2 * This class was automatically generated with
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3 * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
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8 package jalview.schemabinding.version2.descriptors;
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10 //---------------------------------/
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11 //- Imported classes and packages -/
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12 //---------------------------------/
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14 import jalview.schemabinding.version2.SequenceSet;
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17 * Class SequenceSetDescriptor.
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19 * @version $Revision$ $Date$
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21 public class SequenceSetDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
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24 //--------------------------/
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25 //- Class/Member Variables -/
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26 //--------------------------/
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29 * Field _elementDefinition.
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31 private boolean _elementDefinition;
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36 private java.lang.String _nsPrefix;
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41 private java.lang.String _nsURI;
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46 private java.lang.String _xmlName;
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53 public SequenceSetDescriptor() {
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55 _nsURI = "www.vamsas.ac.uk/jalview/version2";
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56 _xmlName = "SequenceSet";
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57 _elementDefinition = true;
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59 //-- set grouping compositor
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60 setCompositorAsSequence();
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61 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
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62 org.exolab.castor.mapping.FieldHandler handler = null;
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63 org.exolab.castor.xml.FieldValidator fieldValidator = null;
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64 //-- initialize attribute descriptors
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67 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_gapChar", "gapChar", org.exolab.castor.xml.NodeType.Attribute);
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68 desc.setImmutable(true);
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69 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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70 public java.lang.Object getValue( java.lang.Object object )
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71 throws IllegalStateException
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73 SequenceSet target = (SequenceSet) object;
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74 return target.getGapChar();
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76 public void setValue( java.lang.Object object, java.lang.Object value)
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77 throws IllegalStateException, IllegalArgumentException
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80 SequenceSet target = (SequenceSet) object;
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81 target.setGapChar( (java.lang.String) value);
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82 } catch (java.lang.Exception ex) {
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83 throw new IllegalStateException(ex.toString());
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86 public java.lang.Object newInstance(java.lang.Object parent) {
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90 desc.setHandler(handler);
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91 desc.setRequired(true);
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92 desc.setMultivalued(false);
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93 addFieldDescriptor(desc);
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95 //-- validation code for: _gapChar
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96 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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97 fieldValidator.setMinOccurs(1);
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99 org.exolab.castor.xml.validators.StringValidator typeValidator;
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100 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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101 fieldValidator.setValidator(typeValidator);
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102 typeValidator.setWhiteSpace("preserve");
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104 desc.setValidator(fieldValidator);
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106 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_datasetId", "datasetId", org.exolab.castor.xml.NodeType.Attribute);
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107 desc.setImmutable(true);
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108 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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109 public java.lang.Object getValue( java.lang.Object object )
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110 throws IllegalStateException
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112 SequenceSet target = (SequenceSet) object;
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113 return target.getDatasetId();
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115 public void setValue( java.lang.Object object, java.lang.Object value)
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116 throws IllegalStateException, IllegalArgumentException
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119 SequenceSet target = (SequenceSet) object;
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120 target.setDatasetId( (java.lang.String) value);
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121 } catch (java.lang.Exception ex) {
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122 throw new IllegalStateException(ex.toString());
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125 public java.lang.Object newInstance(java.lang.Object parent) {
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129 desc.setHandler(handler);
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130 desc.setMultivalued(false);
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131 addFieldDescriptor(desc);
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133 //-- validation code for: _datasetId
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134 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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136 org.exolab.castor.xml.validators.StringValidator typeValidator;
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137 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
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138 fieldValidator.setValidator(typeValidator);
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139 typeValidator.setWhiteSpace("preserve");
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141 desc.setValidator(fieldValidator);
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142 //-- initialize element descriptors
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145 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Sequence.class, "_sequenceList", "Sequence", org.exolab.castor.xml.NodeType.Element);
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146 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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147 public java.lang.Object getValue( java.lang.Object object )
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148 throws IllegalStateException
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150 SequenceSet target = (SequenceSet) object;
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151 return target.getSequence();
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153 public void setValue( java.lang.Object object, java.lang.Object value)
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154 throws IllegalStateException, IllegalArgumentException
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157 SequenceSet target = (SequenceSet) object;
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158 target.addSequence( (jalview.schemabinding.version2.Sequence) value);
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159 } catch (java.lang.Exception ex) {
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160 throw new IllegalStateException(ex.toString());
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163 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
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165 SequenceSet target = (SequenceSet) object;
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166 target.removeAllSequence();
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167 } catch (java.lang.Exception ex) {
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168 throw new IllegalStateException(ex.toString());
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171 public java.lang.Object newInstance(java.lang.Object parent) {
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172 return new jalview.schemabinding.version2.Sequence();
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175 desc.setHandler(handler);
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176 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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177 desc.setMultivalued(true);
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178 addFieldDescriptor(desc);
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180 //-- validation code for: _sequenceList
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181 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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182 fieldValidator.setMinOccurs(0);
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185 desc.setValidator(fieldValidator);
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186 //-- _annotationList
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187 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.Annotation.class, "_annotationList", "Annotation", org.exolab.castor.xml.NodeType.Element);
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188 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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189 public java.lang.Object getValue( java.lang.Object object )
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190 throws IllegalStateException
