1 /*******************************************************************************
2 * Jalview - A Sequence Alignment Editor and Viewer (Version 2.7)
3 * Copyright (C) 2011 J Procter, AM Waterhouse, J Engelhardt, LM Lui, G Barton, M Clamp, S Searle
5 * This file is part of Jalview.
7 * Jalview is free software: you can redistribute it and/or
8 * modify it under the terms of the GNU General Public License
9 * as published by the Free Software Foundation, either version 3 of the License, or (at your option) any later version.
11 * Jalview is distributed in the hope that it will be useful, but
12 * WITHOUT ANY WARRANTY; without even the implied warranty
13 * of MERCHANTABILITY or FITNESS FOR A PARTICULAR
14 * PURPOSE. See the GNU General Public License for more details.
16 * You should have received a copy of the GNU General Public License along with Jalview. If not, see <http://www.gnu.org/licenses/>.
17 *******************************************************************************/
19 * This class was automatically generated with
20 * <a href="http://www.castor.org">Castor 1.1</a>, using an XML
25 package jalview.schemabinding.version2.descriptors;
27 //---------------------------------/
28 //- Imported classes and packages -/
29 //---------------------------------/
31 import jalview.schemabinding.version2.SequenceType;
34 * Class SequenceTypeDescriptor.
36 * @version $Revision$ $Date$
38 public class SequenceTypeDescriptor extends org.exolab.castor.xml.util.XMLClassDescriptorImpl {
41 //--------------------------/
42 //- Class/Member Variables -/
43 //--------------------------/
46 * Field _elementDefinition.
48 private boolean _elementDefinition;
53 private java.lang.String _nsPrefix;
58 private java.lang.String _nsURI;
63 private java.lang.String _xmlName;
70 public SequenceTypeDescriptor() {
72 _nsURI = "www.vamsas.ac.uk/jalview/version2";
73 _xmlName = "SequenceType";
74 _elementDefinition = false;
76 //-- set grouping compositor
77 setCompositorAsSequence();
78 org.exolab.castor.xml.util.XMLFieldDescriptorImpl desc = null;
79 org.exolab.castor.mapping.FieldHandler handler = null;
80 org.exolab.castor.xml.FieldValidator fieldValidator = null;
81 //-- initialize attribute descriptors
84 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_id", "id", org.exolab.castor.xml.NodeType.Attribute);
85 desc.setImmutable(true);
86 handler = new org.exolab.castor.xml.XMLFieldHandler() {
87 public java.lang.Object getValue( java.lang.Object object )
88 throws IllegalStateException
90 SequenceType target = (SequenceType) object;
91 return target.getId();
93 public void setValue( java.lang.Object object, java.lang.Object value)
94 throws IllegalStateException, IllegalArgumentException
97 SequenceType target = (SequenceType) object;
98 target.setId( (java.lang.String) value);
99 } catch (java.lang.Exception ex) {
100 throw new IllegalStateException(ex.toString());
103 public java.lang.Object newInstance(java.lang.Object parent) {
107 desc.setHandler(handler);
108 desc.setMultivalued(false);
109 addFieldDescriptor(desc);
111 //-- validation code for: _id
112 fieldValidator = new org.exolab.castor.xml.FieldValidator();
114 org.exolab.castor.xml.validators.StringValidator typeValidator;
115 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
116 fieldValidator.setValidator(typeValidator);
117 typeValidator.setWhiteSpace("preserve");
119 desc.setValidator(fieldValidator);
121 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_description", "description", org.exolab.castor.xml.NodeType.Attribute);
122 desc.setImmutable(true);
123 handler = new org.exolab.castor.xml.XMLFieldHandler() {
124 public java.lang.Object getValue( java.lang.Object object )
125 throws IllegalStateException
127 SequenceType target = (SequenceType) object;
128 return target.getDescription();
130 public void setValue( java.lang.Object object, java.lang.Object value)
131 throws IllegalStateException, IllegalArgumentException
134 SequenceType target = (SequenceType) object;
135 target.setDescription( (java.lang.String) value);
136 } catch (java.lang.Exception ex) {
137 throw new IllegalStateException(ex.toString());
140 public java.lang.Object newInstance(java.lang.Object parent) {
144 desc.setHandler(handler);
145 desc.setMultivalued(false);
146 addFieldDescriptor(desc);
