2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4.1)
\r
3 * Copyright (C) 2009 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
\r
5 * This program is free software; you can redistribute it and/or
\r
6 * modify it under the terms of the GNU General Public License
\r
7 * as published by the Free Software Foundation; either version 2
\r
8 * of the License, or (at your option) any later version.
\r
10 * This program is distributed in the hope that it will be useful,
\r
11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
\r
12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
\r
13 * GNU General Public License for more details.
\r
15 * You should have received a copy of the GNU General Public License
\r
16 * along with this program; if not, write to the Free Software
\r
17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
\r
19 package jalview.schemabinding.version2.descriptors;
\r
21 //---------------------------------/
\r
22 //- Imported classes and packages -/
\r
23 //---------------------------------/
\r
25 import jalview.schemabinding.version2.JalviewModelSequence;
\r
28 * Class JalviewModelSequenceDescriptor.
\r
30 * @version $Revision$ $Date$
\r
32 public class JalviewModelSequenceDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
\r
35 //--------------------------/
\r
36 //- Class/Member Variables -/
\r
37 //--------------------------/
\r
40 * Field _elementDefinition.
\r
42 private boolean _elementDefinition;
\r
47 private java.lang.String _nsPrefix;
\r
52 private java.lang.String _nsURI;
\r
57 private java.lang.String _xmlName;
\r
64 public JalviewModelSequenceDescriptor() {
\r
66 _nsURI = "www.jalview.org";
\r
67 _elementDefinition = false;
\r
69 //-- set grouping compositor
\r
70 setCompositorAsSequence();
\r
71 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
\r
72 org.exolab.castor.mapping.FieldHandler handler = null;
\r
73 org.exolab.castor.xml.FieldValidator fieldValidator = null;
\r
74 //-- initialize attribute descriptors
\r
76 //-- initialize element descriptors
\r
79 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.JSeq.class, "_JSeqList", "JSeq", org.exolab.castor.xml.NodeType.Element);
\r
80 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
81 public java.lang.Object getValue( java.lang.Object object )
\r
82 throws IllegalStateException
\r
84 JalviewModelSequence target = (JalviewModelSequence) object;
\r
85 return target.getJSeq();
\r
87 public void setValue( java.lang.Object object, java.lang.Object value)
\r
88 throws IllegalStateException, IllegalArgumentException
\r
91 JalviewModelSequence target = (JalviewModelSequence) object;
\r
92 target.addJSeq( (jalview.schemabinding.version2.JSeq) value);
\r
93 } catch (java.lang.Exception ex) {
\r
94 throw new IllegalStateException(ex.toString());
\r
97 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
\r
99 JalviewModelSequence target = (JalviewModelSequence) object;
\r
100 target.removeAllJSeq();
\r
101 } catch (java.lang.Exception ex) {
\r
102 throw new IllegalStateException(ex.toString());
\r
105 public java.lang.Object newInstance(java.lang.Object parent) {
\r
106 return new jalview.schemabinding.version2.JSeq();
\r
109 desc.setHandler(handler);
\r
110 desc.setNameSpaceURI("www.jalview.org");
\r
111 desc.setRequired(true);
\r
112 desc.setMultivalued(true);
\r
113 addFieldDescriptor(desc);
\r
115 //-- validation code for: _JSeqList
\r
116 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
117 fieldValidator.setMinOccurs(1);
\r
120 desc.setValidator(fieldValidator);
\r
122 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.JGroup.class, "_JGroupList", "JGroup", org.exolab.castor.xml.NodeType.Element);
\r
123 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
124 public java.lang.Object getValue( java.lang.Object object )
\r
125 throws IllegalStateException
\r
127 JalviewModelSequence target = (JalviewModelSequence) object;
\r
128 return target.getJGroup();
\r
130 public void setValue( java.lang.Object object, java.lang.Object value)
\r
131 throws IllegalStateException, IllegalArgumentException
\r
134 JalviewModelSequence target = (JalviewModelSequence) object;
