2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
3 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.schemabinding.version2.descriptors;
20 //---------------------------------/
21 //- Imported classes and packages -/
22 //---------------------------------/
24 import jalview.schemabinding.version2.DBRef;
27 * Class DBRefDescriptor.
29 * @version $Revision$ $Date$
31 public class DBRefDescriptor extends
32 org.exolab.castor.xml.util.XMLClassDescriptorImpl
35 // --------------------------/
36 // - Class/Member Variables -/
37 // --------------------------/
40 * Field _elementDefinition.
42 private boolean _elementDefinition;
47 private java.lang.String _nsPrefix;
52 private java.lang.String _nsURI;
57 private java.lang.String _xmlName;
63 public DBRefDescriptor()
66 _nsURI = "www.vamsas.ac.uk/jalview/version2";
68 _elementDefinition = true;
70 // -- set grouping compositor
71 setCompositorAsSequence();
72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
73 org.exolab.castor.mapping.FieldHandler handler = null;
74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
75 // -- initialize attribute descriptors
78 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
79 java.lang.String.class, "_source", "source",
80 org.exolab.castor.xml.NodeType.Attribute);
81 desc.setImmutable(true);
82 handler = new org.exolab.castor.xml.XMLFieldHandler()
84 public java.lang.Object getValue(java.lang.Object object)
85 throws IllegalStateException
87 DBRef target = (DBRef) object;
88 return target.getSource();
91 public void setValue(java.lang.Object object, java.lang.Object value)
92 throws IllegalStateException, IllegalArgumentException
96 DBRef target = (DBRef) object;
97 target.setSource((java.lang.String) value);
98 } catch (java.lang.Exception ex)
100 throw new IllegalStateException(ex.toString());
104 public java.lang.Object newInstance(java.lang.Object parent)
109 desc.setHandler(handler);
110 desc.setMultivalued(false);
111 addFieldDescriptor(desc);
113 // -- validation code for: _source
114 fieldValidator = new org.exolab.castor.xml.FieldValidator();
116 org.exolab.castor.xml.validators.StringValidator typeValidator;
117 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
118 fieldValidator.setValidator(typeValidator);
119 typeValidator.setWhiteSpace("preserve");
121 desc.setValidator(fieldValidator);
123 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
124 java.lang.String.class, "_version", "version",
125 org.exolab.castor.xml.NodeType.Attribute);
126 desc.setImmutable(true);
127 handler = new org.exolab.castor.xml.XMLFieldHandler()
129 public java.lang.Object getValue(java.lang.Object object)
130 throws IllegalStateException
132 DBRef target = (DBRef) object;
133 return target.getVersion();
136 public void setValue(java.lang.Object object, java.lang.Object value)
137 throws IllegalStateException, IllegalArgumentException
141 DBRef target = (DBRef) object;
142 target.setVersion((java.lang.String) value);
143 } catch (java.lang.Exception ex)
145 throw new IllegalStateException(ex.toString());
149 public java.lang.Object newInstance(java.lang.Object parent)
154 desc.setHandler(handler);
155 desc.setMultivalued(false);
156 addFieldDescriptor(desc);
158 // -- validation code for: _version
159 fieldValidator = new org.exolab.castor.xml.FieldValidator();
161 org.exolab.castor.xml.validators.StringValidator typeValidator;
162 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
163 fieldValidator.setValidator(typeValidator);
164 typeValidator.setWhiteSpace("preserve");
166 desc.setValidator(fieldValidator);
168 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
169 java.lang.String.class, "_accessionId", "accessionId",
170 org.exolab.castor.xml.NodeType.Attribute);
171 desc.setImmutable(true);
172 handler = new org.exolab.castor.xml.XMLFieldHandler()
174 public java.lang.Object getValue(java.lang.Object object)
175 throws IllegalStateException
177 DBRef target = (DBRef) object;
178 return target.getAccessionId();
181 public void setValue(java.lang.Object object, java.lang.Object value)
182 throws IllegalStateException, IllegalArgumentException
186 DBRef target = (DBRef) object;
187 target.setAccessionId((java.lang.String) value);
188 } catch (java.lang.Exception ex)
190 throw new IllegalStateException(ex.toString());
194 public java.lang.Object newInstance(java.lang.Object parent)
199 desc.setHandler(handler);
200 desc.setMultivalued(false);
201 addFieldDescriptor(desc);
203 // -- validation code for: _accessionId
204 fieldValidator = new org.exolab.castor.xml.FieldValidator();
206 org.exolab.castor.xml.validators.StringValidator typeValidator;
207 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
208 fieldValidator.setValidator(typeValidator);
209 typeValidator.setWhiteSpace("preserve");
211 desc.setValidator(fieldValidator);
212 // -- initialize element descriptors
215 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
216 jalview.schemabinding.version2.Mapping.class, "_mapping",
217 "Mapping", org.exolab.castor.xml.NodeType.Element);
218 handler = new org.exolab.castor.xml.XMLFieldHandler()
220 public java.lang.Object getValue(java.lang.Object object)
221 throws IllegalStateException
223 DBRef target = (DBRef) object;
224 return target.getMapping();
227 public void setValue(java.lang.Object object, java.lang.Object value)
228 throws IllegalStateException, IllegalArgumentException
232 DBRef target = (DBRef) object;
233 target.setMapping((jalview.schemabinding.version2.Mapping) value);
234 } catch (java.lang.Exception ex)
236 throw new IllegalStateException(ex.toString());
240 public java.lang.Object newInstance(java.lang.Object parent)
242 return new jalview.schemabinding.version2.Mapping();
245 desc.setHandler(handler);
246 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
247 desc.setMultivalued(false);
248 addFieldDescriptor(desc);
250 // -- validation code for: _mapping
251 fieldValidator = new org.exolab.castor.xml.FieldValidator();
254 desc.setValidator(fieldValidator);
262 * Method getAccessMode.
264 * @return the access mode specified for this class.
266 public org.exolab.castor.mapping.AccessMode getAccessMode()
272 * Method getIdentity.
274 * @return the identity field, null if this class has no identity.
276 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
278 return super.getIdentity();
282 * Method getJavaClass.
284 * @return the Java class represented by this descriptor.
286 public java.lang.Class getJavaClass()
288 return jalview.schemabinding.version2.DBRef.class;
292 * Method getNameSpacePrefix.
294 * @return the namespace prefix to use when marshaling as XML.
296 public java.lang.String getNameSpacePrefix()
302 * Method getNameSpaceURI.
304 * @return the namespace URI used when marshaling and unmarshaling as XML.
306 public java.lang.String getNameSpaceURI()
312 * Method getValidator.
314 * @return a specific validator for the class described by this
317 public org.exolab.castor.xml.TypeValidator getValidator()
325 * @return the XML Name for the Class being described.
327 public java.lang.String getXMLName()
333 * Method isElementDefinition.
335 * @return true if XML schema definition of this Class is that of a global
336 * element or element with anonymous type definition.
338 public boolean isElementDefinition()
340 return _elementDefinition;