1 /*******************************************************************************
2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
3 * Copyright (C) 2011 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 *******************************************************************************/
19 * This class was automatically generated with
20 * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
25 package jalview.schemabinding.version2.descriptors;
27 //---------------------------------/
28 //- Imported classes and packages -/
29 //---------------------------------/
31 import jalview.schemabinding.version2.JalviewModelSequence;
34 * Class JalviewModelSequenceDescriptor.
36 * @version $Revision$ $Date$
38 public class JalviewModelSequenceDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
41 //--------------------------/
42 //- Class/Member Variables -/
43 //--------------------------/
46 * Field _elementDefinition.
48 private boolean _elementDefinition;
53 private java.lang.String _nsPrefix;
58 private java.lang.String _nsURI;
63 private java.lang.String _xmlName;
70 public JalviewModelSequenceDescriptor() {
72 _nsURI = "www.jalview.org";
73 _elementDefinition = false;
75 //-- set grouping compositor
76 setCompositorAsSequence();
77 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
78 org.exolab.castor.mapping.FieldHandler handler = null;
79 org.exolab.castor.xml.FieldValidator fieldValidator = null;
80 //-- initialize attribute descriptors
82 //-- initialize element descriptors
85 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.JSeq.class, "_JSeqList", "JSeq", org.exolab.castor.xml.NodeType.Element);
86 handler = new org.exolab.castor.xml.XMLFieldHandler() {
87 public java.lang.Object getValue( java.lang.Object object )
88 throws IllegalStateException
90 JalviewModelSequence target = (JalviewModelSequence) object;
91 return target.getJSeq();
93 public void setValue( java.lang.Object object, java.lang.Object value)
94 throws IllegalStateException, IllegalArgumentException
97 JalviewModelSequence target = (JalviewModelSequence) object;
98 target.addJSeq( (jalview.schemabinding.version2.JSeq) value);
99 } catch (java.lang.Exception ex) {
100 throw new IllegalStateException(ex.toString());
103 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
105 JalviewModelSequence target = (JalviewModelSequence) object;
106 target.removeAllJSeq();
107 } catch (java.lang.Exception ex) {
108 throw new IllegalStateException(ex.toString());
111 public java.lang.Object newInstance(java.lang.Object parent) {
112 return new jalview.schemabinding.version2.JSeq();
115 desc.setHandler(handler);
116 desc.setNameSpaceURI("www.jalview.org");
117 desc.setRequired(true);
118 desc.setMultivalued(true);
119 addFieldDescriptor(desc);
121 //-- validation code for: _JSeqList
122 fieldValidator = new org.exolab.castor.xml.FieldValidator();
123 fieldValidator.setMinOccurs(1);
126 desc.setValidator(fieldValidator);
128 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.JGroup.class, "_JGroupList", "JGroup", org.exolab.castor.xml.NodeType.Element);
129 handler = new org.exolab.castor.xml.XMLFieldHandler() {
130 public java.lang.Object getValue( java.lang.Object object )
131 throws IllegalStateException
133 JalviewModelSequence target = (JalviewModelSequence) object;
134 return target.getJGroup();
136 public void setValue( java.lang.Object object, java.lang.Object value)
137 throws IllegalStateException, IllegalArgumentException
140 JalviewModelSequence target = (JalviewModelSequence) object;
141 target.addJGroup( (jalview.schemabinding.version2.JGroup) value);
142 } catch (java.lang.Exception ex) {
143 throw new IllegalStateException(ex.toString());
146 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
148 JalviewModelSequence target = (JalviewModelSequence) object;
149 target.removeAllJGroup();
150 } catch (java.lang.Exception ex) {
151 throw new IllegalStateException(ex.toString());
154 public java.lang.Object newInstance(java.lang.Object parent) {
155 return new jalview.schemabinding.version2.JGroup();
158 desc.setHandler(handler);
159 desc.setNameSpaceURI("www.jalview.org");
160 desc.setMultivalued(true);
161 addFieldDescriptor(desc);
163 //-- validation code for: _JGroupList
164 fieldValidator = new org.exolab.castor.xml.FieldValidator();
165 fieldValidator.setMinOccurs(0);
168 desc.setValidator(fieldValidator);
170 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Viewport.class, "_viewportList", "Viewport", org.exolab.castor.xml.NodeType.Element);
171 handler = new org.exolab.castor.xml.XMLFieldHandler() {
172 public java.lang.Object getValue( java.lang.Object object )
173 throws IllegalStateException
175 JalviewModelSequence target = (JalviewModelSequence) object;
176 return target.getViewport();
178 public void setValue( java.lang.Object object, java.lang.Object value)
179 throws IllegalStateException, IllegalArgumentException
182 JalviewModelSequence target = (JalviewModelSequence) object;
183 target.addViewport( (jalview.schemabinding.version2.Viewport) value);
184 } catch (java.lang.Exception ex) {
185 throw new IllegalStateException(ex.toString());
188 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
190 JalviewModelSequence target = (JalviewModelSequence) object;
191 target.removeAllViewport();
192 } catch (java.lang.Exception ex) {
193 throw new IllegalStateException(ex.toString());
196 public java.lang.Object newInstance(java.lang.Object parent) {
197 return new jalview.schemabinding.version2.Viewport();
200 desc.setHandler(handler);
201 desc.setNameSpaceURI("www.jalview.org");
202 desc.setRequired(true);
203 desc.setMultivalued(true);
204 addFieldDescriptor(desc);
