2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.4)
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3 * Copyright (C) 2008 AM Waterhouse, J Procter, G Barton, M Clamp, S Searle
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5 * This program is free software; you can redistribute it and/or
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6 * modify it under the terms of the GNU General Public License
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7 * as published by the Free Software Foundation; either version 2
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8 * of the License, or (at your option) any later version.
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10 * This program is distributed in the hope that it will be useful,
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11 * but WITHOUT ANY WARRANTY; without even the implied warranty of
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12 * MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
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13 * GNU General Public License for more details.
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15 * You should have received a copy of the GNU General Public License
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16 * along with this program; if not, write to the Free Software
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17 * Foundation, Inc., 51 Franklin Street, Fifth Floor, Boston, MA 02110-1301, USA
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19 package jalview.schemabinding.version2.descriptors;
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21 // ---------------------------------/
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22 // - Imported classes and packages -/
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23 // ---------------------------------/
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25 import jalview.schemabinding.version2.JalviewModelSequence;
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28 * Class JalviewModelSequenceDescriptor.
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30 * @version $Revision$ $Date$
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32 public class JalviewModelSequenceDescriptor extends
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33 org.exolab.castor.xml.util.XMLClassDescriptorImpl
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36 // --------------------------/
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37 // - Class/Member Variables -/
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38 // --------------------------/
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41 * Field _elementDefinition.
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43 private boolean _elementDefinition;
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48 private java.lang.String _nsPrefix;
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53 private java.lang.String _nsURI;
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58 private java.lang.String _xmlName;
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60 // ----------------/
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61 // - Constructors -/
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62 // ----------------/
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64 public JalviewModelSequenceDescriptor()
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67 _nsURI = "www.jalview.org";
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68 _elementDefinition = false;
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70 // -- set grouping compositor
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71 setCompositorAsSequence();
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72 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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73 org.exolab.castor.mapping.FieldHandler handler = null;
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74 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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75 // -- initialize attribute descriptors
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77 // -- initialize element descriptors
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80 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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81 jalview.schemabinding.version2.JSeq.class, "_JSeqList", "JSeq",
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82 org.exolab.castor.xml.NodeType.Element);
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83 handler = new org.exolab.castor.xml.XMLFieldHandler()
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85 public java.lang.Object getValue(java.lang.Object object)
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86 throws IllegalStateException
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88 JalviewModelSequence target = (JalviewModelSequence) object;
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89 return target.getJSeq();
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92 public void setValue(java.lang.Object object, java.lang.Object value)
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93 throws IllegalStateException, IllegalArgumentException
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97 JalviewModelSequence target = (JalviewModelSequence) object;
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98 target.addJSeq((jalview.schemabinding.version2.JSeq) value);
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99 } catch (java.lang.Exception ex)
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101 throw new IllegalStateException(ex.toString());
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105 public void resetValue(Object object) throws IllegalStateException,
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106 IllegalArgumentException
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110 JalviewModelSequence target = (JalviewModelSequence) object;
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111 target.removeAllJSeq();
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112 } catch (java.lang.Exception ex)
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114 throw new IllegalStateException(ex.toString());
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118 public java.lang.Object newInstance(java.lang.Object parent)
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120 return new jalview.schemabinding.version2.JSeq();
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123 desc.setHandler(handler);
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124 desc.setNameSpaceURI("www.jalview.org");
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125 desc.setRequired(true);
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126 desc.setMultivalued(true);
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127 addFieldDescriptor(desc);
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129 // -- validation code for: _JSeqList
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130 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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131 fieldValidator.setMinOccurs(1);
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132 { // -- local scope
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134 desc.setValidator(fieldValidator);
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136 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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137 jalview.schemabinding.version2.JGroup.class, "_JGroupList",
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138 "JGroup", org.exolab.castor.xml.NodeType.Element);
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139 handler = new org.exolab.castor.xml.XMLFieldHandler()
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141 public java.lang.Object getValue(java.lang.Object object)
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142 throws IllegalStateException
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144 JalviewModelSequence target = (JalviewModelSequence) object;
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145 return target.getJGroup();
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148 public void setValue(java.lang.Object object, java.lang.Object value)
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149 throws IllegalStateException, IllegalArgumentException
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153 JalviewModelSequence target = (JalviewModelSequence) object;