148 //-- validation code for: _description
149 fieldValidator = new org.exolab.castor.xml.FieldValidator();
151 org.exolab.castor.xml.validators.StringValidator typeValidator;
152 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
153 fieldValidator.setValidator(typeValidator);
154 typeValidator.setWhiteSpace("preserve");
156 desc.setValidator(fieldValidator);
157 //-- initialize element descriptors
160 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_sequence", "sequence", org.exolab.castor.xml.NodeType.Element);
161 desc.setImmutable(true);
162 handler = new org.exolab.castor.xml.XMLFieldHandler() {
163 public java.lang.Object getValue( java.lang.Object object )
164 throws IllegalStateException
166 SequenceType target = (SequenceType) object;
167 return target.getSequence();
169 public void setValue( java.lang.Object object, java.lang.Object value)
170 throws IllegalStateException, IllegalArgumentException
173 SequenceType target = (SequenceType) object;
174 target.setSequence( (java.lang.String) value);
175 } catch (java.lang.Exception ex) {
176 throw new IllegalStateException(ex.toString());
179 public java.lang.Object newInstance(java.lang.Object parent) {
183 desc.setHandler(handler);
184 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
185 desc.setMultivalued(false);
186 addFieldDescriptor(desc);
188 //-- validation code for: _sequence
189 fieldValidator = new org.exolab.castor.xml.FieldValidator();
191 org.exolab.castor.xml.validators.StringValidator typeValidator;
192 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
193 fieldValidator.setValidator(typeValidator);
194 typeValidator.setWhiteSpace("preserve");
196 desc.setValidator(fieldValidator);
198 desc = new org.exolab.castor.xml.util.XMLFieldDescriptorImpl(java.lang.String.class, "_name", "name", org.exolab.castor.xml.NodeType.Element);
199 desc.setImmutable(true);
200 handler = new org.exolab.castor.xml.XMLFieldHandler() {
201 public java.lang.Object getValue( java.lang.Object object )
202 throws IllegalStateException
204 SequenceType target = (SequenceType) object;
205 return target.getName();
207 public void setValue( java.lang.Object object, java.lang.Object value)
208 throws IllegalStateException, IllegalArgumentException
211 SequenceType target = (SequenceType) object;
212 target.setName( (java.lang.String) value);
213 } catch (java.lang.Exception ex) {
214 throw new IllegalStateException(ex.toString());
217 public java.lang.Object newInstance(java.lang.Object parent) {
221 desc.setHandler(handler);
222 desc.setNameSpaceURI("www.vamsas.ac.uk/jalview/version2");
223 desc.setMultivalued(false);
224 addFieldDescriptor(desc);
226 //-- validation code for: _name
227 fieldValidator = new org.exolab.castor.xml.FieldValidator();
229 org.exolab.castor.xml.validators.StringValidator typeValidator;
230 typeValidator = new org.exolab.castor.xml.validators.StringValidator();
231 fieldValidator.setValidator(typeValidator);
232 typeValidator.setWhiteSpace("preserve");
234 desc.setValidator(fieldValidator);
243 * Method getAccessMode.
245 * @return the access mode specified for this class.
247 public org.exolab.castor.mapping.AccessMode getAccessMode(
253 * Method getIdentity.
255 * @return the identity field, null if this class has no
258 public org.exolab.castor.mapping.FieldDescriptor getIdentity(
260 return super.getIdentity();
264 * Method getJavaClass.
266 * @return the Java class represented by this descriptor.
268 public java.lang.Class getJavaClass(
270 return jalview.schemabinding.version2.SequenceType.class;
274 * Method getNameSpacePrefix.
276 * @return the namespace prefix to use when marshaling as XML.
278 public java.lang.String getNameSpacePrefix(
284 * Method getNameSpaceURI.
286 * @return the namespace URI used when marshaling and
287 * unmarshaling as XML.
289 public java.lang.String getNameSpaceURI(
295 * Method getValidator.
297 * @return a specific validator for the class described by this
300 public org.exolab.castor.xml.TypeValidator getValidator(
308 * @return the XML Name for the Class being described.
310 public java.lang.String getXMLName(
316 * Method isElementDefinition.
318 * @return true if XML schema definition of this Class is that
320 * element or element with anonymous type definition.
322 public boolean isElementDefinition(
324 return _elementDefinition;