\r
135 target.addJGroup( (jalview.schemabinding.version2.JGroup) value);
\r
136 } catch (java.lang.Exception ex) {
\r
137 throw new IllegalStateException(ex.toString());
\r
140 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
\r
142 JalviewModelSequence target = (JalviewModelSequence) object;
\r
143 target.removeAllJGroup();
\r
144 } catch (java.lang.Exception ex) {
\r
145 throw new IllegalStateException(ex.toString());
\r
148 public java.lang.Object newInstance(java.lang.Object parent) {
\r
149 return new jalview.schemabinding.version2.JGroup();
\r
152 desc.setHandler(handler);
\r
153 desc.setNameSpaceURI("www.jalview.org");
\r
154 desc.setMultivalued(true);
\r
155 addFieldDescriptor(desc);
\r
157 //-- validation code for: _JGroupList
\r
158 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
159 fieldValidator.setMinOccurs(0);
\r
162 desc.setValidator(fieldValidator);
\r
164 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Viewport.class, "_viewportList", "Viewport", org.exolab.castor.xml.NodeType.Element);
\r
165 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
166 public java.lang.Object getValue( java.lang.Object object )
\r
167 throws IllegalStateException
\r
169 JalviewModelSequence target = (JalviewModelSequence) object;
\r
170 return target.getViewport();
\r
172 public void setValue( java.lang.Object object, java.lang.Object value)
\r
173 throws IllegalStateException, IllegalArgumentException
\r
176 JalviewModelSequence target = (JalviewModelSequence) object;
\r
177 target.addViewport( (jalview.schemabinding.version2.Viewport) value);
\r
178 } catch (java.lang.Exception ex) {
\r
179 throw new IllegalStateException(ex.toString());
\r
182 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
\r
184 JalviewModelSequence target = (JalviewModelSequence) object;
\r
185 target.removeAllViewport();
\r
186 } catch (java.lang.Exception ex) {
\r
187 throw new IllegalStateException(ex.toString());
\r
190 public java.lang.Object newInstance(java.lang.Object parent) {
\r
191 return new jalview.schemabinding.version2.Viewport();
\r
194 desc.setHandler(handler);
\r
195 desc.setNameSpaceURI("www.jalview.org");
\r
196 desc.setRequired(true);
\r
197 desc.setMultivalued(true);
\r
198 addFieldDescriptor(desc);
\r
200 //-- validation code for: _viewportList
\r
201 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
202 fieldValidator.setMinOccurs(1);
\r
205 desc.setValidator(fieldValidator);
\r
206 //-- _userColoursList
\r
207 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.UserColours.class, "_userColoursList", "UserColours", org.exolab.castor.xml.NodeType.Element);
\r
208 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
209 public java.lang.Object getValue( java.lang.Object object )
\r
210 throws IllegalStateException
\r
212 JalviewModelSequence target = (JalviewModelSequence) object;
\r
213 return target.getUserColours();
\r
215 public void setValue( java.lang.Object object, java.lang.Object value)
\r
216 throws IllegalStateException, IllegalArgumentException
\r
219 JalviewModelSequence target = (JalviewModelSequence) object;
\r
220 target.addUserColours( (jalview.schemabinding.version2.UserColours) value);
\r
221 } catch (java.lang.Exception ex) {
\r
222 throw new IllegalStateException(ex.toString());
\r
225 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
\r
227 JalviewModelSequence target = (JalviewModelSequence) object;
\r
228 target.removeAllUserColours();
\r
229 } catch (java.lang.Exception ex) {
\r
230 throw new IllegalStateException(ex.toString());
\r
233 public java.lang.Object newInstance(java.lang.Object parent) {
\r
234 return new jalview.schemabinding.version2.UserColours();
\r
237 desc.setHandler(handler);
\r
238 desc.setNameSpaceURI("www.jalview.org");
\r
239 desc.setMultivalued(true);
\r
240 addFieldDescriptor(desc);
\r
242 //-- validation code for: _userColoursList
\r
243 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
244 fieldValidator.setMinOccurs(0);
\r
247 desc.setValidator(fieldValidator);
\r
249 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Tree.class, "_treeList", "tree", org.exolab.castor.xml.NodeType.Element);
