 DBRef target = (DBRef) object;
100 target.setSource((java.lang.String) value);
101 } catch (java.lang.Exception ex)
103 throw new IllegalStateException(ex.toString());
107 public java.lang.Object newInstance(java.lang.Object parent)
112 desc.setHandler(handler);
113 desc.setMultivalued(false);
114 addFieldDescriptor(desc);
116 // -- validation code for: _source
117 fieldValidator = new org.exolab.castor.xml.FieldValidator();
119 org.exolab.castor.xml.validators.StringValidator typeValidator;
120 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
121 fieldValidator.setValidator(typeValidator);
122 typeValidator.setWhiteSpace("preserve");
124 desc.setValidator(fieldValidator);
126 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
127 java.lang.String.class, "_version", "version",
128 org.exolab.castor.xml.NodeType.Attribute);
129 desc.setImmutable(true);
130 handler = new org.exolab.castor.xml.XMLFieldHandler()
132 public java.lang.Object getValue(java.lang.Object object)
133 throws IllegalStateException
135 DBRef target = (DBRef) object;
136 return target.getVersion();
139 public void setValue(java.lang.Object object, java.lang.Object value)
140 throws IllegalStateException, IllegalArgumentException
144 DBRef target = (DBRef) object;
145 target.setVersion((java.lang.String) value);
146 } catch (java.lang.Exception ex)
148 throw new IllegalStateException(ex.toString());
152 public java.lang.Object newInstance(java.lang.Object parent)
157 desc.setHandler(handler);
158 desc.setMultivalued(false);
159 addFieldDescriptor(desc);
161 // -- validation code for: _version
162 fieldValidator = new org.exolab.castor.xml.FieldValidator();
164 org.exolab.castor.xml.validators.StringValidator typeValidator;
165 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
166 fieldValidator.setValidator(typeValidator);
167 typeValidator.setWhiteSpace("preserve");
169 desc.setValidator(fieldValidator);
171 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
172 java.lang.String.class, "_accessionId", "accessionId",
173 org.exolab.castor.xml.NodeType.Attribute);
174 desc.setImmutable(true);
175 handler = new org.exolab.castor.xml.XMLFieldHandler()
177 public java.lang.Object getValue(java.lang.Object object)
178 throws IllegalStateException
180 DBRef target = (DBRef) object;
181 return target.getAccessionId();
184 public void setValue(java.lang.Object object, java.lang.Object value)
185 throws IllegalStateException, IllegalArgumentException
189 DBRef target = (DBRef) object;
190 target.setAccessionId((java.lang.String) value);
191 } catch (java.lang.Exception ex)
193 throw new IllegalStateException(ex.toString());
197 public java.lang.Object newInstance(java.lang.Object parent)
202 desc.setHandler(handler);
203 desc.setMultivalued(false);
204 addFieldDescriptor(desc);
206 // -- validation code for: _accessionId
207 fieldValidator = new org.exolab.castor.xml.FieldValidator();
209 org.exolab.castor.xml.validators.StringValidator typeValidator;
210 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
211 fieldValidator.setValidator(typeValidator);
212 typeValidator.setWhiteSpace("preserve");
214 desc.setValidator(fieldValidator);
215 // -- initialize element descriptors
218 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
219 jalview.schemabinding.version2.Mapping.class, "_mapping",
220 "Mapping", org.exolab.castor.xml.NodeType.Element);
221 handler = new org.exolab.castor.xml.XMLFieldHandler()
223 public java.lang.Object getValue(java.lang.Object object)
224 throws IllegalStateException
226 DBRef target = (DBRef) object;
227 return target.getMapping();
230 public void setValue(java.lang.Object object, java.lang.Object value)
231 throws IllegalStateException, IllegalArgumentException
235 DBRef target = (DBRef) object;
236 target.setMapping((jalview.schemabinding.version2.Mapping) value);
237 } catch (java.lang.Exception ex)
239 throw new IllegalStateException(ex.toString());
243 public java.lang.Object newInstance(java.lang.Object parent)
245 return new jalview.schemabinding.version2.Mapping();
248 desc.setHandler(handler);
249 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
250 desc.setMultivalued(false);
251 addFieldDescriptor(desc);
253 // -- validation code for: _mapping
254 fieldValidator = new org.exolab.castor.xml.FieldValidator();
257 desc.setValidator(fieldValidator);
265 * Method getAccessMode.
267 * @return the access mode specified for this class.
269 public org.exolab.castor.mapping.AccessMode getAccessMode()
275 * Method getIdentity.
277 * @return the identity field, null if this class has no identity.
279 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
281 return super.getIdentity();
285 * Method getJavaClass.
287 * @return the Java class represented by this descriptor.
289 public java.lang.Class getJavaClass()
291 return jalview.schemabinding.version2.DBRef.class;
295 * Method getNameSpacePrefix.
297 * @return the namespace prefix to use when marshaling as XML.
299 public java.lang.String getNameSpacePrefix()
305 * Method getNameSpaceURI.
307 * @return the namespace URI used when marshaling and unmarshaling as XML.
309 public java.lang.String getNameSpaceURI()
315 * Method getValidator.
317 * @return a specific validator for the class described by this
320 public org.exolab.castor.xml.TypeValidator getValidator()
328 * @return the XML Name for the Class being described.
330 public java.lang.String getXMLName()
336 * Method isElementDefinition.
338 * @return true if XML schema definition of this Class is that of a global
339 * element or element with anonymous type definition.
341 public boolean isElementDefinition()
343 return _elementDefinition;