2 * This class was automatically generated with
3 * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
8 package jalview.schemabinding.version2.descriptors;
10 //---------------------------------/
11 //- Imported classes and packages -/
12 //---------------------------------/
14 import jalview.schemabinding.version2.SequenceSet;
17 * Class SequenceSetDescriptor.
19 * @version $Revision$ $Date$
21 public class SequenceSetDescriptor extends
22 org.exolab.castor.xml.util.XMLClassDescriptorImpl
25 // --------------------------/
26 // - Class/Member Variables -/
27 // --------------------------/
30 * Field _elementDefinition.
32 private boolean _elementDefinition;
37 private java.lang.String _nsPrefix;
42 private java.lang.String _nsURI;
47 private java.lang.String _xmlName;
53 public SequenceSetDescriptor()
56 _nsURI = "www.vamsas.ac.uk/jalview/version2";
57 _xmlName = "SequenceSet";
58 _elementDefinition = true;
60 // -- set grouping compositor
61 setCompositorAsSequence();
62 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
63 org.exolab.castor.mapping.FieldHandler handler = null;
64 org.exolab.castor.xml.FieldValidator fieldValidator = null;
65 // -- initialize attribute descriptors
68 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
69 java.lang.String.class, "_gapChar", "gapChar",
70 org.exolab.castor.xml.NodeType.Attribute);
71 desc.setImmutable(true);
72 handler = new org.exolab.castor.xml.XMLFieldHandler()
74 public java.lang.Object getValue(java.lang.Object object)
75 throws IllegalStateException
77 SequenceSet target = (SequenceSet) object;
78 return target.getGapChar();
81 public void setValue(java.lang.Object object, java.lang.Object value)
82 throws IllegalStateException, IllegalArgumentException
86 SequenceSet target = (SequenceSet) object;
87 target.setGapChar((java.lang.String) value);
88 } catch (java.lang.Exception ex)
90 throw new IllegalStateException(ex.toString());
94 public java.lang.Object newInstance(java.lang.Object parent)
99 desc.setHandler(handler);
100 desc.setRequired(true);
101 desc.setMultivalued(false);
102 addFieldDescriptor(desc);
104 // -- validation code for: _gapChar
105 fieldValidator = new org.exolab.castor.xml.FieldValidator();
106 fieldValidator.setMinOccurs(1);
108 org.exolab.castor.xml.validators.StringValidator typeValidator;
109 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
110 fieldValidator.setValidator(typeValidator);
111 typeValidator.setWhiteSpace("preserve");
113 desc.setValidator(fieldValidator);
115 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
116 java.lang.String.class, "_datasetId", "datasetId",
117 org.exolab.castor.xml.NodeType.Attribute);
118 desc.setImmutable(true);
119 handler = new org.exolab.castor.xml.XMLFieldHandler()
121 public java.lang.Object getValue(java.lang.Object object)
122 throws IllegalStateException
124 SequenceSet target = (SequenceSet) object;
125 return target.getDatasetId();
128 public void setValue(java.lang.Object object, java.lang.Object value)
129 throws IllegalStateException, IllegalArgumentException
133 SequenceSet target = (SequenceSet) object;
134 target.setDatasetId((java.lang.String) value);
135 } catch (java.lang.Exception ex)
137 throw new IllegalStateException(ex.toString());
141 public java.lang.Object newInstance(java.lang.Object parent)
146 desc.setHandler(handler);
147 desc.setMultivalued(false);
148 addFieldDescriptor(desc);
150 // -- validation code for: _datasetId
151 fieldValidator = new org.exolab.castor.xml.FieldValidator();
153 org.exolab.castor.xml.validators.StringValidator typeValidator;
154 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
155 fieldValidator.setValidator(typeValidator);
156 typeValidator.setWhiteSpace("preserve");
158 desc.setValidator(fieldValidator);
159 // -- initialize element descriptors
162 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
163 jalview.schemabinding.version2.Sequence.class, "_sequenceList",
164 "Sequence", org.exolab.castor.xml.NodeType.Element);
165 handler = new org.exolab.castor.xml.XMLFieldHandler()
167 public java.lang.Object getValue(java.lang.Object object)
168 throws IllegalStateException
170 SequenceSet target = (SequenceSet) object;
171 return target.getSequence();
174 public void setValue(java.lang.Object object, java.lang.Object value)
175 throws IllegalStateException, IllegalArgumentException
179 SequenceSet target = (SequenceSet) object;
180 target.addSequence((jalview.schemabinding.version2.Sequence) value);
181 } catch (java.lang.Exception ex)
183 throw new IllegalStateException(ex.toString());
187 public void resetValue(Object object) throws IllegalStateException,
188 IllegalArgumentException
192 SequenceSet target = (SequenceSet) object;
193 target.removeAllSequence();
194 } catch (java.lang.Exception ex)
196 throw new IllegalStateException(ex.toString());
200 public java.lang.Object newInstance(java.lang.Object parent)
202 return new jalview.schemabinding.version2.Sequence();
205 desc.setHandler(handler);
206 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
207 desc.setMultivalued(true);
208 addFieldDescriptor(desc);
210 // -- validation code for: _sequenceList
211 fieldValidator = new org.exolab.castor.xml.FieldValidator();
212 fieldValidator.setMinOccurs(0);
215 desc.setValidator(fieldValidator);
216 // -- _annotationList
217 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
218 jalview.schemabinding.version2.Annotation.class,
219 "_annotationList", "Annotation",
220 org.exolab.castor.xml.NodeType.Element);
221 handler = new org.exolab.castor.xml.XMLFieldHandler()
223 public java.lang.Object getValue(java.lang.Object object)
224 throws IllegalStateException