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154 target.addJGroup((jalview.schemabinding.version2.JGroup) value);
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155 } catch (java.lang.Exception ex)
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157 throw new IllegalStateException(ex.toString());
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161 public void resetValue(Object object) throws IllegalStateException,
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162 IllegalArgumentException
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166 JalviewModelSequence target = (JalviewModelSequence) object;
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167 target.removeAllJGroup();
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168 } catch (java.lang.Exception ex)
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170 throw new IllegalStateException(ex.toString());
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174 public java.lang.Object newInstance(java.lang.Object parent)
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176 return new jalview.schemabinding.version2.JGroup();
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179 desc.setHandler(handler);
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180 desc.setNameSpaceURI("www.jalview.org");
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181 desc.setMultivalued(true);
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182 addFieldDescriptor(desc);
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184 // -- validation code for: _JGroupList
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185 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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186 fieldValidator.setMinOccurs(0);
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187 { // -- local scope
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189 desc.setValidator(fieldValidator);
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190 // -- _viewportList
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191 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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192 jalview.schemabinding.version2.Viewport.class, "_viewportList",
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193 "Viewport", org.exolab.castor.xml.NodeType.Element);
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194 handler = new org.exolab.castor.xml.XMLFieldHandler()
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196 public java.lang.Object getValue(java.lang.Object object)
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197 throws IllegalStateException
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199 JalviewModelSequence target = (JalviewModelSequence) object;
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200 return target.getViewport();
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203 public void setValue(java.lang.Object object, java.lang.Object value)
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204 throws IllegalStateException, IllegalArgumentException
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208 JalviewModelSequence target = (JalviewModelSequence) object;
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210 .addViewport((jalview.schemabinding.version2.Viewport) value);
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211 } catch (java.lang.Exception ex)
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213 throw new IllegalStateException(ex.toString());
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217 public void resetValue(Object object) throws IllegalStateException,
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218 IllegalArgumentException
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222 JalviewModelSequence target = (JalviewModelSequence) object;
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223 target.removeAllViewport();
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224 } catch (java.lang.Exception ex)
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226 throw new IllegalStateException(ex.toString());
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230 public java.lang.Object newInstance(java.lang.Object parent)
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232 return new jalview.schemabinding.version2.Viewport();
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235 desc.setHandler(handler);
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236 desc.setNameSpaceURI("www.jalview.org");
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237 desc.setRequired(true);
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238 desc.setMultivalued(true);
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239 addFieldDescriptor(desc);
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241 // -- validation code for: _viewportList
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242 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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243 fieldValidator.setMinOccurs(1);
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244 { // -- local scope
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246 desc.setValidator(fieldValidator);
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247 // -- _userColoursList
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248 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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249 jalview.schemabinding.version2.UserColours.class,
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250 "_userColoursList", "UserColours",
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251 org.exolab.castor.xml.NodeType.Element);
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252 handler = new org.exolab.castor.xml.XMLFieldHandler()
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254 public java.lang.Object getValue(java.lang.Object object)
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255 throws IllegalStateException
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257 JalviewModelSequence target = (JalviewModelSequence) object;
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258 return target.getUserColours();
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261 public void setValue(java.lang.Object object, java.lang.Object value)
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262 throws IllegalStateException, IllegalArgumentException
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266 JalviewModelSequence target = (JalviewModelSequence) object;
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268 .addUserColours((jalview.schemabinding.version2.UserColours) value);
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269 } catch (java.lang.Exception ex)
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271 throw new IllegalStateException(ex.toString());
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275 public void resetValue(Object object) throws IllegalStateException,
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276 IllegalArgumentException
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280 JalviewModelSequence target = (JalviewModelSequence) object;
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281 target.removeAllUserColours();
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282 } catch (java.lang.Exception ex)
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284 throw new IllegalStateException(ex.toString());
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288 public java.lang.Object newInstance(java.lang.Object parent)
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290 return new jalview.schemabinding.version2.UserColours();
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293 desc.setHandler(handler);
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294 desc.setNameSpaceURI("www.jalview.org");
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295 desc.setMultivalued(true);
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296 addFieldDescriptor(desc);
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298 // -- validation code for: _userColoursList
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299 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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300 fieldValidator.setMinOccurs(0);
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301 { // -- local scope
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303 desc.setValidator(fieldValidator);