206 //-- validation code for: _viewportList
207 fieldValidator = new org.exolab.castor.xml.FieldValidator();
208 fieldValidator.setMinOccurs(1);
211 desc.setValidator(fieldValidator);
212 //-- _userColoursList
213 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.UserColours.class, "_userColoursList", "UserColours", org.exolab.castor.xml.NodeType.Element);
214 handler = new org.exolab.castor.xml.XMLFieldHandler() {
215 public java.lang.Object getValue( java.lang.Object object )
216 throws IllegalStateException
218 JalviewModelSequence target = (JalviewModelSequence) object;
219 return target.getUserColours();
221 public void setValue( java.lang.Object object, java.lang.Object value)
222 throws IllegalStateException, IllegalArgumentException
225 JalviewModelSequence target = (JalviewModelSequence) object;
226 target.addUserColours( (jalview.schemabinding.version2.UserColours) value);
227 } catch (java.lang.Exception ex) {
228 throw new IllegalStateException(ex.toString());
231 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
233 JalviewModelSequence target = (JalviewModelSequence) object;
234 target.removeAllUserColours();
235 } catch (java.lang.Exception ex) {
236 throw new IllegalStateException(ex.toString());
239 public java.lang.Object newInstance(java.lang.Object parent) {
240 return new jalview.schemabinding.version2.UserColours();
243 desc.setHandler(handler);
244 desc.setNameSpaceURI("www.jalview.org");
245 desc.setMultivalued(true);
246 addFieldDescriptor(desc);
248 //-- validation code for: _userColoursList
249 fieldValidator = new org.exolab.castor.xml.FieldValidator();
250 fieldValidator.setMinOccurs(0);
253 desc.setValidator(fieldValidator);
255 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Tree.class, "_treeList", "tree", org.exolab.castor.xml.NodeType.Element);
256 handler = new org.exolab.castor.xml.XMLFieldHandler() {
257 public java.lang.Object getValue( java.lang.Object object )
258 throws IllegalStateException
260 JalviewModelSequence target = (JalviewModelSequence) object;
261 return target.getTree();
263 public void setValue( java.lang.Object object, java.lang.Object value)
264 throws IllegalStateException, IllegalArgumentException
267 JalviewModelSequence target = (JalviewModelSequence) object;
268 target.addTree( (jalview.schemabinding.version2.Tree) value);
269 } catch (java.lang.Exception ex) {
270 throw new IllegalStateException(ex.toString());
273 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
275 JalviewModelSequence target = (JalviewModelSequence) object;
276 target.removeAllTree();
277 } catch (java.lang.Exception ex) {
278 throw new IllegalStateException(ex.toString());
281 public java.lang.Object newInstance(java.lang.Object parent) {
282 return new jalview.schemabinding.version2.Tree();
285 desc.setHandler(handler);
286 desc.setNameSpaceURI("www.jalview.org");
287 desc.setMultivalued(true);
288 addFieldDescriptor(desc);
290 //-- validation code for: _treeList
291 fieldValidator = new org.exolab.castor.xml.FieldValidator();
292 fieldValidator.setMinOccurs(0);
295 desc.setValidator(fieldValidator);
296 //-- _featureSettings
297 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.FeatureSettings.class, "_featureSettings", "FeatureSettings", org.exolab.castor.xml.NodeType.Element);
298 handler = new org.exolab.castor.xml.XMLFieldHandler() {
299 public java.lang.Object getValue( java.lang.Object object )
300 throws IllegalStateException
302 JalviewModelSequence target = (JalviewModelSequence) object;
303 return target.getFeatureSettings();
305 public void setValue( java.lang.Object object, java.lang.Object value)
306 throws IllegalStateException, IllegalArgumentException
309 JalviewModelSequence target = (JalviewModelSequence) object;
310 target.setFeatureSettings( (jalview.schemabinding.version2.FeatureSettings) value);
311 } catch (java.lang.Exception ex) {
312 throw new IllegalStateException(ex.toString());
315 public java.lang.Object newInstance(java.lang.Object parent) {
316 return new jalview.schemabinding.version2.FeatureSettings();
319 desc.setHandler(handler);
320 desc.setNameSpaceURI("www.jalview.org");
321 desc.setMultivalued(false);
322 addFieldDescriptor(desc);
324 //-- validation code for: _featureSettings
325 fieldValidator = new org.exolab.castor.xml.FieldValidator();
328 desc.setValidator(fieldValidator);
337 * Method getAccessMode.
339 * @return the access mode specified for this class.
341 public org.exolab.castor.mapping.AccessMode getAccessMode(
347 * Method getIdentity.
349 * @return the identity field, null if this class has no
352 public org.exolab.castor.mapping.FieldDescriptor getIdentity(
354 return super.getIdentity();
358 * Method getJavaClass.
360 * @return the Java class represented by this descriptor.
362 public java.lang.Class getJavaClass(
364 return jalview.schemabinding.version2.JalviewModelSequence.class;
368 * Method getNameSpacePrefix.
370 * @return the namespace prefix to use when marshaling as XML.
372 public java.lang.String getNameSpacePrefix(
378 * Method getNameSpaceURI.
380 * @return the namespace URI used when marshaling and
381 * unmarshaling as XML.
383 public java.lang.String getNameSpaceURI(
389 * Method getValidator.
391 * @return a specific validator for the class described by this
394 public org.exolab.castor.xml.TypeValidator getValidator(
402 * @return the XML Name for the Class being described.
404 public java.lang.String getXMLName(
410 * Method isElementDefinition.
412 * @return true if XML schema definition of this Class is that
414 * element or element with anonymous type definition.
416 public boolean isElementDefinition(
418 return _elementDefinition;