226 SequenceSet target = (SequenceSet) object;
227 return target.getAnnotation();
230 public void setValue(java.lang.Object object, java.lang.Object value)
231 throws IllegalStateException, IllegalArgumentException
235 SequenceSet target = (SequenceSet) object;
236 target.addAnnotation((jalview.schemabinding.version2.Annotation) value);
237 } catch (java.lang.Exception ex)
239 throw new IllegalStateException(ex.toString());
243 public void resetValue(Object object) throws IllegalStateException,
244 IllegalArgumentException
248 SequenceSet target = (SequenceSet) object;
249 target.removeAllAnnotation();
250 } catch (java.lang.Exception ex)
252 throw new IllegalStateException(ex.toString());
256 public java.lang.Object newInstance(java.lang.Object parent)
258 return new jalview.schemabinding.version2.Annotation();
261 desc.setHandler(handler);
262 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
263 desc.setMultivalued(true);
264 addFieldDescriptor(desc);
266 // -- validation code for: _annotationList
267 fieldValidator = new org.exolab.castor.xml.FieldValidator();
268 fieldValidator.setMinOccurs(0);
271 desc.setValidator(fieldValidator);
272 // -- _sequenceSetPropertiesList
273 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
274 jalview.schemabinding.version2.SequenceSetProperties.class,
275 "_sequenceSetPropertiesList", "sequenceSetProperties",
276 org.exolab.castor.xml.NodeType.Element);
277 handler = new org.exolab.castor.xml.XMLFieldHandler()
279 public java.lang.Object getValue(java.lang.Object object)
280 throws IllegalStateException
282 SequenceSet target = (SequenceSet) object;
283 return target.getSequenceSetProperties();
286 public void setValue(java.lang.Object object, java.lang.Object value)
287 throws IllegalStateException, IllegalArgumentException
291 SequenceSet target = (SequenceSet) object;
292 target.addSequenceSetProperties((jalview.schemabinding.version2.SequenceSetProperties) value);
293 } catch (java.lang.Exception ex)
295 throw new IllegalStateException(ex.toString());
299 public void resetValue(Object object) throws IllegalStateException,
300 IllegalArgumentException
304 SequenceSet target = (SequenceSet) object;
305 target.removeAllSequenceSetProperties();
306 } catch (java.lang.Exception ex)
308 throw new IllegalStateException(ex.toString());
312 public java.lang.Object newInstance(java.lang.Object parent)
314 return new jalview.schemabinding.version2.SequenceSetProperties();
317 desc.setHandler(handler);
318 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
319 desc.setMultivalued(true);
320 addFieldDescriptor(desc);
322 // -- validation code for: _sequenceSetPropertiesList
323 fieldValidator = new org.exolab.castor.xml.FieldValidator();
324 fieldValidator.setMinOccurs(0);
327 desc.setValidator(fieldValidator);
328 // -- _alcodonFrameList
329 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(
330 jalview.schemabinding.version2.AlcodonFrame.class,
331 "_alcodonFrameList", "AlcodonFrame",
332 org.exolab.castor.xml.NodeType.Element);
333 handler = new org.exolab.castor.xml.XMLFieldHandler()
335 public java.lang.Object getValue(java.lang.Object object)
336 throws IllegalStateException
338 SequenceSet target = (SequenceSet) object;
339 return target.getAlcodonFrame();
342 public void setValue(java.lang.Object object, java.lang.Object value)
343 throws IllegalStateException, IllegalArgumentException
347 SequenceSet target = (SequenceSet) object;
348 target.addAlcodonFrame((jalview.schemabinding.version2.AlcodonFrame) value);
349 } catch (java.lang.Exception ex)
351 throw new IllegalStateException(ex.toString());
355 public void resetValue(Object object) throws IllegalStateException,
356 IllegalArgumentException
360 SequenceSet target = (SequenceSet) object;
361 target.removeAllAlcodonFrame();
362 } catch (java.lang.Exception ex)
364 throw new IllegalStateException(ex.toString());
368 public java.lang.Object newInstance(java.lang.Object parent)
370 return new jalview.schemabinding.version2.AlcodonFrame();
373 desc.setHandler(handler);
374 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
375 desc.setMultivalued(true);
376 addFieldDescriptor(desc);
378 // -- validation code for: _alcodonFrameList
379 fieldValidator = new org.exolab.castor.xml.FieldValidator();
380 fieldValidator.setMinOccurs(0);
383 desc.setValidator(fieldValidator);
391 * Method getAccessMode.
393 * @return the access mode specified for this class.
395 public org.exolab.castor.mapping.AccessMode getAccessMode()
401 * Method getIdentity.
403 * @return the identity field, null if this class has no identity.
405 public org.exolab.castor.mapping.FieldDescriptor getIdentity()
407 return super.getIdentity();
411 * Method getJavaClass.
413 * @return the Java class represented by this descriptor.
415 public java.lang.Class getJavaClass()
417 return jalview.schemabinding.version2.SequenceSet.class;
421 * Method getNameSpacePrefix.
423 * @return the namespace prefix to use when marshaling as XML.
425 public java.lang.String getNameSpacePrefix()
431 * Method getNameSpaceURI.
433 * @return the namespace URI used when marshaling and unmarshaling as XML.
435 public java.lang.String getNameSpaceURI()
441 * Method getValidator.
443 * @return a specific validator for the class described by this
446 public org.exolab.castor.xml.TypeValidator getValidator()
454 * @return the XML Name for the Class being described.
456 public java.lang.String getXMLName()
462 * Method isElementDefinition.
464 * @return true if XML schema definition of this Class is that of a global
465 * element or element with anonymous type definition.
467 public boolean isElementDefinition()
469 return _elementDefinition;