1 /*******************************************************************************
2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.8.1)
3 * Copyright (C) 2014 The Jalview Authors
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview.
17 * If not, see <http://www.gnu.org/licenses/>.
18 * The Jalview Authors are detailed in the 'AUTHORS' file.
19 ******************************************************************************/
21 * This class was automatically generated with
22 * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
27 package jalview.schemabinding.version2.descriptors;
29 //---------------------------------/
30 //- Imported classes and packages -/
31 //---------------------------------/
33 import jalview.schemabinding.version2.Sequence;
36 * Class SequenceDescriptor.
38 * @version $Revision$ $Date$
40 public class SequenceDescriptor extends
41 jalview.schemabinding.version2.descriptors.SequenceTypeDescriptor
44 // --------------------------/
45 // - Class/Member Variables -/
46 // --------------------------/
49 * Field _elementDefinition.
51 private boolean _elementDefinition;
56 private java.lang.String _nsPrefix;
61 private java.lang.String _nsURI;
66 private java.lang.String _xmlName;
72 public SequenceDescriptor()
75 setExtendsWithoutFlatten(new jalview.schemabinding.version2.descriptors.SequenceTypeDescriptor());
76 _nsURI = "www.vamsas.ac.uk/jalview/version2";
77 _xmlName = "Sequence";
78 _elementDefinition = true;
80 // -- set grouping compositor
81 setCompositorAsSequence();
82 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
83 org.exolab.castor.mapping.FieldHandler handler = null;
84 org.exolab.castor.xml.FieldValidator fieldValidator = null;
85 // -- initialize attribute descriptors
88 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
89 java.lang.String.class, "_dsseqid", "dsseqid",
90 org.exolab.castor.xml.NodeType.Attribute);
91 desc.setImmutable(true);
92 handler = new org.exolab.castor.xml.XMLFieldHandler()
94 public java.lang.Object getValue(java.lang.Object object)
95 throws IllegalStateException
97 Sequence target = (Sequence) object;
98 return target.getDsseqid();
101 public void setValue(java.lang.Object object, java.lang.Object value)
102 throws IllegalStateException, IllegalArgumentException
106 Sequence target = (Sequence) object;
107 target.setDsseqid((java.lang.String) value);
108 } catch (java.lang.Exception ex)
110 throw new IllegalStateException(ex.toString());
114 public java.lang.Object newInstance(java.lang.Object parent)
119 desc.setHandler(handler);
120 desc.setMultivalued(false);
121 addFieldDescriptor(desc);
123 // -- validation code for: _dsseqid
124 fieldValidator = new org.exolab.castor.xml.FieldValidator();
126 org.exolab.castor.xml.validators.StringValidator typeValidator;
127 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
128 fieldValidator.setValidator(typeValidator);
129 typeValidator.setWhiteSpace("preserve");
131 desc.setValidator(fieldValidator);
132 // -- initialize element descriptors
135 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
136 jalview.schemabinding.version2.DBRef.class, "_DBRefList",
137 "DBRef", org.exolab.castor.xml.NodeType.Element);
138 handler = new org.exolab.castor.xml.XMLFieldHandler()
140 public java.lang.Object getValue(java.lang.Object object)
141 throws IllegalStateException
143 Sequence target = (Sequence) object;
144 return target.getDBRef();
147 public void setValue(java.lang.Object object, java.lang.Object value)
148 throws IllegalStateException, IllegalArgumentException
152 Sequence target = (Sequence) object;
153 target.addDBRef((jalview.schemabinding.version2.DBRef) value);
154 } catch (java.lang.Exception ex)
156 throw new IllegalStateException(ex.toString());
160 public void resetValue(Object object) throws IllegalStateException,
161 IllegalArgumentException
165 Sequence target = (Sequence) object;
166 target.removeAllDBRef();
167 } catch (java.lang.Exception ex)
169 throw new IllegalStateException(ex.toString());
173 public java.lang.Object newInstance(java.lang.Object parent)
175 return new jalview.schemabinding.version2.DBRef();
178 desc.setHandler(handler);
179 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
180 desc.setMultivalued(true);
181 addFieldDescriptor(desc);
183 // -- validation code for: _DBRefList
184 fieldValidator = new org.exolab.castor.xml.FieldValidator();
185 fieldValidator.setMinOccurs(0);
188 desc.setValidator(fieldValidator);
196 * Method getAccessMode.
198 * @return the access mode specified for this class.
200 public org.exolab.castor.mapping.AccessMode getAccessMode()
206 * Method getIdentity.
208 * @return the identity field, null if this class has no identity.
210 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
212 return super.getIdentity();
216 * Method getJavaClass.
218 * @return the Java class represented by this descriptor.
220 public java.lang.Class getJavaClass()
222 return jalview.schemabinding.version2.Sequence.class;
226 * Method getNameSpacePrefix.
228 * @return the namespace prefix to use when marshaling as XML.
230 public java.lang.String getNameSpacePrefix()
236 * Method getNameSpaceURI.
238 * @return the namespace URI used when marshaling and unmarshaling as XML.
240 public java.lang.String getNameSpaceURI()
246 * Method getValidator.
248 * @return a specific validator for the class described by this
251 public org.exolab.castor.xml.TypeValidator getValidator()
259 * @return the XML Name for the Class being described.
261 public java.lang.String getXMLName()
267 * Method isElementDefinition.
269 * @return true if XML schema definition of this Class is that of a global
270 * element or element with anonymous type definition.
272 public boolean isElementDefinition()
274 return _elementDefinition;