\r
250 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
251 public java.lang.Object getValue( java.lang.Object object )
\r
252 throws IllegalStateException
\r
254 JalviewModelSequence target = (JalviewModelSequence) object;
\r
255 return target.getTree();
\r
257 public void setValue( java.lang.Object object, java.lang.Object value)
\r
258 throws IllegalStateException, IllegalArgumentException
\r
261 JalviewModelSequence target = (JalviewModelSequence) object;
\r
262 target.addTree( (jalview.schemabinding.version2.Tree) value);
\r
263 } catch (java.lang.Exception ex) {
\r
264 throw new IllegalStateException(ex.toString());
\r
267 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
\r
269 JalviewModelSequence target = (JalviewModelSequence) object;
\r
270 target.removeAllTree();
\r
271 } catch (java.lang.Exception ex) {
\r
272 throw new IllegalStateException(ex.toString());
\r
275 public java.lang.Object newInstance(java.lang.Object parent) {
\r
276 return new jalview.schemabinding.version2.Tree();
\r
279 desc.setHandler(handler);
\r
280 desc.setNameSpaceURI("www.jalview.org");
\r
281 desc.setMultivalued(true);
\r
282 addFieldDescriptor(desc);
\r
284 //-- validation code for: _treeList
\r
285 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
286 fieldValidator.setMinOccurs(0);
\r
289 desc.setValidator(fieldValidator);
\r
290 //-- _featureSettings
\r
291 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.FeatureSettings.class, "_featureSettings", "FeatureSettings", org.exolab.castor.xml.NodeType.Element);
\r
292 handler = new org.exolab.castor.xml.XMLFieldHandler() {
\r
293 public java.lang.Object getValue( java.lang.Object object )
\r
294 throws IllegalStateException
\r
296 JalviewModelSequence target = (JalviewModelSequence) object;
\r
297 return target.getFeatureSettings();
\r
299 public void setValue( java.lang.Object object, java.lang.Object value)
\r
300 throws IllegalStateException, IllegalArgumentException
\r
303 JalviewModelSequence target = (JalviewModelSequence) object;
\r
304 target.setFeatureSettings( (jalview.schemabinding.version2.FeatureSettings) value);
\r
305 } catch (java.lang.Exception ex) {
\r
306 throw new IllegalStateException(ex.toString());
\r
309 public java.lang.Object newInstance(java.lang.Object parent) {
\r
310 return new jalview.schemabinding.version2.FeatureSettings();
\r
313 desc.setHandler(handler);
\r
314 desc.setNameSpaceURI("www.jalview.org");
\r
315 desc.setMultivalued(false);
\r
316 addFieldDescriptor(desc);
\r
318 //-- validation code for: _featureSettings
\r
319 fieldValidator = new org.exolab.castor.xml.FieldValidator();
\r
322 desc.setValidator(fieldValidator);
\r
331 * Method getAccessMode.
\r
333 * @return the access mode specified for this class.
\r
335 public org.exolab.castor.mapping.AccessMode getAccessMode(
\r
341 * Method getIdentity.
\r
343 * @return the identity field, null if this class has no
\r
346 public org.exolab.castor.mapping.FieldDescriptor getIdentity(
\r
348 return super.getIdentity();
\r
352 * Method getJavaClass.
\r
354 * @return the Java class represented by this descriptor.
\r
356 public java.lang.Class getJavaClass(
\r
358 return jalview.schemabinding.version2.JalviewModelSequence.class;
\r
362 * Method getNameSpacePrefix.
\r
364 * @return the namespace prefix to use when marshaling as XML.
\r
366 public java.lang.String getNameSpacePrefix(
\r
372 * Method getNameSpaceURI.
\r
374 * @return the namespace URI used when marshaling and
\r
375 * unmarshaling as XML.
\r
377 public java.lang.String getNameSpaceURI(
\r
383 * Method getValidator.
\r
385 * @return a specific validator for the class described by this
\r
388 public org.exolab.castor.xml.TypeValidator getValidator(
\r
394 * Method getXMLName.
\r
396 * @return the XML Name for the Class being described.
\r
398 public java.lang.String getXMLName(
\r
404 * Method isElementDefinition.
\r
406 * @return true if XML schema definition of this Class is that
\r
408 * element or element with anonymous type definition.
\r
410 public boolean isElementDefinition(
\r
412 return _elementDefinition;
\r