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305 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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306 jalview.schemabinding.version2.Tree.class, "_treeList", "tree",
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307 org.exolab.castor.xml.NodeType.Element);
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308 handler = new org.exolab.castor.xml.XMLFieldHandler()
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310 public java.lang.Object getValue(java.lang.Object object)
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311 throws IllegalStateException
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313 JalviewModelSequence target = (JalviewModelSequence) object;
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314 return target.getTree();
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317 public void setValue(java.lang.Object object, java.lang.Object value)
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318 throws IllegalStateException, IllegalArgumentException
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322 JalviewModelSequence target = (JalviewModelSequence) object;
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323 target.addTree((jalview.schemabinding.version2.Tree) value);
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324 } catch (java.lang.Exception ex)
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326 throw new IllegalStateException(ex.toString());
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330 public void resetValue(Object object) throws IllegalStateException,
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331 IllegalArgumentException
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335 JalviewModelSequence target = (JalviewModelSequence) object;
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336 target.removeAllTree();
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337 } catch (java.lang.Exception ex)
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339 throw new IllegalStateException(ex.toString());
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343 public java.lang.Object newInstance(java.lang.Object parent)
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345 return new jalview.schemabinding.version2.Tree();
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348 desc.setHandler(handler);
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349 desc.setNameSpaceURI("www.jalview.org");
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350 desc.setMultivalued(true);
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351 addFieldDescriptor(desc);
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353 // -- validation code for: _treeList
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354 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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355 fieldValidator.setMinOccurs(0);
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356 { // -- local scope
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358 desc.setValidator(fieldValidator);
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359 // -- _featureSettings
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360 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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361 jalview.schemabinding.version2.FeatureSettings.class,
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362 "_featureSettings", "FeatureSettings",
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363 org.exolab.castor.xml.NodeType.Element);
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364 handler = new org.exolab.castor.xml.XMLFieldHandler()
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366 public java.lang.Object getValue(java.lang.Object object)
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367 throws IllegalStateException
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369 JalviewModelSequence target = (JalviewModelSequence) object;
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370 return target.getFeatureSettings();
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373 public void setValue(java.lang.Object object, java.lang.Object value)
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374 throws IllegalStateException, IllegalArgumentException
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378 JalviewModelSequence target = (JalviewModelSequence) object;
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380 .setFeatureSettings((jalview.schemabinding.version2.FeatureSettings) value);
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381 } catch (java.lang.Exception ex)
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383 throw new IllegalStateException(ex.toString());
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387 public java.lang.Object newInstance(java.lang.Object parent)
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389 return new jalview.schemabinding.version2.FeatureSettings();
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392 desc.setHandler(handler);
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393 desc.setNameSpaceURI("www.jalview.org");
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394 desc.setMultivalued(false);
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395 addFieldDescriptor(desc);
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397 // -- validation code for: _featureSettings
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398 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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399 { // -- local scope
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401 desc.setValidator(fieldValidator);
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409 * Method getAccessMode.
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411 * @return the access mode specified for this class.
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413 public org.exolab.castor.mapping.AccessMode getAccessMode()
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419 * Method getIdentity.
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421 * @return the identity field, null if this class has no identity.
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423 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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425 return super.getIdentity();
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429 * Method getJavaClass.
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431 * @return the Java class represented by this descriptor.
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433 public java.lang.Class getJavaClass()
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435 return jalview.schemabinding.version2.JalviewModelSequence.class;
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439 * Method getNameSpacePrefix.
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441 * @return the namespace prefix to use when marshaling as XML.
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443 public java.lang.String getNameSpacePrefix()
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449 * Method getNameSpaceURI.
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451 * @return the namespace URI used when marshaling and unmarshaling as XML.
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453 public java.lang.String getNameSpaceURI()
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459 * Method getValidator.
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461 * @return a specific validator for the class described by this
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464 public org.exolab.castor.xml.TypeValidator getValidator()
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470 * Method getXMLName.
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472 * @return the XML Name for the Class being described.
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474 public java.lang.String getXMLName()
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480 * Method isElementDefinition.
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482 * @return true if XML schema definition of this Class is that of a global
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483 * element or element with anonymous type definition.
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485 public boolean isElementDefinition()
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487 return _elementDefinition;
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