2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.5)
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3 * Copyright (C) 2010 J Procter, AM Waterhouse, G Barton, M Clamp, S Searle
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5 * This file is part of Jalview.
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7 * Jalview is free software: you can redistribute it and/or
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8 * modify it under the terms of the GNU General Public License
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9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
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11 * Jalview is distributed in the hope that it will be useful, but
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12 * WITHOUT ANY WARRANTY; without even the implied warranty
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13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
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14 * PURPOSE. See the GNU General Public License for more details.
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16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
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18 package jalview.schemabinding.version2.descriptors;
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20 //---------------------------------/
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21 //- Imported classes and packages -/
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22 //---------------------------------/
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24 import jalview.schemabinding.version2.Pdbids;
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27 * Class PdbidsDescriptor.
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29 * @version $Revision$ $Date$
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31 public class PdbidsDescriptor extends
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32 jalview.schemabinding.version2.descriptors.PdbentryDescriptor
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35 // --------------------------/
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36 // - Class/Member Variables -/
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37 // --------------------------/
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40 * Field _elementDefinition.
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42 private boolean _elementDefinition;
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47 private java.lang.String _nsPrefix;
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52 private java.lang.String _nsURI;
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57 private java.lang.String _xmlName;
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59 // ----------------/
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60 // - Constructors -/
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61 // ----------------/
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63 public PdbidsDescriptor()
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66 setExtendsWithoutFlatten(new jalview.schemabinding.version2.descriptors.PdbentryDescriptor());
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67 _nsURI = "www.jalview.org";
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68 _xmlName = "pdbids";
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69 _elementDefinition = true;
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71 // -- set grouping compositor
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72 setCompositorAsSequence();
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73 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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74 org.exolab.castor.mapping.FieldHandler handler = null;
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75 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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76 // -- initialize attribute descriptors
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78 // -- initialize element descriptors
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80 // -- _structureStateList
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81 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
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82 jalview.schemabinding.version2.StructureState.class,
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83 "_structureStateList", "structureState",
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84 org.exolab.castor.xml.NodeType.Element);
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85 handler = new org.exolab.castor.xml.XMLFieldHandler()
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87 public java.lang.Object getValue(java.lang.Object object)
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88 throws IllegalStateException
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90 Pdbids target = (Pdbids) object;
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91 return target.getStructureState();
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94 public void setValue(java.lang.Object object, java.lang.Object value)
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95 throws IllegalStateException, IllegalArgumentException
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99 Pdbids target = (Pdbids) object;
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101 .addStructureState((jalview.schemabinding.version2.StructureState) value);
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102 } catch (java.lang.Exception ex)
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104 throw new IllegalStateException(ex.toString());
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108 public void resetValue(Object object) throws IllegalStateException,
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109 IllegalArgumentException
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113 Pdbids target = (Pdbids) object;
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114 target.removeAllStructureState();
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115 } catch (java.lang.Exception ex)
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117 throw new IllegalStateException(ex.toString());
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121 public java.lang.Object newInstance(java.lang.Object parent)
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123 return new jalview.schemabinding.version2.StructureState();
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126 desc.setHandler(handler);
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127 desc.setNameSpaceURI("www.jalview.org");
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128 desc.setMultivalued(true);
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129 addFieldDescriptor(desc);
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131 // -- validation code for: _structureStateList
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132 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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133 fieldValidator.setMinOccurs(0);
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134 { // -- local scope
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136 desc.setValidator(fieldValidator);
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144 * Method getAccessMode.
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146 * @return the access mode specified for this class.
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148 public org.exolab.castor.mapping.AccessMode getAccessMode()
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154 * Method getIdentity.
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156 * @return the identity field, null if this class has no identity.
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158 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
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160 return super.getIdentity();
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164 * Method getJavaClass.
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166 * @return the Java class represented by this descriptor.
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168 public java.lang.Class getJavaClass()
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170 return jalview.schemabinding.version2.Pdbids.class;
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174 * Method getNameSpacePrefix.
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176 * @return the namespace prefix to use when marshaling as XML.
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178 public java.lang.String getNameSpacePrefix()
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184 * Method getNameSpaceURI.
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186 * @return the namespace URI used when marshaling and unmarshaling as XML.
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188 public java.lang.String getNameSpaceURI()
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194 * Method getValidator.
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196 * @return a specific validator for the class described by this
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199 public org.exolab.castor.xml.TypeValidator getValidator()
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205 * Method getXMLName.
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207 * @return the XML Name for the Class being described.
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209 public java.lang.String getXMLName()
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215 * Method isElementDefinition.
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217 * @return true if XML schema definition of this Class is that of a global
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218 * element or element with anonymous type definition.
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220 public boolean isElementDefinition()
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222 return _elementDefinition;
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