2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8)
3 * Copyright (C) 2012 J Procter, AM Waterhouse, LM Lui, J Engelhardt, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
18 package jalview.schemabinding.version2.descriptors;
20 //---------------------------------/
21 //- Imported classes and packages -/
22 //---------------------------------/
24 import jalview.schemabinding.version2.Pdbids;
27 * Class PdbidsDescriptor.
29 * @version $Revision$ $Date$
31 public class PdbidsDescriptor extends
32 jalview.schemabinding.version2.descriptors.PdbentryDescriptor
35 // --------------------------/
36 // - Class/Member Variables -/
37 // --------------------------/
40 * Field _elementDefinition.
42 private boolean _elementDefinition;
47 private java.lang.String _nsPrefix;
52 private java.lang.String _nsURI;
57 private java.lang.String _xmlName;
63 public PdbidsDescriptor()
66 setExtendsWithoutFlatten(new jalview.schemabinding.version2.descriptors.PdbentryDescriptor());
67 _nsURI = "www.jalview.org";
69 _elementDefinition = true;
71 // -- set grouping compositor
72 setCompositorAsSequence();
73 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
74 org.exolab.castor.mapping.FieldHandler handler = null;
75 org.exolab.castor.xml.FieldValidator fieldValidator = null;
76 // -- initialize attribute descriptors
78 // -- initialize element descriptors
80 // -- _structureStateList
81 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
82 jalview.schemabinding.version2.StructureState.class,
83 "_structureStateList", "structureState",
84 org.exolab.castor.xml.NodeType.Element);
85 handler = new org.exolab.castor.xml.XMLFieldHandler()
87 public java.lang.Object getValue(java.lang.Object object)
88 throws IllegalStateException
90 Pdbids target = (Pdbids) object;
91 return target.getStructureState();
94 public void setValue(java.lang.Object object, java.lang.Object value)
95 throws IllegalStateException, IllegalArgumentException
99 Pdbids target = (Pdbids) object;
100 target.addStructureState((jalview.schemabinding.version2.StructureState) value);
101 } catch (java.lang.Exception ex)
103 throw new IllegalStateException(ex.toString());
107 public void resetValue(Object object) throws IllegalStateException,
108 IllegalArgumentException
112 Pdbids target = (Pdbids) object;
113 target.removeAllStructureState();
114 } catch (java.lang.Exception ex)
116 throw new IllegalStateException(ex.toString());
120 public java.lang.Object newInstance(java.lang.Object parent)
122 return new jalview.schemabinding.version2.StructureState();
125 desc.setHandler(handler);
126 desc.setNameSpaceURI("www.jalview.org");
127 desc.setMultivalued(true);
128 addFieldDescriptor(desc);
130 // -- validation code for: _structureStateList
131 fieldValidator = new org.exolab.castor.xml.FieldValidator();
132 fieldValidator.setMinOccurs(0);
135 desc.setValidator(fieldValidator);
143 * Method getAccessMode.
145 * @return the access mode specified for this class.
147 public org.exolab.castor.mapping.AccessMode getAccessMode()
153 * Method getIdentity.
155 * @return the identity field, null if this class has no identity.
157 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
159 return super.getIdentity();
163 * Method getJavaClass.
165 * @return the Java class represented by this descriptor.
167 public java.lang.Class getJavaClass()
169 return jalview.schemabinding.version2.Pdbids.class;
173 * Method getNameSpacePrefix.
175 * @return the namespace prefix to use when marshaling as XML.
177 public java.lang.String getNameSpacePrefix()
183 * Method getNameSpaceURI.
185 * @return the namespace URI used when marshaling and unmarshaling as XML.
187 public java.lang.String getNameSpaceURI()
193 * Method getValidator.
195 * @return a specific validator for the class described by this
198 public org.exolab.castor.xml.TypeValidator getValidator()
206 * @return the XML Name for the Class being described.
208 public java.lang.String getXMLName()
214 * Method isElementDefinition.
216 * @return true if XML schema definition of this Class is that of a global
217 * element or element with anonymous type definition.
219 public boolean isElementDefinition()
221 return _elementDefinition;