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192 SequenceSet target = (SequenceSet) object;
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193 return target.getAnnotation();
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195 public void setValue( java.lang.Object object, java.lang.Object value)
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196 throws IllegalStateException, IllegalArgumentException
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199 SequenceSet target = (SequenceSet) object;
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200 target.addAnnotation( (jalview.schemabinding.version2.Annotation) value);
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201 } catch (java.lang.Exception ex) {
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202 throw new IllegalStateException(ex.toString());
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205 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
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207 SequenceSet target = (SequenceSet) object;
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208 target.removeAllAnnotation();
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209 } catch (java.lang.Exception ex) {
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210 throw new IllegalStateException(ex.toString());
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213 public java.lang.Object newInstance(java.lang.Object parent) {
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214 return new jalview.schemabinding.version2.Annotation();
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217 desc.setHandler(handler);
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218 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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219 desc.setMultivalued(true);
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220 addFieldDescriptor(desc);
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222 //-- validation code for: _annotationList
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223 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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224 fieldValidator.setMinOccurs(0);
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227 desc.setValidator(fieldValidator);
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228 //-- _sequenceSetPropertiesList
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229 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.SequenceSetProperties.class, "_sequenceSetPropertiesList", "sequenceSetProperties", org.exolab.castor.xml.NodeType.Element);
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230 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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231 public java.lang.Object getValue( java.lang.Object object )
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232 throws IllegalStateException
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234 SequenceSet target = (SequenceSet) object;
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235 return target.getSequenceSetProperties();
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237 public void setValue( java.lang.Object object, java.lang.Object value)
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238 throws IllegalStateException, IllegalArgumentException
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241 SequenceSet target = (SequenceSet) object;
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242 target.addSequenceSetProperties( (jalview.schemabinding.version2.SequenceSetProperties) value);
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243 } catch (java.lang.Exception ex) {
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244 throw new IllegalStateException(ex.toString());
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247 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
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249 SequenceSet target = (SequenceSet) object;
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250 target.removeAllSequenceSetProperties();
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251 } catch (java.lang.Exception ex) {
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252 throw new IllegalStateException(ex.toString());
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255 public java.lang.Object newInstance(java.lang.Object parent) {
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256 return new jalview.schemabinding.version2.SequenceSetProperties();
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259 desc.setHandler(handler);
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260 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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261 desc.setMultivalued(true);
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262 addFieldDescriptor(desc);
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264 //-- validation code for: _sequenceSetPropertiesList
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265 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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266 fieldValidator.setMinOccurs(0);
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269 desc.setValidator(fieldValidator);
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270 //-- _alcodonFrameList
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271 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(jalview.schemabinding.version2.AlcodonFrame.class, "_alcodonFrameList", "AlcodonFrame", org.exolab.castor.xml.NodeType.Element);
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272 handler = new org.exolab.castor.xml.XMLFieldHandler() {
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273 public java.lang.Object getValue( java.lang.Object object )
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274 throws IllegalStateException
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276 SequenceSet target = (SequenceSet) object;
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277 return target.getAlcodonFrame();
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279 public void setValue( java.lang.Object object, java.lang.Object value)
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280 throws IllegalStateException, IllegalArgumentException
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283 SequenceSet target = (SequenceSet) object;
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284 target.addAlcodonFrame( (jalview.schemabinding.version2.AlcodonFrame) value);
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285 } catch (java.lang.Exception ex) {
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286 throw new IllegalStateException(ex.toString());
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289 public void resetValue(Object object) throws IllegalStateException, IllegalArgumentException {
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291 SequenceSet target = (SequenceSet) object;
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292 target.removeAllAlcodonFrame();
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293 } catch (java.lang.Exception ex) {
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294 throw new IllegalStateException(ex.toString());
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297 public java.lang.Object newInstance(java.lang.Object parent) {
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298 return new jalview.schemabinding.version2.AlcodonFrame();
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301 desc.setHandler(handler);
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302 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
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303 desc.setMultivalued(true);
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304 addFieldDescriptor(desc);
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306 //-- validation code for: _alcodonFrameList
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307 fieldValidator = new org.exolab.castor.xml.FieldValidator();
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308 fieldValidator.setMinOccurs(0);
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311 desc.setValidator(fieldValidator);
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320 * Method getAccessMode.
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322 * @return the access mode specified for this class.
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324 public org.exolab.castor.mapping.AccessMode getAccessMode(
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330 * Method getIdentity.
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332 * @return the identity field, null if this class has no
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335 public org.exolab.castor.mapping.FieldDescriptor getIdentity(
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337 return super.getIdentity();
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341 * Method getJavaClass.
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343 * @return the Java class represented by this descriptor.
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345 public java.lang.Class getJavaClass(
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347 return jalview.schemabinding.version2.SequenceSet.class;
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351 * Method getNameSpacePrefix.
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353 * @return the namespace prefix to use when marshaling as XML.
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355 public java.lang.String getNameSpacePrefix(
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361 * Method getNameSpaceURI.
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363 * @return the namespace URI used when marshaling and
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364 * unmarshaling as XML.
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366 public java.lang.String getNameSpaceURI(
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372 * Method getValidator.
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374 * @return a specific validator for the class described by this
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377 public org.exolab.castor.xml.TypeValidator getValidator(
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383 * Method getXMLName.
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385 * @return the XML Name for the Class being described.
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387 public java.lang.String getXMLName(
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393 * Method isElementDefinition.
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395 * @return true if XML schema definition of this Class is that
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397 * element or element with anonymous type definition.
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399 public boolean isElementDefinition(
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401 return _elementDefinition;
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